CsGy2G009290 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G009290
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRING finger protein 165-like
LocationChr2 : 8553936 .. 8554610 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCTCTGCTACTTCCTGCGTCCAATGTTCTTTCTCCGGCTATCCAAACACCGATCAGACCCTCATTGTTCGACTTAGGTTTTGTAGCCGCCTGATTTCCCAATCTCTCGCTCCTGAGATTGTTCCAGATGTAATTTTGGAACAGACCCCTTTCACTCTCATAGGTGAGGCTCTGTTTTCTCTTTCTAACCTGCAGTATCCTCTACAACAACAAGAATTAGAGTATATGGTGAACGAGTTTCTGCGTTCGTTCAATCTCCGTTCCTCCGTCTGCCGAATCGTATCCCACAACATTCTATCCTTTGCCCAACAGTTCGACATAAATAACGAGTGCTTCAAAATAGAAACGAACGTCGATTACATAAAGGAGTATTGGACGGAGGCTGCCCCTGAATTATACCCCATCTCCACCGTAGGAGAGGAAGGTCTTCCACCGAGAGGGGCGTCGGAGTCGGCTATAGAGAGAGTAAAGAAGCAAAAATTTGATGGGTTTAGGGGAGAAGAAGAAGAAGAAATTGGAGATTGCAGTGTTTGCTGTGAAGAGATAAAAAGAAAGGGAGGGGAGGTGAGAAGGATTCCATGCGGTCATGTGTATCACAAATCGTGCATCCTCAAATGGCTTGAAATTAGTAACTCCTGCCCATTGTGTAGAGCAGCGTTGGAACCATGA

mRNA sequence

ATGTCTTTCTCTGCTACTTCCTGCGTCCAATGTTCTTTCTCCGGCTATCCAAACACCGATCAGACCCTCATTGTTCGACTTAGGTTTTGTAGCCGCCTGATTTCCCAATCTCTCGCTCCTGAGATTGTTCCAGATGTAATTTTGGAACAGACCCCTTTCACTCTCATAGGTGAGGCTCTGTTTTCTCTTTCTAACCTGCAGTATCCTCTACAACAACAAGAATTAGAGTATATGGTGAACGAGTTTCTGCGTTCGTTCAATCTCCGTTCCTCCGTCTGCCGAATCGTATCCCACAACATTCTATCCTTTGCCCAACAGTTCGACATAAATAACGAGTGCTTCAAAATAGAAACGAACGTCGATTACATAAAGGAGTATTGGACGGAGGCTGCCCCTGAATTATACCCCATCTCCACCGTAGGAGAGGAAGGTCTTCCACCGAGAGGGGCGTCGGAGTCGGCTATAGAGAGAGTAAAGAAGCAAAAATTTGATGGGTTTAGGGGAGAAGAAGAAGAAGAAATTGGAGATTGCAGTGTTTGCTGTGAAGAGATAAAAAGAAAGGGAGGGGAGGTGAGAAGGATTCCATGCGGTCATGTGTATCACAAATCGTGCATCCTCAAATGGCTTGAAATTAGTAACTCCTGCCCATTGTGTAGAGCAGCGTTGGAACCATGA

Coding sequence (CDS)

ATGTCTTTCTCTGCTACTTCCTGCGTCCAATGTTCTTTCTCCGGCTATCCAAACACCGATCAGACCCTCATTGTTCGACTTAGGTTTTGTAGCCGCCTGATTTCCCAATCTCTCGCTCCTGAGATTGTTCCAGATGTAATTTTGGAACAGACCCCTTTCACTCTCATAGGTGAGGCTCTGTTTTCTCTTTCTAACCTGCAGTATCCTCTACAACAACAAGAATTAGAGTATATGGTGAACGAGTTTCTGCGTTCGTTCAATCTCCGTTCCTCCGTCTGCCGAATCGTATCCCACAACATTCTATCCTTTGCCCAACAGTTCGACATAAATAACGAGTGCTTCAAAATAGAAACGAACGTCGATTACATAAAGGAGTATTGGACGGAGGCTGCCCCTGAATTATACCCCATCTCCACCGTAGGAGAGGAAGGTCTTCCACCGAGAGGGGCGTCGGAGTCGGCTATAGAGAGAGTAAAGAAGCAAAAATTTGATGGGTTTAGGGGAGAAGAAGAAGAAGAAATTGGAGATTGCAGTGTTTGCTGTGAAGAGATAAAAAGAAAGGGAGGGGAGGTGAGAAGGATTCCATGCGGTCATGTGTATCACAAATCGTGCATCCTCAAATGGCTTGAAATTAGTAACTCCTGCCCATTGTGTAGAGCAGCGTTGGAACCATGA

Protein sequence

MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNVDYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP
Homology
[Close]
BLAST of CsGy2G009290 vs. NCBI nr
Match: XP_004139003.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN61460.1 hypothetical protein Csa_2G130680 [Cucumis sativus])

HSP 1 Score: 459.5 bits (1181), Expect = 6.4e-126
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 

Query: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60
           MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL
Sbjct: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60

Query: 61  FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV 120
           FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV
Sbjct: 61  FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV 120

Query: 121 DYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVC 180
           DYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVC
Sbjct: 121 DYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVC 180

Query: 181 CEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 225
           CEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP
Sbjct: 181 CEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 224

[Close]
BLAST of CsGy2G009290 vs. NCBI nr
Match: XP_008457277.1 (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 182/224 (81.25%), Postives = 191/224 (85.27%), Query Frame = 0 

Query: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60
           MSFSATSC++CSFSGYPNTDQTLIVR   CSRLISQS +PEI+PDVILEQTPFTLIGEAL
Sbjct: 1   MSFSATSCLECSFSGYPNTDQTLIVRFGSCSRLISQSPSPEIIPDVILEQTPFTLIGEAL 60

Query: 61  FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV 120
           FSLSNL+ PLQQQEL+Y+VNEFL SFNLRSSVCRI+SHNILSFAQQFDINNE  KIE NV
Sbjct: 61  FSLSNLRCPLQQQELQYLVNEFLHSFNLRSSVCRIISHNILSFAQQFDINNEWVKIEANV 120

Query: 121 DYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVC 180
           D+IKEYWTEA PEL PISTVGEEGL PRGASESAIERVKKQK D F              
Sbjct: 121 DHIKEYWTEAPPELNPISTVGEEGLSPRGASESAIERVKKQKLDWFSEXXXXXXXXXXXX 180

Query: 181 CEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 225
               KRKG EVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP
Sbjct: 181 XXXXKRKGEEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 224

[Close]
BLAST of CsGy2G009290 vs. NCBI nr
Match: XP_008442291.1 (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 1.1e-45
Identity = 101/175 (57.71%), Postives = 123/175 (70.29%), Query Frame = 0 

Query: 56  IGEALFSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFK 115
           +G+ L   SNL++P QQQ ++++VN+FL SFNL SSV R + H ILSFA QF      FK
Sbjct: 1   MGDTLIPFSNLRHPRQQQSIQFLVNQFLCSFNLHSSVRRTICHEILSFALQFRAILPSFK 60

Query: 116 IETNVDYIKEYWTEAAPELYPISTVGEEGL----PP--RGASESAIER-VKKQKFDGFRG 175
           IE N+D++++              +GE+G     PP  RGA ESAIER + KQKFDGF  
Sbjct: 61  IEANIDHVEDL------------IIGEQGFQETPPPRTRGAPESAIERLIMKQKFDGFNK 120

Query: 176 EEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 224
           EEEEEIGDCSVC EE+K KG EV RIPCGHVYHKSC+L WL+I+NSCPLCRA LE
Sbjct: 121 EEEEEIGDCSVCYEELKGKGKEVSRIPCGHVYHKSCVLTWLQINNSCPLCRAPLE 163

[Close]
BLAST of CsGy2G009290 vs. NCBI nr
Match: XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 3.7e-33
Identity = 102/227 (44.93%), Postives = 131/227 (57.71%), Query Frame = 0 

Query: 3   FSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFS 62
           FS  +    + + + +  Q + +RL   S LIS+S         IL+Q+P T +GE+LF 
Sbjct: 13  FSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQ------ILQQSPSTPLGESLFP 72

Query: 63  --LSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNE--CFKIET 122
             L +L++P       Y V  FL SF++  + C I+   I SFA +   +N    F I  
Sbjct: 73  FILRDLEHPPFLP--NYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHIVV 132

Query: 123 NVDYIKEYWTEAAPELYPISTVGEEGLPP--RGASESAIERVKKQKFDGFRGEEEEEIGD 182
           +VD I+  W +  P L       EE  PP   GA  SAIER+++QKFDG R EEEE  GD
Sbjct: 133 DVDAIEMIWVDLDPFLV------EEYSPPAMNGAPASAIERLQRQKFDGLREEEEE--GD 192

Query: 183 CSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 224
           CSVCCE + R   EV RIPCGHVYHK CILKWL+ISNSCPLCR  LE
Sbjct: 193 CSVCCEAL-RGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLE 222

[Close]
BLAST of CsGy2G009290 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 90/239 (37.66%), Postives = 131/239 (54.81%), Query Frame = 0 

Query: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60
           MS +  +  +C+   Y   DQ L +R+   SRL++ S              PF ++ E L
Sbjct: 1   MSLADLATFRCNLHRYDGPDQLLQIRIGHSSRLLTGS---------PFSGYPFNIVHETL 60

Query: 61  -FSLSNLQYPLQQQELE------YMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINN-- 120
             ++++ Q+PL  +ELE        + EFL S+NL +++   ++  I SF  Q    N  
Sbjct: 61  PTTMADAQFPLPLRELEDPLFCQAYIKEFLSSYNLGATIKNAIARRIASFVVQMACGNYE 120

Query: 121 ECFKIETNVDYIKEYWTE-------AAPELYPISTVGEEGLPPRGASESAIERVKKQKFD 180
             F I   +DYI+ +W +                 + ++    RGA E+AIER+KK+KFD
Sbjct: 121 MTFYIVAEIDYIQMFWMDXXXXXXXXXXXXXXXXXIFDDFSGRRGAPETAIERLKKEKFD 180

Query: 181 GFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 224
           GF G   E++G+CSVC +E+K  G EV RIPCGHVYHKSC+L WL+ +NSCPLCR  LE
Sbjct: 181 GFGG---EDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRNKLE 227

[Close]
BLAST of CsGy2G009290 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-12
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 144 GLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKS 203
           G PP  AS+SAI+ +   K    +   + E+  C+VC +E +  G +V+++PC HV+H+ 
Sbjct: 187 GTPP--ASKSAIDALPTVKVT--KDMLKSEMNQCAVCMDEFE-DGSDVKQMPCKHVFHQD 246

Query: 204 CILKWLEISNSCPLCRAAL 223
           C+L WLE+ NSCP+CR  L
Sbjct: 247 CLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of CsGy2G009290 vs. TAIR10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-11
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 140 VGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHV 199
           +G  G PP  AS+SAIE + + +      + E    +C+V C E+   G E R +PC H+
Sbjct: 183 IGRSGNPP--ASKSAIESLPRVEISDCHTKAE---ANCAV-CTEVFEAGIEGREMPCKHI 242

Query: 200 YHKSCILKWLEISNSCPLCRAAL 223
           +H  CI+ WL I NSCP+CR  L
Sbjct: 243 FHGDCIVPWLSIRNSCPVCRFEL 259

[Close]
BLAST of CsGy2G009290 vs. TAIR10
Match: AT1G60360.1 (RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 35/99 (35.35%), Postives = 52/99 (52.53%), Query Frame = 0 

Query: 125 EYWTEAAPELYPISTVGEEGLP-PRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEE 184
           +Y+T A+     I  + ++  P P  ASE  I  +   K          ++  C+VC EE
Sbjct: 173 DYFTGASSLEQLIEQLTQDDRPGPPPASEPTINSLPSVKIT--PQHLTNDMSQCTVCMEE 232

Query: 185 IKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAAL 223
               GG+   +PC H+YHK CI+ WL ++NSCP+CR  L
Sbjct: 233 F-IVGGDATELPCKHIYHKDCIVPWLRLNNSCPICRRDL 268

[Close]
BLAST of CsGy2G009290 vs. TAIR10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0 

Query: 140 VGEEGLPPRGASESAIERVKKQKF-DGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGH 199
           +G  G PP  AS+SAIE + + +  D   G E     +C+V C EI     E R +PC H
Sbjct: 167 IGRSGNPP--ASKSAIESLPRVEISDCHIGSE----ANCAV-CTEIFETETEAREMPCKH 226

Query: 200 VYHKSCILKWLEISNSCPLCRAAL 223
           ++H  CI+ WL I NSCP+CR  L
Sbjct: 227 LFHDDCIVPWLSIRNSCPVCRFEL 243

[Close]
BLAST of CsGy2G009290 vs. TAIR10
Match: AT5G37200.1 (RING/U-box superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-10
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 148 RGASESAIER-VKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIP-CGHVYHKSCI 207
           RGAS     R V++Q+ +    EEE+E   CS+C E+      ++ R+P C H++H+ C+
Sbjct: 131 RGASGEVFHRLVEEQRVESADLEEEDE--TCSICIEKFSESHEDIIRVPDCLHLFHQGCL 190

Query: 208 LKWLEISNSCPLCR 220
            +WL + NSCPLCR
Sbjct: 191 FEWLGLQNSCPLCR 202

[Close]
BLAST of CsGy2G009290 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 0 

Query: 87  NLRSSVCRIVSHNILSFAQQFDINNECFKIETNV-DYIKEYWTEAAPELYPISTVGEEGL 146
           +LRSS  +I       F  Q + +++ F++  N+ DY      E   +    +     G 
Sbjct: 143 DLRSSGAQI------EFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGT 202

Query: 147 PPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCI 206
           PP  AS+SAIE +        +     E   C+VC ++ + +G E +++PC H+YHK C+
Sbjct: 203 PP--ASKSAIEALPLVNIT--KSNLNSEFNQCAVCMDDFE-EGTEAKQMPCKHLYHKDCL 262

Query: 207 LKWLEISNSCPLCRAAL 223
           L WLE+ NSCP+CR  L
Sbjct: 263 LPWLELHNSCPVCRHEL 268

[Close]
BLAST of CsGy2G009290 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 144 GLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKS 203
           G PP  AS+SAI+ +   K    +   + E+  C+VC +E +  G +V+++PC HV+H+ 
Sbjct: 187 GTPP--ASKSAIDALPTVKVT--KDMLKSEMNQCAVCMDEFE-DGSDVKQMPCKHVFHQD 246

Query: 204 CILKWLEISNSCPLCRAAL 223
           C+L WLE+ NSCP+CR  L
Sbjct: 247 CLLPWLELHNSCPVCRFEL 260

[Close]
BLAST of CsGy2G009290 vs. Swiss-Prot
Match: sp|Q5R476|RN111_PONAB (E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii OX=9601 GN=RNF111 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-10
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 148 RGASESAIER------VKKQKF----DGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCG 207
           RGAS+  IER       KK+K     DG  G EE+    C++C   I  +G +VRR+PC 
Sbjct: 895 RGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICL-SILEEGEDVRRLPCM 954

Query: 208 HVYHKSCILKWLEISNSCPLCRAALE 224
           H++H+ C+ +WL  +  CP+CR  +E
Sbjct: 955 HLFHQVCVDQWLITNKKCPICRVDIE 979

[Close]
BLAST of CsGy2G009290 vs. Swiss-Prot
Match: sp|Q6ZSG1|RN165_HUMAN (E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-10
Identity = 51/194 (26.29%), Postives = 88/194 (45.36%), Query Frame = 0 

Query: 44  PDVILEQTPFTLIGEALFSLSNLQY-PLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILS 103
           P  + E T + L  +A  S +  Q  P+ Q    Y+    +  F   SS  ++V H I +
Sbjct: 153 PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHHFPRNSSSTQMVVHEIRN 212

Query: 104 --FAQQFDINNECFKIETNVDYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERV-- 163
             + Q   +  +      +   ++E + E       +      G   RGA ++ IER   
Sbjct: 213 YPYPQLHFLALQGLNPSRHTSAVRESYEEL------LQLEDRLGNVTRGAVQNTIERFTF 272

Query: 164 -----KKQKFDG----FRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWL 223
                K++  DG      GEE +    C++C   ++  G +VRR+PC H++H+ C+ +WL
Sbjct: 273 PHKYKKRRPQDGKGKKDEGEESDTDEKCTICLSMLE-DGEDVRRLPCMHLFHQLCVDQWL 332

[Close]
BLAST of CsGy2G009290 vs. Swiss-Prot
Match: sp|Q9SNB6|RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 140 VGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHV 199
           +G  G PP  AS+SAIE + + +      + E    +C+V C E+   G E R +PC H+
Sbjct: 183 IGRSGNPP--ASKSAIESLPRVEISDCHTKAE---ANCAV-CTEVFEAGIEGREMPCKHI 242

Query: 200 YHKSCILKWLEISNSCPLCRAAL 223
           +H  CI+ WL I NSCP+CR  L
Sbjct: 243 FHGDCIVPWLSIRNSCPVCRFEL 259

[Close]
BLAST of CsGy2G009290 vs. TrEMBL
Match: tr|A0A0A0LHS2|A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 4.2e-126
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 

Query: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60
           MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL
Sbjct: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60

Query: 61  FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV 120
           FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV
Sbjct: 61  FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV 120

Query: 121 DYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVC 180
           DYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVC
Sbjct: 121 DYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVC 180

Query: 181 CEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 225
           CEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP
Sbjct: 181 CEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 224

[Close]
BLAST of CsGy2G009290 vs. TrEMBL
Match: tr|A0A1S3C5T8|A0A1S3C5T8_CUCME (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103497006 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 9.2e-97
Identity = 182/224 (81.25%), Postives = 191/224 (85.27%), Query Frame = 0 

Query: 1   MSFSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEAL 60
           MSFSATSC++CSFSGYPNTDQTLIVR   CSRLISQS +PEI+PDVILEQTPFTLIGEAL
Sbjct: 1   MSFSATSCLECSFSGYPNTDQTLIVRFGSCSRLISQSPSPEIIPDVILEQTPFTLIGEAL 60

Query: 61  FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFKIETNV 120
           FSLSNL+ PLQQQEL+Y+VNEFL SFNLRSSVCRI+SHNILSFAQQFDINNE  KIE NV
Sbjct: 61  FSLSNLRCPLQQQELQYLVNEFLHSFNLRSSVCRIISHNILSFAQQFDINNEWVKIEANV 120

Query: 121 DYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVC 180
           D+IKEYWTEA PEL PISTVGEEGL PRGASESAIERVKKQK D F              
Sbjct: 121 DHIKEYWTEAPPELNPISTVGEEGLSPRGASESAIERVKKQKLDWFSEXXXXXXXXXXXX 180

Query: 181 CEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 225
               KRKG EVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP
Sbjct: 181 XXXXKRKGEEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALEP 224

[Close]
BLAST of CsGy2G009290 vs. TrEMBL
Match: tr|A0A1S3B605|A0A1S3B605_CUCME (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.4e-46
Identity = 101/175 (57.71%), Postives = 123/175 (70.29%), Query Frame = 0 

Query: 56  IGEALFSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNECFK 115
           +G+ L   SNL++P QQQ ++++VN+FL SFNL SSV R + H ILSFA QF      FK
Sbjct: 1   MGDTLIPFSNLRHPRQQQSIQFLVNQFLCSFNLHSSVRRTICHEILSFALQFRAILPSFK 60

Query: 116 IETNVDYIKEYWTEAAPELYPISTVGEEGL----PP--RGASESAIER-VKKQKFDGFRG 175
           IE N+D++++              +GE+G     PP  RGA ESAIER + KQKFDGF  
Sbjct: 61  IEANIDHVEDL------------IIGEQGFQETPPPRTRGAPESAIERLIMKQKFDGFNK 120

Query: 176 EEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 224
           EEEEEIGDCSVC EE+K KG EV RIPCGHVYHKSC+L WL+I+NSCPLCRA LE
Sbjct: 121 EEEEEIGDCSVCYEELKGKGKEVSRIPCGHVYHKSCVLTWLQINNSCPLCRAPLE 163

[Close]
BLAST of CsGy2G009290 vs. TrEMBL
Match: tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.7e-27
Identity = 86/193 (44.56%), Postives = 110/193 (56.99%), Query Frame = 0 

Query: 47  ILEQTPFTLIGEAL--FSLSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFA 106
           IL+QT  TLI + L  FSL  L+ P       + +  FL S+++ ++VC  + +NI SFA
Sbjct: 49  ILQQTSPTLISDTLIPFSLWELEDP--PFISYFFLFRFLSSYDISAAVCDAIFYNISSFA 108

Query: 107 QQF----DIN-NECFKIETNVDYIKEYWTEAAPELYPISTVGEEGLPP--RGASESAIER 166
            Q     D N N  F I  +VD +  +W +  P          E  P   +GAS S IER
Sbjct: 109 GQILLAADSNINVNFHIIADVDIVYTHWVDLDP---------AEDAPAVRKGASTSVIER 168

Query: 167 VKKQKFDGFRGEEEEEIGDCSVCCEEIKRK-------GGEVRRIPCGHVYHKSCILKWLE 224
           V K+K+DG  GEE+E    CSVC E++  K         EV RIPCGH+YHKSCILKWL+
Sbjct: 169 VMKEKYDGNGGEEKEGDDQCSVCYEQLYGKRENEXXXXKEVSRIPCGHMYHKSCILKWLK 228

[Close]
BLAST of CsGy2G009290 vs. TrEMBL
Match: tr|A0A0A0LRB0|A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 88/236 (37.29%), Postives = 129/236 (54.66%), Query Frame = 0 

Query: 2   SFSATSCVQCSFSGYPNTD----QTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIG 61
           +FS    ++C+ +G   T+    Q + +RL   S+L+   L+P      IL+QT   LI 
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLV---LSPS---HQILQQTSPILIS 65

Query: 62  EALFSLSNLQYPLQQQELEYMVN-----EFLRSFNLRSSVCRIVSHNILSFAQQFDIN-- 121
           + L     +++PL++ E    ++      FL S+N+  +VC  +   I SFA Q      
Sbjct: 66  DTL-----IRFPLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNL 125

Query: 122 NECFKIETNVDYIKEYWTEAAPELYPISTVGEEGLPPRGASESAIERVKKQKFDGFRGEE 181
           N  F I   +D++  +W +  P         +     +GA  SAIER+ K+K+DG  GEE
Sbjct: 126 NSNFHIIAALDFVYTHWVDLDP-------AEDAAAVRQGAPRSAIERLMKEKYDGNGGEE 185

Query: 182 EEEIGDCSVCCEEI---KRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 224
            E+  +CSVC E++     K  EV RIPCGH++HKSCILKWL+ISNSCPLCR  LE
Sbjct: 186 MED--ECSVCYEDLHGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

The following BLAST results are available for this feature:
BLAST of CsGy2G009290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139003.16.4e-126100.00PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN61460.1 ... [more]
XP_008457277.11.4e-9681.25PREDICTED: RING finger protein 165-like [Cucumis melo][more]
XP_008442291.11.1e-4557.71PREDICTED: RING finger protein 165-like [Cucumis melo][more]
XP_023006824.13.7e-3344.93RING-H2 finger protein ATL16-like [Cucurbita maxima][more]
XP_023539480.18.3e-3337.66E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy2G009290 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.15.8e-1241.77RING/U-box superfamily protein[more]
AT3G46620.16.4e-1140.96zinc finger (C3HC4-type RING finger) family protein[more]
AT1G60360.11.1e-1035.35RING/U-box superfamily protein[more]
AT5G59550.12.4e-1042.86zinc finger (C3HC4-type RING finger) family protein[more]
AT5G37200.13.2e-1040.54RING/U-box superfamily protein[more]
BLAST of CsGy2G009290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0CH30|RING1_GOSHI2.1e-1132.85E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV... [more]
sp|Q8LPN7|RNG1L_ARATH1.0e-1041.77E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
sp|Q5R476|RN111_PONAB3.9e-1039.53E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii OX=9601 GN=RNF111 PE=2 SV=1[more]
sp|Q6ZSG1|RN165_HUMAN3.9e-1026.29E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1[more]
sp|Q9SNB6|RDUF1_ARATH1.1e-0940.96E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ... [more]
BLAST of CsGy2G009290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LHS2|A0A0A0LHS2_CUCSA4.2e-126100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G130680 PE=4 SV=1[more]
tr|A0A1S3C5T8|A0A1S3C5T8_CUCME9.2e-9781.25RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103497006 PE=4 SV=1[more]
tr|A0A1S3B605|A0A1S3B605_CUCME7.4e-4657.71RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1[more]
tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA7.7e-2744.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1[more]
tr|A0A0A0LRB0|A0A0A0LRB0_CUCSA1.4e-2537.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G009290.1CsGy2G009290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 177..218
e-value: 5.9E-8
score: 42.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 176..219
e-value: 1.8E-12
score: 47.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 177..219
score: 13.227
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 141..224
e-value: 3.0E-20
score: 73.6
NoneNo IPR availablePANTHERPTHR44445FAMILY NOT NAMEDcoord: 147..222
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 168..222

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G009290Csa2G130680Cucumber (Chinese Long) v2cgybcuB056
CsGy2G009290MELO3C020462Melon (DHL92) v3.5.1cgybmeB115
CsGy2G009290CSPI02G09030Wild cucumber (PI 183967)cgybcpiB056
CsGy2G009290MELO3C020462.2Melon (DHL92) v3.6.1cgybmedB114
CsGy2G009290CsaV3_2G011420Cucumber (Chinese Long) v3cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G009290Cucumber (Gy14) v2cgybcgybB054
CsGy2G009290Cucurbita maxima (Rimu)cgybcmaB187
CsGy2G009290Cucurbita maxima (Rimu)cgybcmaB194
CsGy2G009290Cucurbita maxima (Rimu)cgybcmaB197
CsGy2G009290Cucurbita maxima (Rimu)cgybcmaB272
CsGy2G009290Cucurbita moschata (Rifu)cgybcmoB180
CsGy2G009290Cucurbita moschata (Rifu)cgybcmoB187
CsGy2G009290Cucurbita moschata (Rifu)cgybcmoB189
CsGy2G009290Cucurbita moschata (Rifu)cgybcmoB248
CsGy2G009290Cucurbita moschata (Rifu)cgybcmoB257
CsGy2G009290Cucurbita pepo (Zucchini)cgybcpeB180
CsGy2G009290Cucurbita pepo (Zucchini)cgybcpeB201
CsGy2G009290Bottle gourd (USVL1VR-Ls)cgyblsiB083
CsGy2G009290Bottle gourd (USVL1VR-Ls)cgyblsiB114
CsGy2G009290Melon (DHL92) v3.5.1cgybmeB127
CsGy2G009290Melon (DHL92) v3.6.1cgybmedB126
CsGy2G009290Watermelon (Charleston Gray)cgybwcgB135
CsGy2G009290Watermelon (Charleston Gray)cgybwcgB138
CsGy2G009290Watermelon (97103) v1cgybwmB125
CsGy2G009290Watermelon (97103) v1cgybwmB159
CsGy2G009290Wild cucumber (PI 183967)cgybcpiB073
CsGy2G009290Silver-seed gourdcarcgybB0242
CsGy2G009290Silver-seed gourdcarcgybB0946
CsGy2G009290Silver-seed gourdcarcgybB1055
CsGy2G009290Cucumber (Chinese Long) v3cgybcucB079
CsGy2G009290Watermelon (97103) v2cgybwmbB133
CsGy2G009290Watermelon (97103) v2cgybwmbB135
CsGy2G009290Wax gourdcgybwgoB121