CsGy2G007420 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G007420
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ubiquitin carboxyl-terminal hydrolase
Location	Chr2 : 5975145 .. 5975634 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTATGGGGTTTTATTTTCTTTCATTCTCTTGCTCTTTCTTGCTCAAAACGCCATTGAAGGGACCTCAATCCACGTAAGCACTCAAATTCCACTTCTCTTCAAATCCCTCATTTCCAAAATTCGAAACCCCATTTCTTTCCCTCTCCCCTAAATCGATTTCATCAATGTTCTGTTTCTGAGATTGAATACTGAGCTGATTGTTTGTGTTTGTTGTTTCTTAGGTTAATGAGTCCGATCAAGAACCGATAATGGTACCATTGATGGAGACGACGACGACGACGGCGATGATGATGAACAGCGGTGGCCGGAGACAGCTGAAGAGCTTCCAAATATGTGCTCTCTGTACTTGCTGTGGTGGCGCTAGAGGAATGTGCCTTCCATCGCCTTGTTGCTATGCTATAAACTGTAACATTCCTAATAGGCCTTTTGGGTTTTGCTCTTTTACTCCAAAGACATGTAACTGCTTTGGCTGTCATATTTAA

mRNA sequence

ATGTCTTCTTATGGGGTTTTATTTTCTTTCATTCTCTTGCTCTTTCTTGCTCAAAACGCCATTGAAGGGACCTCAATCCACGTTAATGAGTCCGATCAAGAACCGATAATGGTACCATTGATGGAGACGACGACGACGACGGCGATGATGATGAACAGCGGTGGCCGGAGACAGCTGAAGAGCTTCCAAATATGTGCTCTCTGTACTTGCTGTGGTGGCGCTAGAGGAATGTGCCTTCCATCGCCTTGTTGCTATGCTATAAACTGTAACATTCCTAATAGGCCTTTTGGGTTTTGCTCTTTTACTCCAAAGACATGTAACTGCTTTGGCTGTCATATTTAA

Coding sequence (CDS)

ATGTCTTCTTATGGGGTTTTATTTTCTTTCATTCTCTTGCTCTTTCTTGCTCAAAACGCCATTGAAGGGACCTCAATCCACGTTAATGAGTCCGATCAAGAACCGATAATGGTACCATTGATGGAGACGACGACGACGACGGCGATGATGATGAACAGCGGTGGCCGGAGACAGCTGAAGAGCTTCCAAATATGTGCTCTCTGTACTTGCTGTGGTGGCGCTAGAGGAATGTGCCTTCCATCGCCTTGTTGCTATGCTATAAACTGTAACATTCCTAATAGGCCTTTTGGGTTTTGCTCTTTTACTCCAAAGACATGTAACTGCTTTGGCTGTCATATTTAA

Protein sequence

MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMETTTTTAMMMNSGGRRQLKSFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI

Homology

[Close]

BLAST of CsGy2G007420 vs. NCBI nr
Match: KGN61259.1 (hypothetical protein Csa_2G074210 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-48
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLK 60
           MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLK
Sbjct: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLK 60

Query: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
           SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI
Sbjct: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 113

[Close]

BLAST of CsGy2G007420 vs. NCBI nr
Match: XP_023546744.1 (uncharacterized protein LOC111805758 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 3.8e-42
Identity = 85/113 (75.22%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLK 60
           MS YGVLFS I LLFLA NAIE TSIHVN+SDQEP+MVPLM                 L+
Sbjct: 12  MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLM-EKMETTAMVINGGRRQLR 71

Query: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
           SFQICALCTCCGGARG+C+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 72  SFQICALCTCCGGARGVCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 123

[Close]

BLAST of CsGy2G007420 vs. NCBI nr
Match: XP_022149801.1 (uncharacterized protein LOC111018147 isoform X1 [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 5.4e-41
Identity = 84/114 (73.68%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLM-XXXXXXXXXXXXXXXXXL 60
           M S+GV FS I +LFLAQNAIE TSI+VN SDQEP+MVPLM                  L
Sbjct: 2   MPSHGVAFSLIFVLFLAQNAIEATSIYVNVSDQEPMMVPLMGLGEKMETAVVMSGGRRRL 61

Query: 61  KSFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
           +SFQ+CALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI
Sbjct: 62  RSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 115

[Close]

BLAST of CsGy2G007420 vs. NCBI nr
Match: XP_022965498.1 (uncharacterized protein LOC111465383 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 81/114 (71.05%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNE-SDQEPIMVPLMXXXXXXXXXXXXXXXXXL 60
           MS YGV+F  I +LFLA +AIE TS H N  SDQEP+MVPLM                 L
Sbjct: 1   MSPYGVVFRLIFVLFLAHDAIEATSNHGNRWSDQEPMMVPLMENVETMTAVAMNGNRRQL 60

Query: 61  KSFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
           +SFQ+CALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI
Sbjct: 61  RSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114

[Close]

BLAST of CsGy2G007420 vs. NCBI nr
Match: XP_023536878.1 (uncharacterized protein LOC111798131 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 5.1e-39
Identity = 81/114 (71.05%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNE-SDQEPIMVPLMXXXXXXXXXXXXXXXXXL 60
           M  YGV+F  I +LFLA +AIE TS H N  SDQEP+MVPLM                 L
Sbjct: 1   MLRYGVVFRLIFVLFLAHDAIEATSNHGNRWSDQEPMMVPLMENVETMTAVAMNGNRRQL 60

Query: 61  KSFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
           KSFQ+CALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI
Sbjct: 61  KSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114

[Close]

BLAST of CsGy2G007420 vs. TAIR10
Match: AT1G65295.1 (unknown protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-29
Identity = 60/113 (53.10%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 2   SSYGVLFSFILLL-FLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLK 61
           S   ++F  +LL      ++ +   +   E D E +MVPL                  L 
Sbjct: 7   SKISIVFLLLLLFSIFISSSHQANEVLPAEGDNEMMMVPL----GEEKFMVMNETRRKLG 66

Query: 62  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
           SFQIC++CTCCGGA+G+CLPSPCCYAINCNIPNRPFG+CSFTPKTCNCFGCHI
Sbjct: 67  SFQICSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCHI 115

[Close]

BLAST of CsGy2G007420 vs. TAIR10
Match: AT5G01015.1 (unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 33/112 (29.46%), Postives = 50/112 (44.64%), Query Frame = 0


Query: 2   SSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLKS 61
           S + V+F  +L   L     +G    +N  +  P+ V +                  +  
Sbjct: 4   SLHSVIFLGLLATILVTTNGQGDGTGLNAEEMWPVEVGM---------EYRVWRRKLMTP 63

Query: 62  FQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
            ++C  C CC      C   PCC+ INC +PN+PFG C+F PK+C+C  C I
Sbjct: 64  LELCLECKCCSST--TCATMPCCFGINCQLPNKPFGVCAFVPKSCHCNSCSI 104

[Close]

BLAST of CsGy2G007420 vs. TrEMBL
Match: tr|A0A0A0LJJ1|A0A0A0LJJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074210 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 8.0e-49
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLK 60
           MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLK
Sbjct: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMXXXXXXXXXXXXXXXXXLK 60

Query: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
           SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI
Sbjct: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 113

[Close]

BLAST of CsGy2G007420 vs. TrEMBL
Match: tr|A0A2P6R529|A0A2P6R529_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0447971 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-32
Identity = 75/115 (65.22%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 2   SSYGVLFSFILLLFLAQ--NAIEGTSIHVNESD--QEPIMVPLMXXXXXXXXXXXXXXXX 61
           SSYGV+ S ILLLFLA    + E +  H N SD   EP  VPL+                
Sbjct: 4   SSYGVILSLILLLFLATEVTSTEPSLTHANGSDIVDEPPFVPLI-EAEKLKTLVLNETRR 63

Query: 62  XLKSFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCH 113
            L SFQICALCTCCGGARG+CLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCH
Sbjct: 64  RLGSFQICALCTCCGGARGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCH 117

[Close]

BLAST of CsGy2G007420 vs. TrEMBL
Match: tr|A0A2P4H297|A0A2P4H297_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_35576 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.9e-32
Identity = 72/114 (63.16%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLM-XXXXXXXXXXXXXXXXXL 60
           MS+YGV  S ILLL LA NA+  +  H+N S+ E +MVP++                  L
Sbjct: 1   MSAYGVTLSLILLLCLA-NAVNYSEAHINGSETE-MMVPMVESGRMEKMMTVMNDSRRRL 60

Query: 61  KSFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
            SFQICALCTCCGGA+G+CLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCH+
Sbjct: 61  GSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHL 112

[Close]

BLAST of CsGy2G007420 vs. TrEMBL
Match: tr|W9S703|W9S703_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015121 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 73/120 (60.83%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLA---QNAIEGTSIHVNES----DQEPIMVPLMXXXXXXXXXXXX 60
           M +YGV+FS ILLLFLA       E +  H+N S     +EP +VPL+            
Sbjct: 2   MPAYGVIFSLILLLFLATVITTKTEASLAHINGSAAVAAEEPPLVPLV--EEGKMEMMMN 61

Query: 61  XXXXXLKSFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114
                L SFQICALCTCCGGARG+CLPSPCCYAINCNIP+RPFGFCSFTPKTCNCFGCH+
Sbjct: 62  ESRRKLGSFQICALCTCCGGARGVCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCHL 119

[Close]

BLAST of CsGy2G007420 vs. TrEMBL
Match: tr|A0A2P5B9R0|A0A2P5B9R0_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_258820 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-30
Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSSYGVLFSFILLLFLAQ--NAIEGTSIHVN-------ESDQEPIMVPLMXXXXXXXXXX 60
           M +YGV++S +LLLFLA      E + + VN       ES + P +VPL+          
Sbjct: 2   MPAYGVIYSLVLLLFLATVITNTEASLVQVNGSVAAAEESAEVPPLVPLV--EPGKVEMM 61

Query: 61  XXXXXXXLKSFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGC 114
                  L SFQICALCTCCGGA+G+CLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGC
Sbjct: 62  MNESRRRLGSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGC 121

The following BLAST results are available for this feature:

BLAST of CsGy2G007420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61259.1	1.2e-48	100.00	hypothetical protein Csa_2G074210 [Cucumis sativus]	[more]
XP_023546744.1	3.8e-42	75.22	uncharacterized protein LOC111805758 [Cucurbita pepo subsp. pepo]	[more]
XP_022149801.1	5.4e-41	73.68	uncharacterized protein LOC111018147 isoform X1 [Momordica charantia]	[more]
XP_022965498.1	2.3e-39	71.05	uncharacterized protein LOC111465383 [Cucurbita maxima]	[more]
XP_023536878.1	5.1e-39	71.05	uncharacterized protein LOC111798131 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy2G007420 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65295.1	1.2e-29	53.10	unknown protein	[more]
AT5G01015.1	2.5e-11	29.46	unknown protein	[more]

BLAST of CsGy2G007420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G007420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJJ1\|A0A0A0LJJ1_CUCSA	8.0e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074210 PE=4 SV=1	[more]
tr\|A0A2P6R529\|A0A2P6R529_ROSCH	5.2e-32	65.22	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0447971 PE=4...	[more]
tr\|A0A2P4H297\|A0A2P4H297_QUESU	8.9e-32	63.16	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_35576 PE=4 SV=1	[more]
tr\|W9S703\|W9S703_9ROSA	2.0e-31	60.83	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015121 PE=4 SV=1	[more]
tr\|A0A2P5B9R0\|A0A2P5B9R0_PARAD	1.3e-30	58.20	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_258820 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G007420.1	CsGy2G007420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33786	FAMILY NOT NAMED	coord: 7..112
None	No IPR available	PANTHER	PTHR33786:SF2	SUBFAMILY NOT NAMED	coord: 7..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G007420	Cla007943	Watermelon (97103) v1	cgybwmB148
CsGy2G007420	Csa2G074210	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G007420	MELO3C008739	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G007420	ClCG11G010770	Watermelon (Charleston Gray)	cgybwcgB102
CsGy2G007420	CSPI02G07190	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G007420	CmaCh12G009570	Cucurbita maxima (Rimu)	cgybcmaB169
CsGy2G007420	CmaCh05G007540	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G007420	CmoCh12G009570	Cucurbita moschata (Rifu)	cgybcmoB161
CsGy2G007420	CmoCh05G007970	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G007420	Lsi11G008640	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G007420	Cp4.1LG07g07990	Cucurbita pepo (Zucchini)	cgybcpeB261
CsGy2G007420	Cp4.1LG11g06790	Cucurbita pepo (Zucchini)	cgybcpeB163
CsGy2G007420	MELO3C008739.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G007420	CsaV3_2G009650	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G007420	Cla97C11G216980	Watermelon (97103) v2	cgybwmbB104
CsGy2G007420	Bhi06G000981	Wax gourd	cgybwgoB132
CsGy2G007420	Carg19839	Silver-seed gourd	carcgybB0179
CsGy2G007420	Carg26540	Silver-seed gourd	carcgybB0714

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None