CsGy2G007130 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G007130
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMaturase K
LocationChr2 : 5669045 .. 5669488 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACGCCGAGAATTAGGAAAAGTGACAAGAAAGAAGTGGGTGTTGTGGCAGAGTAATGTGAAAGATGTTTTGGGATGTTGAAGAAGAGAAGAATTAGGAAAAGAAAAAATAATAATTTAAAAAAAAAATTAGTTAAGATTTGGTGGGAGATTGGAAAAAGTTTTAATAAAATTTTTTAAAAGAAAAAAATATGAAAGAAATATGAAAAAATGATAGAACTTCAATCTAATTATCTACTAAAATGCACCCAAACTTTTTAATATTTTAGAAAAATCTCCTTAGTCGATAGTGATCGAGTTTTCACAGAAATCTCGGCAACGTGACTTCCTATACCCACTTATCTTTCGGGAGTATATTTACGCATTTTCTCATGATCATTTTTTAAATGGATCCATTTTGTTGGAAAATTCTGGTTATGACAAAAAATCCAGTTTACTAATG

mRNA sequence

ATGGAACGCCGAGAATTAGGAAAAGTGACAAGAAAGAAGTGGGTGTTGTGGCAGAGTAATTCGATAGTGATCGAGTTTTCACAGAAATCTCGGCAACGTGACTTCCTATACCCACTTATCTTTCGGGAGTATATTTACGCATTTTCTCATGATCATTTTTTAAATGGATCCATTTTGTTGGAAAATTCTGGTTATGACAAAAAATCCAGTTTACTAATG

Coding sequence (CDS)

ATGGAACGCCGAGAATTAGGAAAAGTGACAAGAAAGAAGTGGGTGTTGTGGCAGAGTAATTCGATAGTGATCGAGTTTTCACAGAAATCTCGGCAACGTGACTTCCTATACCCACTTATCTTTCGGGAGTATATTTACGCATTTTCTCATGATCATTTTTTAAATGGATCCATTTTGTTGGAAAATTCTGGTTATGACAAAAAATCCAGTTTACTAATG

Protein sequence

MERRELGKVTRKKWVLWQSNSIVIEFSQKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Homology
[Close]
BLAST of CsGy2G007130 vs. NCBI nr
Match: YP_247580.1 (maturase K [Cucumis sativus] >CAJ00739.1 maturase (chloroplast) [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. NCBI nr
Match: AHM88688.1 (maturase K (chloroplast) [Lagenaria siceraria] >AHM88978.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89214.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89273.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89392.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89510.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89983.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90219.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90278.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90396.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90632.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90986.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM91045.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM91278.1 maturase K (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. NCBI nr
Match: YP_009456128.1 (maturase K (chloroplast) [Lagenaria siceraria] >AHM89037.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89096.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89155.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89333.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89451.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89570.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89629.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89688.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89747.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89806.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89865.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM89924.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90042.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90101.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90160.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90337.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90514.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90691.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90750.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90809.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90868.1 maturase K (chloroplast) [Lagenaria siceraria] >AHM90927.1 maturase K (chloroplast) [Lagenaria siceraria] >AUJ21894.1 maturase K (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. NCBI nr
Match: AHM90455.1 (maturase K (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. NCBI nr
Match: AHM90573.1 (maturase K (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. TAIR10
Match: ATCG00040.1 (maturase K)

HSP 1 Score: 51.6 bits (122), Expect = 2.4e-07
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 30 SRQRDFLYPLIFREYIYAFSHDHFL-----NGSILLENSGYDKKSSLLM 74
          +RQ+ FLYPL FREYIY  ++DH L     N  I LEN+ YDKK S L+
Sbjct: 35 ARQQSFLYPLFFREYIYVLAYDHGLNRLNRNRYIFLENADYDKKYSSLI 83

[Close]
BLAST of CsGy2G007130 vs. Swiss-Prot
Match: sp|Q2QDA7|MATK_CUCSA (Maturase K OS=Cucumis sativus OX=3659 GN=matK PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. Swiss-Prot
Match: sp|B1NWD1|MATK_MANES (Maturase K OS=Manihot esculenta OX=3983 GN=matK PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-12
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 29 KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +SR+ DFLYP IFREYIY F+HDH LN SILLEN GYD KSSLL+
Sbjct: 10 RSRKNDFLYPFIFREYIYTFAHDHSLNRSILLENVGYDNKSSLLI 54

[Close]
BLAST of CsGy2G007130 vs. Swiss-Prot
Match: sp|Q7HUK6|MATK_MENLI (Maturase K OS=Mentzelia lindleyi OX=86878 GN=matK PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-12
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 31 RQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +Q DFLYPLIF+EYIYA +HDH LN SILLEN+GYDKKSSLL+
Sbjct: 14 QQHDFLYPLIFQEYIYALAHDHGLNRSILLENAGYDKKSSLLI 56

[Close]
BLAST of CsGy2G007130 vs. Swiss-Prot
Match: sp|Q8WJ37|MATK_SYZAN (Maturase K OS=Syzygium anisatum OX=178109 GN=matK PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-12
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 29 KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +SRQ DFLYPL+FREYIYA +HDH LN SIL EN+GYDKKSS ++
Sbjct: 12 RSRQHDFLYPLLFREYIYALAHDHGLNRSILFENAGYDKKSSSII 56

[Close]
BLAST of CsGy2G007130 vs. Swiss-Prot
Match: sp|Q5YK50|MATK_CERSL (Maturase K OS=Ceratonia siliqua OX=20340 GN=matK PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-12
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 29 KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +SRQ DFLYPLIFREYIYA ++DH LN SIL+EN GYD KSSLL+
Sbjct: 12 RSRQHDFLYPLIFREYIYALAYDHGLNSSILVENLGYDNKSSLLI 56

[Close]
BLAST of CsGy2G007130 vs. TrEMBL
Match: tr|X2F5H9|X2F5H9_LAGSI (Maturase K OS=Lagenaria siceraria OX=3668 GN=matK PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. TrEMBL
Match: tr|X2F4M9|X2F4M9_LAGSI (Maturase K OS=Lagenaria siceraria OX=3668 GN=matK PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. TrEMBL
Match: tr|A0A249RY06|A0A249RY06_CUCME (Maturase K OS=Cucumis melo subsp. agrestis OX=217619 GN=matK PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. TrEMBL
Match: tr|A0A286NFX4|A0A286NFX4_CUCME (Maturase K OS=Cucumis melo var. flexuosus OX=1120798 GN=matK PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

[Close]
BLAST of CsGy2G007130 vs. TrEMBL
Match: tr|A0A1P8LDQ0|A0A1P8LDQ0_CITLA (Maturase K OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=matK PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 QKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 74
          +KSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM
Sbjct: 11 EKSRQRDFLYPLIFREYIYAFSHDHFLNGSILLENSGYDKKSSLLM 56

The following BLAST results are available for this feature:
BLAST of CsGy2G007130 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_247580.11.3e-1697.83maturase K [Cucumis sativus] >CAJ00739.1 maturase (chloroplast) [Cucumis sativus... [more]
AHM88688.11.3e-1697.83maturase K (chloroplast) [Lagenaria siceraria] >AHM88978.1 maturase K (chloropla... [more]
YP_009456128.11.3e-1697.83maturase K (chloroplast) [Lagenaria siceraria] >AHM89037.1 maturase K (chloropla... [more]
AHM90455.11.3e-1697.83maturase K (chloroplast) [Lagenaria siceraria][more]
AHM90573.11.3e-1697.83maturase K (chloroplast) [Lagenaria siceraria][more]
BLAST of CsGy2G007130 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00040.12.4e-0755.10maturase K[more]
BLAST of CsGy2G007130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q2QDA7|MATK_CUCSA4.4e-1997.83Maturase K OS=Cucumis sativus OX=3659 GN=matK PE=3 SV=1[more]
sp|B1NWD1|MATK_MANES1.4e-1275.56Maturase K OS=Manihot esculenta OX=3983 GN=matK PE=3 SV=1[more]
sp|Q7HUK6|MATK_MENLI1.8e-1279.07Maturase K OS=Mentzelia lindleyi OX=86878 GN=matK PE=3 SV=1[more]
sp|Q8WJ37|MATK_SYZAN1.8e-1273.33Maturase K OS=Syzygium anisatum OX=178109 GN=matK PE=3 SV=1[more]
sp|Q5YK50|MATK_CERSL2.3e-1275.56Maturase K OS=Ceratonia siliqua OX=20340 GN=matK PE=3 SV=1[more]
BLAST of CsGy2G007130 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|X2F5H9|X2F5H9_LAGSI8.9e-1797.83Maturase K OS=Lagenaria siceraria OX=3668 GN=matK PE=3 SV=1[more]
tr|X2F4M9|X2F4M9_LAGSI8.9e-1797.83Maturase K OS=Lagenaria siceraria OX=3668 GN=matK PE=3 SV=1[more]
tr|A0A249RY06|A0A249RY06_CUCME8.9e-1797.83Maturase K OS=Cucumis melo subsp. agrestis OX=217619 GN=matK PE=3 SV=1[more]
tr|A0A286NFX4|A0A286NFX4_CUCME8.9e-1797.83Maturase K OS=Cucumis melo var. flexuosus OX=1120798 GN=matK PE=3 SV=1[more]
tr|A0A1P8LDQ0|A0A1P8LDQ0_CITLA8.9e-1797.83Maturase K OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=matK PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR002866Maturase_MatK
IPR024942Maturase_MatK_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0008380 RNA splicing
biological_process GO:0008033 tRNA processing
cellular_component GO:0009507 chloroplast
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G007130.1CsGy2G007130.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024942Maturase MatK, N-terminal domainPFAMPF01824MatK_Ncoord: 28..73
e-value: 1.2E-17
score: 64.5
IPR002866Maturase MatKPANTHERPTHR34811FAMILY NOT NAMEDcoord: 27..73

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G007130Cucumber (Chinese Long) v3cgybcucB064
CsGy2G007130Watermelon (97103) v2cgybwmbB104
CsGy2G007130Wax gourdcgybwgoB132
CsGy2G007130Cucurbita maxima (Rimu)cgybcmaB169
CsGy2G007130Cucurbita maxima (Rimu)cgybcmaB252
CsGy2G007130Cucurbita moschata (Rifu)cgybcmoB161
CsGy2G007130Cucurbita moschata (Rifu)cgybcmoB240
CsGy2G007130Cucurbita pepo (Zucchini)cgybcpeB163
CsGy2G007130Cucurbita pepo (Zucchini)cgybcpeB261
CsGy2G007130Cucumber (Chinese Long) v2cgybcuB056
CsGy2G007130Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G007130Melon (DHL92) v3.5.1cgybmeB120
CsGy2G007130Melon (DHL92) v3.6.1cgybmedB118
CsGy2G007130Watermelon (Charleston Gray)cgybwcgB102
CsGy2G007130Watermelon (97103) v1cgybwmB155
CsGy2G007130Wild cucumber (PI 183967)cgybcpiB056
CsGy2G007130Silver-seed gourdcarcgybB0004
CsGy2G007130Silver-seed gourdcarcgybB0179