CsGy2G007990 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G007990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 6773610 .. 6774567 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCTCGTGCCAATTTTATTGCTAAATCCATCCACCACCAACCAAATTTTGTTTCTTTTTTTCCAGATGCGCAATGCTGAAGCTGTTATCCGTAGTCATAGTAAGGAACGCTATCTTGTAACACTAAGAAACCATCATCAGGTACGGTCAAACTCATGGCATCAAAAATTAAACAAATTCTACATTTTAATCAGGGTTTTCCAGTTCAAAGTTGTTTCATCAAAACGGTCAAATGGAAGTCAGTTTCGTTTTCTGTACTGTTGTGGGATTAACTGGCATATATAGCATTGCTAAATGTCAACTAGCAGATAAGAATTGAATGGAAAAGGTTCTTCCATACTACAACCTAGAAAGTTAAAATTGGATGAAGATTAAATATTTTTCAGATTGGTACTTTATTACTAAAGAATTTTACAACATTTTCTTGATTTTACCTATCTATCTGGAGAGTATTTTCTAGTCTATATGGCTCTTACACAGCTTGAGTGATTCCCAATTCTCTCTTCCTTCTCTTGTACATTTTATGATTACCGTGTTTTTTTTTTATTAATAAACACTAACTATAGTTGTGGCATTTGATATAGACCAGGTTTGTTTTTGTGATTTTGCACCACAAATCTCAAGGTTATTCAGCACTGTATATACCTTTTATCGTCCCCTTGTGTCTTTTAAAATAATTTTAAGTTCCTTCGAACTTTGTAGACGATGAAACCTCTGATTTTGTACAATTTCAAGAAATGGGTTGATTCTGTCTTAATCACTCATTTGTTGCAGTTTAATAACTTAATTTTACAGGCTGACTGTTATCACTATCTCTTTGATGCTGCTATTAAGCTTCATCAAGGCATTGATTAGTCTTCTCCAACTCAGGGTCGGATTGGGAGCATCAAAGGAATCTCAAGCAACATTTCTGTTAAGGCTGGGGCTCAAGGTTTAGATAATAAAATTGAATGGTTG

mRNA sequence

CTTTCTCGTGCCAATTTTATTGCTAAATCCATCCACCACCAACCAAATTTTGTTTCTTTTTTTCCAGATGCGCAATGCTGAAGCTGTTATCCGTAGTCATAGTAAGGAACGCTATCTTGTAACACTAAGAAACCATCATCAGGGTCGGATTGGGAGCATCAAAGGAATCTCAAGCAACATTTCTGTTAAGGCTGGGGCTCAAGGTTTAGATAATAAAATTGAATGGTTG

Coding sequence (CDS)

ATGCGCAATGCTGAAGCTGTTATCCGTAGTCATAGTAAGGAACGCTATCTTGTAACACTAAGAAACCATCATCAGGGTCGGATTGGGAGCATCAAAGGAATCTCAAGCAACATTTCTGTTAAGGCTGGGGCTCAAGGTTTAGATAATAAAATTGAATGGTTG

Protein sequence

MRNAEAVIRSHSKERYLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNKIEWL

Homology

[Close]

BLAST of CsGy2G007990 vs. NCBI nr
Match: XP_011651293.1 (PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 [Cucumis sativus] >KGN57627.1 hypothetical protein Csa_3G233480 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-17
Identity = 48/54 (88.89%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MRNAEAVIRSHSKERYLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNKIEWL 55
           MRNA  VI  HSKE YLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNK EWL
Sbjct: 122 MRNAGGVIHRHSKESYLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNKNEWL 175

[Close]

BLAST of CsGy2G007990 vs. NCBI nr
Match: XP_008456025.1 (PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 isoform X1 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 8.4e-16
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   MRNAEAVIRSHSKERYLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNKIEW 54
           MRNA AVI SHSKE YLVT RNHHQG+IGSIKGISSNISVKAGA+GLDNK +W
Sbjct: 122 MRNAGAVIHSHSKESYLVTQRNHHQGQIGSIKGISSNISVKAGARGLDNKNQW 174

[Close]

BLAST of CsGy2G007990 vs. NCBI nr
Match: XP_008456026.1 (PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 isoform X2 [Cucumis melo])

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-04
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 25  QGRIGSIKGISSNISVKAGAQGLDNKIEW 54
           +G+IGSIKGISSNISVKAGA+GLDNK +W
Sbjct: 121 KGQIGSIKGISSNISVKAGARGLDNKNQW 149

[Close]

BLAST of CsGy2G007990 vs. TrEMBL
Match: tr|A0A0A0LAF4|A0A0A0LAF4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G233480 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-17
Identity = 48/54 (88.89%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MRNAEAVIRSHSKERYLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNKIEWL 55
           MRNA  VI  HSKE YLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNK EWL
Sbjct: 122 MRNAGGVIHRHSKESYLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNKNEWL 175

[Close]

BLAST of CsGy2G007990 vs. TrEMBL
Match: tr|A0A1S3C1U6|A0A1S3C1U6_CUCME (probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496078 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.6e-16
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   MRNAEAVIRSHSKERYLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNKIEW 54
           MRNA AVI SHSKE YLVT RNHHQG+IGSIKGISSNISVKAGA+GLDNK +W
Sbjct: 122 MRNAGAVIHSHSKESYLVTQRNHHQGQIGSIKGISSNISVKAGARGLDNKNQW 174

[Close]

BLAST of CsGy2G007990 vs. TrEMBL
Match: tr|A0A1S3C2D2|A0A1S3C2D2_CUCME (probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496078 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.8e-04
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 25  QGRIGSIKGISSNISVKAGAQGLDNKIEW 54
           +G+IGSIKGISSNISVKAGA+GLDNK +W
Sbjct: 121 KGQIGSIKGISSNISVKAGARGLDNKNQW 149

The following BLAST results are available for this feature:

BLAST of CsGy2G007990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651293.1	3.4e-17	88.89	PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enol...	[more]
XP_008456025.1	8.4e-16	84.91	PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enol...	[more]
XP_008456026.1	5.7e-04	82.76	PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enol...	[more]

BLAST of CsGy2G007990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G007990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G007990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAF4\|A0A0A0LAF4_CUCSA	2.3e-17	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G233480 PE=4 SV=1	[more]
tr\|A0A1S3C1U6\|A0A1S3C1U6_CUCME	5.6e-16	84.91	probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phospha...	[more]
tr\|A0A1S3C2D2\|A0A1S3C2D2_CUCME	3.8e-04	82.76	probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phospha...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0019509	L-methionine biosynthetic process from methylthioadenosine
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043874	acireductone synthase activity
molecular_function	GO:0000287	magnesium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G007990.1	CsGy2G007990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G007990	Cucurbita maxima (Rimu)	cgybcmaB169
CsGy2G007990	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G007990	Cucurbita moschata (Rifu)	cgybcmoB161
CsGy2G007990	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G007990	Cucurbita moschata (Rifu)	cgybcmoB246
CsGy2G007990	Cucurbita pepo (Zucchini)	cgybcpeB153
CsGy2G007990	Cucurbita pepo (Zucchini)	cgybcpeB261
CsGy2G007990	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G007990	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G007990	Melon (DHL92) v3.6.1	cgybmedB115
CsGy2G007990	Melon (DHL92) v3.5.1	cgybmeB117
CsGy2G007990	Watermelon (Charleston Gray)	cgybwcgB102
CsGy2G007990	Watermelon (97103) v1	cgybwmB148
CsGy2G007990	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G007990	Silver-seed gourd	carcgybB0490
CsGy2G007990	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G007990	Watermelon (97103) v2	cgybwmbB104
CsGy2G007990	Wax gourd	cgybwgoB132