CsGy2G008220 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G008220
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 7199786 .. 7203097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCAACCCTAGTACAGAGAGAGAGAGAGATTAGGGAAACATCACCTTATTCCGACCCACTTCACCACAATAACATGGATTTTGAGGAAGCTACTACTCCACTTCCATCTACACATGTCAATATTATGATTCATCCCCAGTCTAAACGACCACAAAATAGGCCATTAGACTCACCTGCTGCTCGTACTAGATCAGCTGTGTGTAAATTACCCATTGAAGAGGTTCAACCTGAGTTAGAAGAAAATGAAAATGTGGATTGTGAGGAAGTTCATACCAAGGAAGTAGGTCCAAAAAAGACAAGAGGTAAGACAAATATGAAAACAATAGCAATGGAGCTTGAAATGAAAGTAAATGTAAGGTACAACAAATATGGACAACCTATTGGAGAAACATCATAGGGGTTGTCCTCATTTTTGGGTTCACTTGTTTGAGAATCGGTGCTAGTGAATGTTGAATCTTGGAAGAAACTTTCAACCCAACAAAAAGAAATATTGTGGCATTCTATTCAAGTATGTAATTTATAGTTATATATTTATATAATGAGTATAATTTGAGCTTTCTTATATACGATTACTATCTAAATGATGTTAGTTGGTTTGTTTAATGAACTATGCTTAGACGCCACTTGTTTCAATCTCTTGTTTAAGTTATTGCCCTTTGAGTAGTGAAGTTTAGTTGAAGTAGGTTTTAAATATTGTGACTTTCTCTAATGCCTTCTGCCTCCACCCCCAATGATCTTTTTTATGTTCCATGTTTTATATACTAAGTATTGACAAAGTATTGGTTAGGCCATTGGATTATTGTCTTCAACTAAATGACTCGTTGCTTGTTCCATGTTTTTTTTAAAGTTATGTTGCCATTTGAGTATTGAACTACCATGTTTTTTAGTTACTATCATTTGAGTATTGAACTGTCATTTTTATAGTTGCTCCATTTGAGTATTAAACTGCCATTTTTATAGTTGTTGCCATTTGAGTATTATACTGCCATTTTTTATAGTTTCTACCATTTGAGTATTGAACTAACATTTTTTTTATAGTTGCTGCCATTTGTGAATTTCTCTAATGCCTTCTTCATCCCCTCCCTCCCCCAATGATCTTTTTTATGTCCTATGTGTTCTTTATTGTTGAGTATTAATTTGTAGTTGGAGTATTGCCATTTGAGTATTGATTTCTTCATCTAGATGACTTATTTCATGAACTATGCTTTACGCCACTTGTTTCGATCTATTGTTTGGTTTTTGCCCTTTGAGAATTAAGGAGTTTTTAAATGTTGTGACTTTCTCTGATGTCTTCTCTGCCCCCACCCCCAATGATCTTTTTTATGTTCCACGTTTTGTTTACTAAGTATTAGTTAGACCATTGGATTAATGCCTTCAATTAAATGACTTGTTGTGACTGTCTCATGTCCCTTCCCCCCCCCCCCCCCCCCCATGACTTTTAAATAGTTACTCTATGTTTTTTTGTTAGAAGCGTATTGAACAAAATCGTGTGGGAGCATCTTTTTCGGGTAGTGTAATTGAAGATGCAATTAGTAGAGTTATCGGTCTAAATCAAGGCTATGTAAGAGGATTAGGATTTGGTGTGACTTGATCGAAGGTGGCTACATCAATTCTAAAAGATAAAACCATCAAATCTCTTGAAAGAAAGTGTAACAACCTAATGTCCGATGTAGATGAGCTGAAAGGTGTGGTAGCTTCCTTACTAAAGGACAAGGTAAATTTGTCATCACACTCTTAAAGTTTCTTAAACTATGTTTTATAGCATATTTTAACATTGTTGTTTAGATAGGAAAAAAACAACTGAACAAAATTTGAATGATCCTGTTGGAGTACCATCATCGACGAATATTCCTACTCCTACTCCTACTCCAATCATAAATTCCCCACTTGTAAATTCATCTGTAACTTTTTTGTTCCTTTATTATTTGAAAATTATTGTTGTTTAAGATTTTTCTAACCATATTATTATTGAAAAAGAGTGTTACTACCAACATTCCCCACAAATGTTTGCTACTAGATTGGATTGGTTCAAGAGAAGTCATTGCTGAAGGTAGATGGATCCGGTCCTCCAATGATCCATCAATTCTTGTCCACCATGTACCTCTTGGCCCCAACGCAGTTCGTGTGTGAGTTGATACAGTAAAAGTATACCAAATTCCTTTTTATGGAGGTTTACTACTGACATTATTGTTATTGACGATGTTGTGGTCACTACTGTAGCATGACCAACGAATAAGGACAAACTATGTAAGAAATTTTATTTACTTTGTGAATTAGGTATTTATTTAGTTTTTTAACTAATTTATTGTTAGAGTTAGATAATGATATTTCTTTTTATTTTTTTCTTGGGTGATTGATGTGTGAAGAAAACAGTGGAACAACACATATGTGGGATTATTTTGGTATTGCTACAATTTGAACATTTTTTTTTACCATATCAAAATTTTGGAATTATATATATGAAGTGATTTTATTTGAATTAAGAATTTAACTATTAGAACAAGTTTAGTTGTTCTAATAGTTAAGGAATTTGTTGGAACTTATAAGCGTTGATGACTATTTCAAACATTGAATGAATATAATGCTTTTTTTTATGTTATAAATTTAAATATTTTGGTTATAATTATGAATGTAGATTTTGATGAATGTGAGGTATATACCTTTCTACTATGACAAATTATGACTTGATCGATAAATATCTATATGATTATAATTTGATTTTACAATAATAATATTGGATAGTTGCTCTTAGCATGTTTTCGATGCTATCGTAACTGATATTTCTTATAGTGTTTGTTATATTTTGAAACCTTCTTATAACCATACTGTTGTAATGATTTCATGGACGTGTTTTCTAAATGTTCTTCCACAATGAATGTTTAAATTATATTTTCAGCTCATTTATGCATTAATTAAAGTAAGTCAGTTCAAGTCAAAGTCAAGTTGGTCAGTAAGTATCATAAGAGGGTTGATGTTTGTTGGCATTATGATAACTTGTAGAAATACAAGTTATAATAGCCTTTTATATTTAATAACGAAGTAGATTCATGATAAAAGTGAGATAACGTGTAACAAATTTCATGAAAAAATGACATATGCGATCTAAGAGTCGCAAAAGACAAAACAACTATCTTATTTCTTATTCGATCATGAACGAGAGGCTCGTATAAGGATAGGAGTGAACTACGTTGAGATCAGAAGCGAGACAGAGAAAACGAGAATGAAAATCAGCGGAATGCGTAGAAGGCGCGAAGCGAAGCGACTGGGAAGGAGTGCAAGGATGACCTTTCTTCTGCTTCCGATATGA

mRNA sequence

ATGTTGCCAACCCTAGTACAGAGAGAGAGAGAGATTAGGGAAACATCACCTTATTCCGACCCACTTCACCACAATAACATGGATTTTGAGGAAGCTACTACTCCACTTCCATCTACACATGCTCGTATAAGGATAGGAGTGAACTACGTTGAGATCAGAAGCGAGACAGAGAAAACGAGAATGAAAATCAGCGGAATGCGTAGAAGGCGCGAAGCGAAGCGACTGGGAAGGAGTGCAAGGATGACCTTTCTTCTGCTTCCGATATGA

Coding sequence (CDS)

ATGTTGCCAACCCTAGTACAGAGAGAGAGAGAGATTAGGGAAACATCACCTTATTCCGACCCACTTCACCACAATAACATGGATTTTGAGGAAGCTACTACTCCACTTCCATCTACACATGCTCGTATAAGGATAGGAGTGAACTACGTTGAGATCAGAAGCGAGACAGAGAAAACGAGAATGAAAATCAGCGGAATGCGTAGAAGGCGCGAAGCGAAGCGACTGGGAAGGAGTGCAAGGATGACCTTTCTTCTGCTTCCGATATGA

Protein sequence

MLPTLVQREREIRETSPYSDPLHHNNMDFEEATTPLPSTHARIRIGVNYVEIRSETEKTRMKISGMRRRREAKRLGRSARMTFLLLPI

Homology

[Close]

BLAST of CsGy2G008220 vs. NCBI nr
Match: KGN61341.1 (hypothetical protein Csa_2G093830 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 6.8e-15
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MLPTLVQREREIRETSPYSDPLHHNNMDFEEATTPLPSTHARIRI 46
          MLPTLVQREREIRETSPYSDPLHHNNMDFEEATTPLPSTH  I I
Sbjct: 1  MLPTLVQREREIRETSPYSDPLHHNNMDFEEATTPLPSTHVNIMI 45

[Close]

BLAST of CsGy2G008220 vs. NCBI nr
Match: KGN44082.1 (hypothetical protein Csa_7G176610 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 9  EREIRETSPYSDPLHHNNMDFEEATTPLPST 40
          EREIRETSPY DPLHHNN+++EEATTPLPS+
Sbjct: 34 EREIRETSPYLDPLHHNNVNYEEATTPLPSS 64

[Close]

BLAST of CsGy2G008220 vs. TrEMBL
Match: tr|A0A0A0LMZ0|A0A0A0LMZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-15
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MLPTLVQREREIRETSPYSDPLHHNNMDFEEATTPLPSTHARIRI 46
          MLPTLVQREREIRETSPYSDPLHHNNMDFEEATTPLPSTH  I I
Sbjct: 1  MLPTLVQREREIRETSPYSDPLHHNNMDFEEATTPLPSTHVNIMI 45

[Close]

BLAST of CsGy2G008220 vs. TrEMBL
Match: tr|A0A0A0K715|A0A0A0K715_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 9  EREIRETSPYSDPLHHNNMDFEEATTPLPST 40
          EREIRETSPY DPLHHNN+++EEATTPLPS+
Sbjct: 34 EREIRETSPYLDPLHHNNVNYEEATTPLPSS 64

The following BLAST results are available for this feature:

BLAST of CsGy2G008220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61341.1	6.8e-15	93.33	hypothetical protein Csa_2G093830 [Cucumis sativus]	[more]
KGN44082.1	4.4e-06	83.87	hypothetical protein Csa_7G176610 [Cucumis sativus]	[more]

BLAST of CsGy2G008220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G008220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G008220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMZ0\|A0A0A0LMZ0_CUCSA	4.5e-15	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1	[more]
tr\|A0A0A0K715\|A0A0A0K715_CUCSA	2.9e-06	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G008220.1	CsGy2G008220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G008220	Csa2G093830	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G008220	CSPI02G07950	Wild cucumber (PI 183967)	cgybcpiB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G008220	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G008220	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G008220	Cucurbita moschata (Rifu)	cgybcmoB246
CsGy2G008220	Cucurbita pepo (Zucchini)	cgybcpeB171
CsGy2G008220	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G008220	Melon (DHL92) v3.6.1	cgybmedB115
CsGy2G008220	Melon (DHL92) v3.5.1	cgybmeB117
CsGy2G008220	Melon (DHL92) v3.5.1	cgybmeB124
CsGy2G008220	Melon (DHL92) v3.6.1	cgybmedB122
CsGy2G008220	Watermelon (Charleston Gray)	cgybwcgB102
CsGy2G008220	Watermelon (Charleston Gray)	cgybwcgB106
CsGy2G008220	Watermelon (97103) v1	cgybwmB150
CsGy2G008220	Silver-seed gourd	carcgybB0249
CsGy2G008220	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G008220	Watermelon (97103) v2	cgybwmbB100
CsGy2G008220	Watermelon (97103) v2	cgybwmbB104
CsGy2G008220	Wax gourd	cgybwgoB134