CsGy2G007090 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G007090
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionlow-molecular-weight cysteine-rich 48
LocationChr2 : 5650480 .. 5650859 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATAATCTCATCGAAGCATAAGGATCCAAATCGTCTCAGAGACATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAAGTATGCTCTTTAACTCATAAGTACTCTAATTCCATACAACTATTTTTGCTAGAACAATATTTTATACCATGTTATCTTTGTTAATATGGCAGCAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGACAATAATTGATTGCGT

mRNA sequence

CAATAATCTCATCGAAGCATAAGGATCCAAATCGTCTCAGAGACATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAACAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGACAATAATTGATTGCGT

Coding sequence (CDS)

ATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAACAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGA

Protein sequence

MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV
Homology
[Close]
BLAST of CsGy2G007090 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]
BLAST of CsGy2G007090 vs. NCBI nr
Match: KGN61229.1 (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVL+IF CI STTKGDVLNVHCVRPC DTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]
BLAST of CsGy2G007090 vs. NCBI nr
Match: KGN61227.1 (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 6.2e-25
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 23 TTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 76
          T KGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]
BLAST of CsGy2G007090 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-09
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

[Close]
BLAST of CsGy2G007090 vs. TrEMBL
Match: tr|A0A0A0LHG9|A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.0e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]
BLAST of CsGy2G007090 vs. TrEMBL
Match: tr|A0A0A0LJG5|A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVL+IF CI STTKGDVLNVHCVRPC DTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]
BLAST of CsGy2G007090 vs. TrEMBL
Match: tr|A0A0A0LKF5|A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.1e-25
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 23 TTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 76
          T KGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]
BLAST of CsGy2G007090 vs. TrEMBL
Match: tr|A0A0A0L1R8|A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:
BLAST of CsGy2G007090 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61228.11.2e-36100.00hypothetical protein Csa_2G071930 [Cucumis sativus][more]
KGN61229.12.1e-3393.24hypothetical protein Csa_2G072430 [Cucumis sativus][more]
KGN61227.16.2e-2594.34hypothetical protein Csa_2G070930 [Cucumis sativus][more]
KGN54497.12.8e-0950.00hypothetical protein Csa_4G339000 [Cucumis sativus][more]
BLAST of CsGy2G007090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G007090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G007090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LHG9|A0A0A0LHG9_CUCSA8.0e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
tr|A0A0A0LJG5|A0A0A0LJG5_CUCSA1.4e-3393.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
tr|A0A0A0LKF5|A0A0A0LKF5_CUCSA4.1e-2594.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
tr|A0A0A0L1R8|A0A0A0L1R8_CUCSA1.8e-0950.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G007090.1CsGy2G007090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRODOMPD864278coord: 20..73
e-value: 8.0E-5
score: 103.0
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G007090Cucurbita maxima (Rimu)cgybcmaB169
CsGy2G007090Cucurbita maxima (Rimu)cgybcmaB252
CsGy2G007090Cucurbita moschata (Rifu)cgybcmoB161
CsGy2G007090Cucurbita moschata (Rifu)cgybcmoB240
CsGy2G007090Cucurbita pepo (Zucchini)cgybcpeB163
CsGy2G007090Cucurbita pepo (Zucchini)cgybcpeB261
CsGy2G007090Cucumber (Chinese Long) v2cgybcuB056
CsGy2G007090Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G007090Melon (DHL92) v3.5.1cgybmeB120
CsGy2G007090Melon (DHL92) v3.6.1cgybmedB118
CsGy2G007090Watermelon (Charleston Gray)cgybwcgB102
CsGy2G007090Watermelon (97103) v1cgybwmB155
CsGy2G007090Wild cucumber (PI 183967)cgybcpiB056
CsGy2G007090Silver-seed gourdcarcgybB0004
CsGy2G007090Silver-seed gourdcarcgybB0179
CsGy2G007090Cucumber (Chinese Long) v3cgybcucB064
CsGy2G007090Watermelon (97103) v2cgybwmbB104
CsGy2G007090Wax gourdcgybwgoB132