CsGy2G007900 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G007900
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Cytochrome b6-f complex subunit 8
Location	Chr2 : 6645606 .. 6651897 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGGTTTCGGAAGATCCGGATCCGCTTCTTGGTGGATGGAGTGGATACCAACCCAGAAATTGAGTTGAGAAGGTCCAATGAATCCGCCATTGGTAGAAACGAATATCTTCCGATTGGGAATTCGTGGCCTCAAATAAGTAAGTTGAAAATGGTGAGACGAAGAGTGTGATGCTGCTGCATATAACAATAGCTTTTCAGAGGTTTCAACCTTAGTTTTAGGGTTTTAGGAACAACAAGAAGAATAAATGGACACTCAAATTCTTTAAATACAATTTTTTTTTCTTTCTTTTTAACTTCCAATTTATATATTAAAATTAAACATCATTGAGTTTTCTTCTACTTTTTCTCTTTTCCTCCATCATCAATACTTCTCCACATTTTTATTTTAAATATCTTTTTCATGTACTTGGAAAATGGTACATTATGAAAAATAGTTTGTAGTATATTTATAAAAAAAAAATGAACTTTCACTCTTCATAGGTTCCCCTCTCATTTATCCTCCAACTTCTTGTCTTTGTTTATCTCTTAGTTTAGACAAGCTCTTGTATATTGATTTTTGCCTCAATTGAAAAGGGCTCAATTCATGTAAGGAGTTTTGTTTTATGTTTGGTTGCTTGTAGCTTATTCAGTTAAATTCTACTAACTTTCAAATGTGGAGGTTTATGTTCTAAATGTGTGGTTTGTACAATGTGAACAAATTATTTATTTACATAAACAAAATGAACGCTTGCAAAAGTAGCAAGTTTAAAAGCTAATAACTCTCTTGTAGTCGTCTGATAGTCCTCTAATAGCAGTATGATATCACTAATTACTTGTCATATTTGTCATATGCAAAAAAAATGTGTCATTTGCTGGGTTTTTTTTAAATGTTTATGTTATCTAACCTAAAGATTTTATAGTATATGAATAAGGTTAGGTGTCATATCCTAGTAGAAATGTGGATATGATCCACTTTATTAAGGTCACAAATGATGTAATCCAAACCGTTCACCTAGATACATGTTTGTGCGTGTGTTTCAGTTAACCCACGGTGCCAAATACTTGGTTGTGTGAGGGTTTGTTGTGACGCGCAAGTTAACTTAGGACTTAAGGAAGCAACCACATACACAATTAATTTTGTGAGATAAGTCATTGGTCATGATCATTGTAGGCGAAGTACTCACTATATACCTCTTTATCGCTTAATTCTTAAGTCCTCGTGTAATACAAGTTTTCCTACTGTTTGCCCAAGTATATGCGAAGCAATGGGTTTATCTAGGTGACTAGAGTCGAACACAGGGAGTTGTTATCAAAGCGATATAAATGAATTAATTAAATAATGTATCAACGGATCAAAACTATCTACGTATGTACGCCTATAGAATCTGTAAATGGGGATAGATGGATACGAAGTGGAGATGTGAATTAACTTGTGTGTGGGAAGGAGATGAAGAAATGTCTATGCATTATTAGGCGATTAAGCAATGCGATATTACTAGCTTAACCAATTTATGATTAATGTGAGCTTCTCTTGAAGTCTTTAGACGCCACACTTGTTCACCTCTCGGGATGCAAACGACTAAGTTTGATTAGACGAGGTATATCTAGAAGAACTCACCTATAATACTTATAGAACTTCAGGATTAAGGACAACAACCTCTCAACGCCTAATATCTACACTTGTTCTCCTTCGAGACACAAATGATGGAAATTTATCTCGCAAGGGGGGTTTGTCTCCAAACTCCTTCTTGTGCACATTAGCCTTATCCTTGCTACTTGCCCTCTCGGGTAGTTGGCGATTGACGATGGGCAGTCGATGAACATAGCTCAACTAACGCGATAAGAATTATATGTTGGTCTTCCTATCAAGAACTTATCACAACTCTAAACTACTAAAAACACATTAACAAATGGAAAGTTAAGAAATGATGGATTGAAAAGGTATAAACATGTAATATATTAACGAGTGTAGACCTTAAGCCATTGTACAATATGAACATCATATATTACAAAGAAATATTAAAAAAATGGAGAGAAAAGAGAAGGGAAAATGTTACAAGTTAGGGAGAATGGAAAACGGAATCTTCACCACTCATACATTAAACTCTCACTTACAGTATGATCACAGAAGAAGAATAAGAAAACATTTACAGACGGTGGGAAGATTAATCCTTTAATTTCCATCGTTCTCTCTAGGGTTCGGTCGGTCTATTCAAACATCTAGGTCATCTTTGCCCATTCAGGCTCTTCATAGGCCCCCCATAGGCCCTCTTCTTCTTGGTAGAGACGAAGTTCTTTTATAGGCATCTTTTTTTTCGAGAAATTTCTATTATTTTGATCATGTCAATCCTGGTACCAGCCTTGTCACGTTACATCAACTTCAACTACCATCCTTGTCGTCTAGTGAATCTTCCTCACATGATGATGTAGTTCCTTGCATAGAGGTGTTAATCACCAAACGATTTCCCATCACATAGCTTTGTGTGAGATGTCCTATGTGATTCACTAGTTTCTTCCTTTCTAATCATCCTACGTTAAGACATGAAAATCATGTAAAATATGCATAATTTTTATGTAAGATGTATTTCTAAATAATTTCTAAATACTTGTGAATTTACAATATAAGTTATGCGTTTTGATCATCTTCTTATGTGTTTTGGCCTCATTATCCCTTTAGACACATCAGGTTCATTACCGTTACATAAACAATTAATTGCTTAAGCCTAAAGTTTTGTTTATAAAATTGTTTTGTTTCCGTAGATGACCTCTAACCTACTACTTGCACTTCGAGGAGACGGGAGCACTCGAGGAATCTGGATGAAATGATATGTTGCACAACATGGGAAGATCCCCATATATCGATCACTCCAGGATAGGCTAAGCCGATCTCGCCACTCATTCACTTCAGTTGTACCATCAAGGTGGTAACATGATACTTTTTCAGTTCGCTTTCTTAAGTGGACTGACATTACACCAGAGTATATCAATCTTGTAAATGACGCTTTTGTTGGAATTTATGTCCTAAACCTCGTAGTTTGTAATCATATTCTATTCAATAAAGTCATTGTTGATACTATAATCTTAAAGCCAATAAACTAAGGACCCGAGGCTATTATTGTGTAAACTTGAACTTTATGTGTAGAGGCATAAATATGGATCAAGTTTAAGTATATAGCTTAAATAGTCTATAGTATATGAATACGGTTCGGCACCTTATTCGGAGAACACTATGGATGTGGTCCGCTTTGTAGTTAGTACAAACGATATGATCCTGAATCGTTCATGTAGAGACATGGAAGTGGGGGCATCCTATGTAAAGAGTTTACATAAGACTATAACTATGAAATAGTCACTTTTAAGTTATAACACCATTAACTTTGTAAAACATACTATTTTGTTTATAAATATCCAATATAACTTAATTTTAATCCAAAGCTAACTAATGAATTTCTGTTCACATGGAATTATCCTTAGATCTGCATAGGTGAGGGCAACTCAATGGTGTTGGCCCAATAAACCTCCCATTTTAGAGTTAAGATCGGGTGGATAGCTAGGGACATAGGGTACAAGACAGAATTCACTCATATCCACACTAGGGTTAGCAAATAGGTTGTTCCCTTAAGAATTGAATTCAGGTCTTGAACAAGGGGTCTCACCCTCTCATTGACGCGAGAGGAATTTGGTTTATAGGTTGGACCTAAAACCAATTGTTCAATAGTGGATCAGTGGGACCTACGGAACAAAATATAGTCTCGGGGGTAAAACGGTACTTTGACCCAATTGAGGTTACGAACAACCTTGTGAAAGATTAACTTACTTATCATGGTTATATCACGTAGACACAAATATATCTATAGTAAGGGGACTGCAACTATATATGAGACTTTAGTGGAATGATCTGTTAGTTAACGAAAGTTGATTATCTCGGTATAAAGAGTTTATCCAGTTAATCTTGGATCTTTGGAGCTCATGATCTATAGGTCCATTAGGTTCCTCTGCTAGTTGACAAGAAATCAACTTATAACATTGTGGTGGAATAATTTGAATTGTTCGAATTAGGTAAAGAGAGAGAAATCAATGAATATATTTGATATAGCCATTGGTTATAAGTTTAAGATAGAGTCTCATGTTTAAATGTGAATTAAATATTAAAAATATGAATAAGGATTCATATTCGAAAGCTCGAAATTGATGGAAAAGGTCTAAGATGTAAAAAGTCAAAATGTTGACTTTTAACTTTGAAATATCAAACTTTGATCGACTTTATATTCAAGTGTGATTTGAATTTTGGAAAAATGAATACAGATTCATACTCGAGAGATTGAAATTAGTCAAGACAGATAAAATGGTAAAAATTAAAAATGTTGAGTTTTGACTTTTTAAATGTCAAATTATCATATTACCCTTAGAAGCACATTGCATGTAACTAACAAATGGCTTCATGCATGTGAGACACCTACTTGGTGATATTCCAAGTATGGAGAGTGAAAACTCACTACTTGCAAATTTTGCATGTAGTTTGCTTATAAATGGATTGCAAATGAAATTTTAGTAGTTGTTTTGGTTGAAATTAATTTTGTACTTTGGAATTGCAAAATCAAACCAAAATTCATTTTCTCTCCACAATTCTCAAAGTCAAGTTCATCATCCTAAATTCATCTCTCTTTATTTTCTCCATCATTCAAGTCCCACAACTCGGTTCCAAGTCTGAAGAATAGTGGGTAAACTCTAGTCGTAGTCTCAGCTTCAAGATCGTGAGGTGATTGCGAAGAGTTGTTGAGGAGATTAGGGTCGTCTTTATAAAGAGTGGATAAGGAATCAAATACAACTACTTGAATTTTTAGAATACTAAGTAGGTTGGCTTTCCTACTAAGGACATCTGCTACCACATTGGTATTGCTGGCCTTATGTTTTATCACAAAGTTAAAACGTTGAATAAAAGAAAGCCACCTAGAATGCATTCTACTAATGCTTTTTTGTGTTTGCAAATATTTGAGCGATAAATGATCAGAGAATATAATGAATTCTTATCCTAAAAGATAGTGTTCCTAAACCTTTAAAGTTTTTACCAAAGAGTATAGCTCTTGTTCGTAGGTGCTCCACTTTTGTCTCGTCTCACTTAACTTTTCACTAAAGTATTCAATTGGATGAGTGTGTTGGGACACGACAACTTCTATTCTCCCACATGCATCAATTGCTACTTCAAATGGTTGTGTAAAATCTGATAGGGGAAGAACGGGTGTGTTGGATAGTCTATTTTTTAAGAACACAAAACTTTGAGTTTGAGAGTTAGTCCAAGAAAAATTTCATTTCTTTAAACATTCCATTAATGGAGATGCTATAATGCTGAAATCTTTTATACATTTTCTATAAAAAGAAGCAAGCCCAAGGAAACTCTGCAATTCTTTTAAGTTTCTTGGTTTTGGCCAATCTTCTATCACCTTTATCTTGTTAGGGTCTACGAAAATTCCAAATTCTTTAATGAGAAAAACTAGGAAGTATATTTGTTGTTAAAGAACACTTCTTGAAATTAATGCTAAGCTTATTTTCTCTGAGTGTTTTAAAAAGTTTATGCAAGTAAGATAAGTGTTCATCATAAGTGTTGATATAAACTAAGATGGCATCAAAATAAACTACTAAGAATTTATTAAGGTAAGGACGTAGAACCTGAGTCATTAACCTTATGAACGTGCTAAACGCGTTAGATAGTCGAATAACATTACCAACCATTCAAAGATGCCATTATTGATCTTGAATGCCGTTTTCCACTCATCTCTAGATCGGACTTGAATTTGATGATATTCGCTCTTTAAGTCGATCTTAGAGAAAAATTTTGCTCCTTCAAGTTGATCAAAGAGATCGGACATTCCGAGAATGGAAAAACATTATCTAATTGTAATTTTGTTGATGGCACGACTGTCCACACAAATTCTCCACTAACTTGTTCCGATAGAATCTCATACTCTTTTAGGCTTATTCTATAGAACCTAGAATGAGATCGATGTTGTGTTGGATATCCCGACGTGGGAATTCTTCTAGCAAACTTTGTATAACTTCATGTTACTAACATTCCACTATTTTGTATAATTTCATCAATGGTGTTGTGCCCGAATCTCTTTTTGACTATGCGCTAGTGATTCCACTATTATTAGTGAATAATAATTATTAGTGAGCAATAATGGAATAATTCTTTTATATTCATAGAGATAGGGGACATAATTCACATGGATATGGTAAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCTCTTTCCCTCGTAGTATGGGGAAGAAGTGGACTC

mRNA sequence

ATTTGGTTTCGGAAGATCCGGATCCGCTTCTTGGTGGATGGAGTGGATACCAACCCAGAAATTGAGTTGAGAAGGTCCAATGAATCCGCCATTGGTAGAAACGAATATCTTCCGATTGGGAATTCGTGGCCTCAAATAAAGATAGGGGACATAATTCACATGGATATGGTAAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCTCTTTCCCTCGTAGTATGGGGAAGAAGTGGACTC

Coding sequence (CDS)

ATTTGGTTTCGGAAGATCCGGATCCGCTTCTTGGTGGATGGAGTGGATACCAACCCAGAAATTGAGTTGAGAAGGTCCAATGAATCCGCCATTGGTAGAAACGAATATCTTCCGATTGGGAATTCGTGGCCTCAAATAAAGATAGGGGACATAATTCACATGGATATGGTAAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCTCTTTCCCTCGTAGTATGGGGAAGAAGTGGACTC

Protein sequence

IWFRKIRIRFLVDGVDTNPEIELRRSNESAIGRNEYLPIGNSWPQIKIGDIIHMDMVSLAWAALMVVFTFSLSLVVWGRSGL

Homology

[Close]

BLAST of CsGy2G007900 vs. NCBI nr
Match: YP_009341770.1 (cytochrome b6/f complex subunit VIII (chloroplast) [Castanopsis concinna] >ALN96563.1 cytochrome b6/f complex subunit VIII (chloroplast) [Castanopsis concinna])

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 46 IKIGDIIHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          ++IGDIIHMD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 3  MEIGDIIHMDIVSLAWAALMVVFTFSLSLVVWGRSGL 39

[Close]

BLAST of CsGy2G007900 vs. NCBI nr
Match: YP_009486123.1 (cytochrome b6/f complex subunit VIII (chloroplast) [Ulmus chenmoui] >AWB12245.1 cytochrome b6/f complex subunit VIII (chloroplast) [Ulmus chenmoui])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 46 IKIGDIIHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          I+I DII+MD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 6  IEIEDIIYMDIVSLAWAALMVVFTFSLSLVVWGRSGL 42

[Close]

BLAST of CsGy2G007900 vs. NCBI nr
Match: YP_004841776.1 (cytochrome b6/f complex subunit VIII [Cucumis melo subsp. melo] >YP_009325982.1 cytochrome b6/f complex subunit VIII (chloroplast) [Citrullus lanatus] >YP_009348024.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus mucosospermus] >YP_009430620.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma cardiospermum] >YP_009439797.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma laxiflorum] >YP_009439884.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma caulopterum] >YP_009439971.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma pentagynum] >YP_009440150.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma longipes] >YP_009440237.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma 'burmanicum'] >YP_009440324.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma pubescens] >YP_009468854.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma compressum] >ABI98738.1 cytochrome b6/f complex subunit VIII (chloroplast) [Cucumis sativus] >AEM76885.1 cytochrome b6/f complex subunit VIII (chloroplast) [Cucumis melo subsp. melo] >AHM88736.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89026.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89085.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89144.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89203.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89262.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89322.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89381.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89440.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89499.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89559.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89618.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89677.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89736.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89795.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89854.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89913.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM89972.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90031.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90090.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90149.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90208.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90267.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90326.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90385.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90444.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90503.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90562.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90621.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90680.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90739.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90798.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90857.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90916.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM90975.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM91034.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >AHM91093.1 cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria] >ALO21754.1 PetN (plastid) [Cucurbita argyrosperma] >ALO21818.1 PetN (plastid) [Cucurbita argyrosperma var. palmeri] >ALO21870.1 PetN (plastid) [Cucurbita argyrosperma subsp. sororia] >ALO21956.1 PetN (plastid) [Cucurbita cordata] >ALO22011.1 PetN (plastid) [Cucurbita digitata] >ALO22028.1 PetN (plastid) [Cucurbita ecuadorensis] >ALO22133.1 PetN (plastid) [Cucurbita ficifolia] >ALO22179.1 PetN (plastid) [Cucurbita foetidissima] >ALO22247.1 PetN (plastid) [Cucurbita lundelliana] >ALO22338.1 PetN (plastid) [Cucurbita maxima subsp. andreana] >ALO22347.1 PetN (plastid) [Cucurbita moschata] >ALO22412.1 PetN (plastid) [Cucurbita okeechobeensis] >ALO22531.1 PetN (plastid) [Cucurbita okeechobeensis subsp. martinezii] >ALO22599.1 PetN (plastid) [Cucurbita pepo subsp. fraterna] >ALO22608.1 PetN (plastid) [Cucurbita pepo subsp. ovifera] >ALO22689.1 PetN (plastid) [Cucurbita pepo var. ozarkana] >ALO22785.1 PetN (plastid) [Cucurbita pepo subsp. pepo] >ALO22849.1 PetN (plastid) [Cucurbita pepo var. texana] >ALO22907.1 PetN (plastid) [Cucurbita pedatifolia] >ANI25178.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma pentaphyllum] >APD52473.1 cytochrome b6/f complex subunit VIII (chloroplast) [Citrullus lanatus] >APW82454.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus lanatus subsp. vulgaris] >APW82539.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus lanatus subsp. vulgaris] >APW82624.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus lanatus subsp. vulgaris] >APW82709.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus mucosospermus] >APW82794.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus mucosospermus] >APW82879.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus lanatus subsp. vulgaris] >APW82964.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus lanatus subsp. vulgaris] >APW83049.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus lanatus subsp. vulgaris] >APW83134.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus lanatus subsp. vulgaris] >APW83219.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus lanatus subsp. vulgaris] >APW83304.1 cytochrome b6/f complex subunit VIII (plastid) [Citrullus mucosospermus] >ART65044.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma pentaphyllum] >ART65130.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma cardiospermum] >ATG86710.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma laxiflorum] >ATG86797.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma caulopterum] >ATG86885.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma pentagynum] >ATG86971.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma longipes] >ATG87058.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma 'burmanicum'] >ATG87145.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma pubescens] >AVA29888.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynostemma compressum])

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 52 IHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          +HMDMVSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 31

[Close]

BLAST of CsGy2G007900 vs. NCBI nr
Match: YP_001294263.1 (cytochrome b6/f complex subunit VIII [Illicium oligandrum] >YP_009186023.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynochthodes nanlingensis] >YP_009318153.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus avellana] >YP_009318232.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus heterophylla] >YP_009318076.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus fargesii] >YP_009331472.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus chinensis] >YP_009366915.1 cytochrome b6/f complex subunit VIII (plastid) [Illicium anisatum] >YP_009365443.1 cytochrome b6/f complex subunit VIII (plastid) [Illicium floridanum] >YP_009365736.1 cytochrome b6/f complex subunit VIII (plastid) [Illicium verum] >YP_009366589.1 cytochrome b6/f complex subunit VIII (plastid) [Illicium henryi] >YP_009428971.1 cytochrome b6/f complex subunit VIII (chloroplast) [Alpinia oxyphylla] >YP_009509839.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus mandshurica] >YP_009510005.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus yunnanensis] >YP_009510088.1 cytochrome b6/f complex subunit VIII (chloroplast) [Ostryopsis davidiana] >YP_009509922.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus ferox var. thibetica] >A6MMT7.1 RecName: Full=Cytochrome b6-f complex subunit 8; AltName: Full=Cytochrome b6-f complex subunit PetN; AltName: Full=Cytochrome b6-f complex subunit VIII >CAF28586.1 petN (chloroplast) [Nymphaea alba] >ABQ52512.1 cytochrome b6/f complex subunit VIII (chloroplast) [Illicium oligandrum] >AKJ77666.1 cytochrome b6/f complex subunit VIII (chloroplast) [Fagopyrum cymosum] >ALO71343.1 cytochrome b6/f complex subunit VIII (chloroplast) [Gynochthodes nanlingensis] >ANP25705.1 cytochrome b6/f complex subunit VIII (chloroplast) [Quercus edithiae] >AOZ20277.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus fargesii] >AOZ20355.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus avellana] >AOZ20434.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus heterophylla] >APF31721.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus chinensis] >APU88553.1 cytochrome b6/f complex subunit VIII (chloroplast) [Tylosema esculentum] >ARJ60988.1 cytochrome b6/f complex subunit VIII (plastid) [Illicium floridanum] >ARJ61320.1 cytochrome b6/f complex subunit VIII (plastid) [Illicium verum] >ARJ62512.1 cytochrome b6/f complex subunit VIII (plastid) [Illicium henryi] >ARJ63267.1 cytochrome b6/f complex subunit VIII (plastid) [Illicium anisatum] >ARO73692.1 cytochrome b6/f complex subunit VIII (chloroplast) [Conyza bonariensis] >ARO73768.1 cytochrome b6/f complex subunit VIII (chloroplast) [Nassella trichotoma] >ARO73822.1 cytochrome b6/f complex subunit VIII (chloroplast) [Solanum elaeagnifolium] >ASW20432.1 cytochrome b6/f complex subunit VIII (chloroplast) [Alpinia oxyphylla] >AXF46571.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus mandshurica] >AXF46654.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus ferox var. thibetica] >AXF46737.1 cytochrome b6/f complex subunit VIII (chloroplast) [Corylus yunnanensis] >AXF46820.1 cytochrome b6/f complex subunit VIII (chloroplast) [Ostryopsis davidiana])

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 51 IIHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          +IHMD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MIHMDIVSLAWAALMVVFTFSLSLVVWGRSGL 32

[Close]

BLAST of CsGy2G007900 vs. NCBI nr
Match: AHM91326.1 (cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 52 IHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          +HMDMVSLAWAALMV+FTFSLSLVVWGRSGL
Sbjct: 1  MHMDMVSLAWAALMVIFTFSLSLVVWGRSGL 31

[Close]

BLAST of CsGy2G007900 vs. TAIR10
Match: ATCG00210.1 (electron transporter, transferring electrons within cytochrome b6/f complex of photosystem IIs)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 54 MDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          MD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29

[Close]

BLAST of CsGy2G007900 vs. Swiss-Prot
Match: sp|A6MMT7|PETN_ILLOL (Cytochrome b6-f complex subunit 8 OS=Illicium oligandrum OX=145286 GN=petN PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-09
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 51 IIHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          +IHMD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MIHMDIVSLAWAALMVVFTFSLSLVVWGRSGL 32

[Close]

BLAST of CsGy2G007900 vs. Swiss-Prot
Match: sp|Q3V541|PETN_ACOCL (Cytochrome b6-f complex subunit 8 OS=Acorus calamus OX=4465 GN=petN PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-08
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 52 IHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          +HMD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MHMDIVSLAWAALMVVFTFSLSLVVWGRSGL 31

[Close]

BLAST of CsGy2G007900 vs. Swiss-Prot
Match: sp|Q4VZP0|PETN_CUCSA (Cytochrome b6-f complex subunit 8 OS=Cucumis sativus OX=3659 GN=petN PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-08
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 54 MDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          MDMVSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MDMVSLAWAALMVVFTFSLSLVVWGRSGL 29

[Close]

BLAST of CsGy2G007900 vs. Swiss-Prot
Match: sp|B5LMM3|PETN_CICAR (Cytochrome b6-f complex subunit 8 OS=Cicer arietinum OX=3827 GN=petN PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.8e-08
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 52 IHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          ++MD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MYMDIVSLAWAALMVVFTFSLSLVVWGRSGL 31

[Close]

BLAST of CsGy2G007900 vs. Swiss-Prot
Match: sp|A4QJJ2|PETN_AETGR (Cytochrome b6-f complex subunit 8 OS=Aethionema grandiflorum OX=72657 GN=petN PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 54 MDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          MD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29

[Close]

BLAST of CsGy2G007900 vs. TrEMBL
Match: tr|A0A1N7TE28|A0A1N7TE28_9ROSI (Cytochrome b6-f complex subunit 8 OS=Castanopsis concinna OX=1754207 GN=petN PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-09
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 46 IKIGDIIHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          ++IGDIIHMD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 3  MEIGDIIHMDIVSLAWAALMVVFTFSLSLVVWGRSGL 39

[Close]

BLAST of CsGy2G007900 vs. TrEMBL
Match: tr|A0A2S0SSS1|A0A2S0SSS1_9ROSA (Cytochrome b6/f complex subunit VIII OS=Ulmus chenmoui OX=1737302 GN=petN PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.5e-08
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 46 IKIGDIIHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          I+I DII+MD+VSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 6  IEIEDIIYMDIVSLAWAALMVVFTFSLSLVVWGRSGL 42

[Close]

BLAST of CsGy2G007900 vs. TrEMBL
Match: tr|X2F7V1|X2F7V1_LAGSI (Cytochrome b6-f complex subunit 8 OS=Lagenaria siceraria OX=3668 GN=petN PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 52 IHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          +HMDMVSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 31

[Close]

BLAST of CsGy2G007900 vs. TrEMBL
Match: tr|A0A1P8LD79|A0A1P8LD79_CITLA (Cytochrome b6-f complex subunit 8 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=petN PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 52 IHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          +HMDMVSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 31

[Close]

BLAST of CsGy2G007900 vs. TrEMBL
Match: tr|G3ETX8|G3ETX8_CUCME (Cytochrome b6-f complex subunit 8 OS=Cucumis melo subsp. melo OX=412675 GN=petN PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 52 IHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 83
          +HMDMVSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MHMDMVSLAWAALMVVFTFSLSLVVWGRSGL 31

The following BLAST results are available for this feature:

BLAST of CsGy2G007900 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009341770.1	6.8e-09	91.89	cytochrome b6/f complex subunit VIII (chloroplast) [Castanopsis concinna] >ALN96...	[more]
YP_009486123.1	1.3e-07	89.19	cytochrome b6/f complex subunit VIII (chloroplast) [Ulmus chenmoui] >AWB12245.1 ...	[more]
YP_004841776.1	1.9e-06	96.77	cytochrome b6/f complex subunit VIII [Cucumis melo subsp. melo] >YP_009325982.1 ...	[more]
YP_001294263.1	1.9e-06	93.75	cytochrome b6/f complex subunit VIII [Illicium oligandrum] >YP_009186023.1 cytoc...	[more]
AHM91326.1	2.4e-06	93.55	cytochrome b6/f complex subunit VIII (chloroplast) [Lagenaria siceraria]	[more]

BLAST of CsGy2G007900 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00210.1	1.1e-08	96.55	electron transporter, transferring electrons within cytochrome b6/f complex of p...	[more]

BLAST of CsGy2G007900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A6MMT7\|PETN_ILLOL	6.1e-09	93.75	Cytochrome b6-f complex subunit 8 OS=Illicium oligandrum OX=145286 GN=petN PE=3 ...	[more]
sp\|Q3V541\|PETN_ACOCL	1.8e-08	93.55	Cytochrome b6-f complex subunit 8 OS=Acorus calamus OX=4465 GN=petN PE=3 SV=1	[more]
sp\|Q4VZP0\|PETN_CUCSA	6.7e-08	100.00	Cytochrome b6-f complex subunit 8 OS=Cucumis sativus OX=3659 GN=petN PE=3 SV=1	[more]
sp\|B5LMM3\|PETN_CICAR	8.8e-08	90.32	Cytochrome b6-f complex subunit 8 OS=Cicer arietinum OX=3827 GN=petN PE=3 SV=1	[more]
sp\|A4QJJ2\|PETN_AETGR	1.9e-07	96.55	Cytochrome b6-f complex subunit 8 OS=Aethionema grandiflorum OX=72657 GN=petN PE...	[more]

BLAST of CsGy2G007900 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1N7TE28\|A0A1N7TE28_9ROSI	4.5e-09	91.89	Cytochrome b6-f complex subunit 8 OS=Castanopsis concinna OX=1754207 GN=petN PE=...	[more]
tr\|A0A2S0SSS1\|A0A2S0SSS1_9ROSA	8.5e-08	89.19	Cytochrome b6/f complex subunit VIII OS=Ulmus chenmoui OX=1737302 GN=petN PE=4 S...	[more]
tr\|X2F7V1\|X2F7V1_LAGSI	1.2e-06	96.77	Cytochrome b6-f complex subunit 8 OS=Lagenaria siceraria OX=3668 GN=petN PE=3 SV...	[more]
tr\|A0A1P8LD79\|A0A1P8LD79_CITLA	1.2e-06	96.77	Cytochrome b6-f complex subunit 8 OS=Citrullus lanatus subsp. vulgaris OX=260674...	[more]
tr\|G3ETX8\|G3ETX8_CUCME	1.2e-06	96.77	Cytochrome b6-f complex subunit 8 OS=Cucumis melo subsp. melo OX=412675 GN=petN ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009512	cytochrome b6f complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0045158	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity

Vocabulary: **Biological Process**
Term	Definition
GO:0017004	cytochrome complex assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR036143	Cytochr_b6-f_cplx_su8_sf
IPR005497	Cytochrome_b6-f_cplx_su8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0045158	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G007900.1	CsGy2G007900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005497	Cytochrome b6-f complex, subunit 8	PFAM	PF03742	PetN	coord: 54..82 e-value: 1.2E-15 score: 56.9
IPR005497	Cytochrome b6-f complex, subunit 8	PANTHER	PTHR35773	FAMILY NOT NAMED	coord: 54..82
IPR005497	Cytochrome b6-f complex, subunit 8	HAMAP	MF_00395	Cytb6_f_PetN	coord: 55..82 score: 14.389
None	No IPR available	PANTHER	PTHR35773:SF1	CYTOCHROME B6-F COMPLEX SUBUNIT 8	coord: 54..82
IPR036143	Cytochrome b6-f complex, subunit 8 superfamily	SUPERFAMILY	SSF103451	PetN subunit of the cytochrome b6f complex	coord: 53..82

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G007900	Watermelon (97103) v1	cgybwmB148
CsGy2G007900	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G007900	Silver-seed gourd	carcgybB0490
CsGy2G007900	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G007900	Watermelon (97103) v2	cgybwmbB104
CsGy2G007900	Wax gourd	cgybwgoB132
CsGy2G007900	Cucurbita maxima (Rimu)	cgybcmaB169
CsGy2G007900	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G007900	Cucurbita moschata (Rifu)	cgybcmoB161
CsGy2G007900	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G007900	Cucurbita moschata (Rifu)	cgybcmoB246
CsGy2G007900	Cucurbita pepo (Zucchini)	cgybcpeB163
CsGy2G007900	Cucurbita pepo (Zucchini)	cgybcpeB261
CsGy2G007900	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G007900	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G007900	Melon (DHL92) v3.6.1	cgybmedB115
CsGy2G007900	Melon (DHL92) v3.5.1	cgybmeB117
CsGy2G007900	Watermelon (Charleston Gray)	cgybwcgB102