CsGy2G008000 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G008000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr2 : 6774575 .. 6777553 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAACTTGCACCCTACTTAATTGGGAAGCTTAAGATTTGAGGTTTTAGTTTTTCATTCTTTTCTTTTCCCTTTGAGGTATTCCATTTTTGTATCTGATATCATTGCTTATATATTTTATTTGCCTTGGTGTTTAGTGTTGGGTTAAGGACAATGTTTGTGGTCAGTTTCTGACAGGCACAGTTTGGTATATTAAAAAACATAATGTAAAGTATTAATTAATGATCAGCTATGTTGATGATTCTGGTGGTCTGGAAGTAACTCTAGGCATTAAATTCATTATGTTTGTTGGAGAATAGAAACTGTGATTTTATTTGTATAGTATCATCAACTTATTCTTAATAGTTGTTAGTTGATTTTTTTTTATGACTGAATAAGCTGAACATACTTCCATATGCATTTATTGAATTTCAACCTTCTTTGTTAACGTCTCTTCCCACTTGTACTTGTTGATTTATAATTAAATTCCCTATTTGCTTTTGGTTGTTTACACATTCGTGCAAGTTCTTGGTGCTCTTTTATCTGAATATGAAGACCAGCTGAATTTTCTTAAGAAGCAGCTGGAAGCCAGTGAGAAGTATAAGTTTGAAAGCAATATGAACATGCCATCAATGATAAGAAAAAGCCTGTTGATGACTACATGAAGAAGAACGCACAAATAAGCAAACAAGGCTTAGAGAAGATGGTTTGAGGAAGAATTCTTCAATATTTTGGCTGAGAAGATAAACCTTCATCATCCACCATACTCACACCATTTGGAAGCATATTCTATTTCGTCACTCAAATACTTGAATTGCTATGATGATAAAGTATCTTTGTTTTTTGTTTGTTTGTTTTTCCTGTGATGCAAGAAGATGGATTTAAGGACCAGACAACAAAAATTAAGCAGGCTGAGGAGCATTTGACAACTTTAGAGCTTGAGCTGAAGGTAAAACTTCTTTGATCTTTAAAGATATACGTTGGTGGGTCATTTCTTAACTCATTTATTTATAATGTGTTTACTGAAGTCAGTATCGTTAGATGATTTGATATTCAAAATTTATGTTTTAGGACCTCAATCAAAATAATTAAATAAATAAAATGATCATGGTATGTTACTACATGTTTCAAGGTGATTTCCAACATTTTCAACTTTTACGTGCTATCATATTACAACACGTGGATATCACTTTCTATCTAAATGAGGAAAAGAATATCATTCTTATAAAATAAATGTTTCTTTTACAGGTTGCCGAGTCAAAAATTGGAAGTTATGATGTGAAAGTATGTTCTTTGAGGCATGAAATAAAAGAGCTAAAGGAAAGATTGGAAACCACAAATGCAAGGATTCAATTGTTTGAGAAAGAAGGAAAGATTTTGCAACAATAAAGGGTTCATATTGTAGCTTACACAAGTATGTTAGACATAGATGGAAAGTTTGGGCTATTGTAATTAAGTATGTAATGACCAACTATTAGTAGAATATGATACTAATTAATTGATTTTGTATAAATAATTAATATGAAAAAGTAAAATTATTTATATGATGAAAGATAGTTATAATTGTTTGAAAAATAAGATAATTCATGAGGAGAGATAGTTGATTTGATTGGATGAAAAAAAGATGATATATTTATTTTGGAGAGAGAATAATGATTTAAATAAATAAATAAATATATATATATATATATATATATATATTATAGATTTTGGTGAAAGAATAATAATAATAATAATAAAGTATTATTATTATTATTAATTGTTACGAATGTTTAAGATTTTGTACATTTAAGAAATTTATCGAGGAAAGATAATGGGATAAAAGTATATGTATATATTGTATTATATATATCCTAAAAGGAAAATGAAATAATAATGATAAATAATTATTATGGAGAATTTTTAAAAATAATAGATTTTACAAAATATTTACAACCAATAGTAAATTCTATTACTGATACTCATTGATATGCTATAGTGATAGAATCCAAAATTTTGCTATAGCTTGTAAATATTTTATTTTATTTTGCTATTTTTAAAAATGTCACTATTTAAATCCATAAACAGCAAAAAAAATGCTTAAATTGAAAAGTGAAAGAAAAAAGAAAAGGTCTTTCATTTTTTTAGGTAAGTTTATTATTAGAATTGATCTTAGTTGCATGTCTTTGGAAGGTTCCTCTGGCAAAATTTGAAGATATTAAGTGATGGATTTTTTTCATCAAGATTGAATTGGTTTCAACCTCAATTTTGAAATCAAATTAATTCGAGAATTTTTACTGTCAACTCAAGAATATTTTGTTTGGCTAATCTCAGGTAAGAGATTCTACTATTGGACCTTCGCACATGAATTTAAGAACTTGCATGTATTAATGGTAGTTAAAATGCATAATATGATGATGTCAATGGTGACTGATATGCTTACAGAGCAACAACTCCAAGCAATCGAGGACATTGAAACTACTTACCAGGTGACCAGACAAAAAACGTTGACCAAATTCCACATTTGACGAAAACGAGGTCTCATGTGTTTCTCCCGACATATCGATCGTCAACTACCTCATCGATCCATTTTTTCTCAGCAGTCTCCACATTCAAAAAGTTTGCTCAACCCAATGTTATTGCTATTCTACTAAATTTTAGTAGTGATTTTGATGGATATTGTGTAAATCTCATTTATTAGTTGGAAAAGAAAAATGGTCCATGCATAACAAATAGCCAACAAAGTTTTTTCTTGAAGTGCCATACAATTCTAAGTCTCTCATGTGTGAAGTTACGTCCACAATGAAAAAAGAAGGAATAGGAACGATAATGCATTGGATAAAAACATAGAAAAAGGTAGAAAATGGTTGAAGGGCCGCGGATTGCGCGTTCAGAAAATACTTCAATTATATATATGTATATACACTGATAGGGTGGGAGAGGGCAGAGGTTGGGGCACGTGGGCGGGTTAAGCGTCGGTGAGATAAGACCGGTGAAGGTAAAAGAAGGAAGAAGACTGTGA

mRNA sequence

GTTAACTTGCACCCTACTTAATTGGGAAGCTTAAGATTTGAGGTTTTAGTTTTTCATTCTTTTCTTTTCCCTTTGAGGTATTCCATTTTTGTATCTGATATCATTGCTTATATATTTTATTTGCCTTGGTGTTTAGTGTTGGGTTAAGGACAATGTTTGTGGTCAGTTTCTGACAGGCACAGTTTGGTATATTAAAAAACATAATGTAAAGTATTAATTAATGATCAGCTATGTTGATGATTCTGGTGGTCTGGAAGTAACTCTAGGCATTAAATTCATTATGTTTGTTGGAGAATAGAAACTGTGATTTTATTTGTATAGTATCATCAACTTATTCTTAATAGTTGTTAGTTGATTTTTTTTTATGACTGAATAAGCTGAACATACTTCCATATGCATTTATTGAATTTCAACCTTCTTTGTTAACGTCTCTTCCCACTTGTACTTGTTGATTTATAATTAAATTCCCTATTTGCTTTTGGTTGTTTACACATTCGTGCAAGTTCTTGGTGCTCTTTTATCTGAATATGAAGACCAGCTGAATTTTCTTAAGAAGCAGCTGGAAGCCAGTGAGAAGTATAAGTTTGAAAGCAATATGAACATGCCATCAATGATAAGAAAAAGCCTGTTGATGACTACATGAAGAAGAACGCACAAATAAGCAAACAAGGCTTAGAGAAGATGGTTTGAGGAAGAATTCTTCAATATTTTGGCTGAGAAGATAAACCTTCATCATCCACCATACTCACACCATTTGGAAGCATATTCTATTTCGTCACTCAAATACTTGAATTGCTATGATGATAAAGTATCTTTGTTTTTTGTTTGTTTGTTTTTCCTGTGATGCAAGAAGATGGATTTAAGGACCAGACAACAAAAATTAAGCAGGCTGAGGAGCATTTGACAACTTTAGAGCTTGAGCTGAAGGTTGCCGAGTCAAAAATTGGAAGTTATGATGTGAAAGGTGGGAGAGGGCAGAGGTTGGGGCACGTGGGCGGGTTAAGCGTCGGTGAGATAAGACCGGTGAAGGTAAAAGAAGGAAGAAGACTGTGA

Coding sequence (CDS)

ATGCAAGAAGATGGATTTAAGGACCAGACAACAAAAATTAAGCAGGCTGAGGAGCATTTGACAACTTTAGAGCTTGAGCTGAAGGTTGCCGAGTCAAAAATTGGAAGTTATGATGTGAAAGGTGGGAGAGGGCAGAGGTTGGGGCACGTGGGCGGGTTAAGCGTCGGTGAGATAAGACCGGTGAAGGTAAAAGAAGGAAGAAGACTGTGA

Protein sequence

MQEDGFKDQTTKIKQAEEHLTTLELELKVAESKIGSYDVKGGRGQRLGHVGGLSVGEIRPVKVKEGRRL

Homology

[Close]

BLAST of CsGy2G008000 vs. NCBI nr
Match: XP_004134683.2 (PREDICTED: interferon-induced guanylate-binding protein 2 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MQEDGFKDQTTKIKQAEEHLTTLELELKVAESKIGSYD 39
           ++ED  KD+ TKIKQ EEHLTTL LELKVAESKIGSYD
Sbjct: 689 VKEDELKDKATKIKQVEEHLTTLGLELKVAESKIGSYD 726

[Close]

BLAST of CsGy2G008000 vs. NCBI nr
Match: XP_008439803.1 (PREDICTED: guanylate-binding protein 2 [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 5.5e-04
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 2   QEDGFKDQTTKIKQAEEHLTTLELELKVAESKIG 36
           +ED  KD+  KIKQAEEHLTTL LELKVAESKIG
Sbjct: 690 KEDELKDKAAKIKQAEEHLTTLGLELKVAESKIG 723

[Close]

BLAST of CsGy2G008000 vs. TrEMBL
Match: tr|A0A1S3B0B9|A0A1S3B0B9_CUCME (guanylate-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103484490 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-04
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 2   QEDGFKDQTTKIKQAEEHLTTLELELKVAESKIG 36
           +ED  KD+  KIKQAEEHLTTL LELKVAESKIG
Sbjct: 690 KEDELKDKAAKIKQAEEHLTTLGLELKVAESKIG 723

The following BLAST results are available for this feature:

BLAST of CsGy2G008000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134683.2	2.7e-06	78.95	PREDICTED: interferon-induced guanylate-binding protein 2 [Cucumis sativus]	[more]
XP_008439803.1	5.5e-04	79.41	PREDICTED: guanylate-binding protein 2 [Cucumis melo]	[more]

BLAST of CsGy2G008000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G008000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G008000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B0B9\|A0A1S3B0B9_CUCME	3.7e-04	79.41	guanylate-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103484490 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G008000.1	CsGy2G008000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..33

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G008000	Watermelon (97103) v2	cgybwmbB104
CsGy2G008000	Wax gourd	cgybwgoB132
CsGy2G008000	Cucurbita maxima (Rimu)	cgybcmaB169
CsGy2G008000	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G008000	Cucurbita moschata (Rifu)	cgybcmoB161
CsGy2G008000	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G008000	Cucurbita moschata (Rifu)	cgybcmoB246
CsGy2G008000	Cucurbita pepo (Zucchini)	cgybcpeB153
CsGy2G008000	Cucurbita pepo (Zucchini)	cgybcpeB261
CsGy2G008000	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G008000	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G008000	Melon (DHL92) v3.6.1	cgybmedB115
CsGy2G008000	Melon (DHL92) v3.5.1	cgybmeB117
CsGy2G008000	Watermelon (Charleston Gray)	cgybwcgB102
CsGy2G008000	Watermelon (97103) v1	cgybwmB148
CsGy2G008000	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G008000	Silver-seed gourd	carcgybB0490
CsGy2G008000	Cucumber (Chinese Long) v3	cgybcucB064