CsGy2G006950 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G006950
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr2 : 5505992 .. 5506612 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCTGAAAAAGATTTCAATAGACCCAAGTGCCCACCGAAGCACCTGGTTCAGCCGATCAGACAAGTTGATGGGAGCTGTACCCTTAAATGCAGGTCTCTTTGGCATGCAGTATATGGATCTCCAGCCACGACAGTGCATTTTGAAGCCTGTTAGAATATCTTCTGTGATAGATCCGTAAATCCAGCCCAACTGTACACACAAACATGACATAAGTTCCAGTTTTTCTTAACTATATCCAGACCATATCTGACAATAACTTTTTGTTGGATTTAGGTGTTAGCGTGACAATAGCAAAACAAGGAGGAAGGTAGTGTTCAGATGTTTTCTAAAGTAAGAATTGTCGACATTACCTCTGTACCCCATTCGGTTTTGTCTTCATAACCACAACTGATTACATGAATTGCTTCCTTAAGCAGGGCTGCTGGACTCGAGGAGGGTGGAACACCACCTTCTTCCATCAAAGTAGACGTAACAAAAATTGATGACTGTCCAAATTTCTTTTCGAAATTCATTTGTGACATCAGTAGCTCCTTGTCATCTGCCAGTACTACTCATATAGCAACAATAAATAGGAGTTATCACAGTATGATGGTAATGTATCCACCAAGATGCTAA

mRNA sequence

ATGGTTGCTGAAAAAGATTTCAATAGACCCAAGTGCCCACCGAAGCACCTGGTTCAGCCGATCAGACAAGTTGATGGGAGCTGTACCCTTAAATGCAGGGCTGCTGGACTCGAGGAGGGTGGAACACCACCTTCTTCCATCAAAGTAGACGTAACAAAAATTGATGACTGTCCAAATTTCTTTTCGAAATTCATTTGTGACATCAGTAGCTCCTTGTCATCTGCCAGTACTACTCATATAGCAACAATAAATAGGAGTTATCACAGTATGATGGTAATGTATCCACCAAGATGCTAA

Coding sequence (CDS)

ATGGTTGCTGAAAAAGATTTCAATAGACCCAAGTGCCCACCGAAGCACCTGGTTCAGCCGATCAGACAAGTTGATGGGAGCTGTACCCTTAAATGCAGGGCTGCTGGACTCGAGGAGGGTGGAACACCACCTTCTTCCATCAAAGTAGACGTAACAAAAATTGATGACTGTCCAAATTTCTTTTCGAAATTCATTTGTGACATCAGTAGCTCCTTGTCATCTGCCAGTACTACTCATATAGCAACAATAAATAGGAGTTATCACAGTATGATGGTAATGTATCCACCAAGATGCTAA

Protein sequence

MVAEKDFNRPKCPPKHLVQPIRQVDGSCTLKCRAAGLEEGGTPPSSIKVDVTKIDDCPNFFSKFICDISSSLSSASTTHIATINRSYHSMMVMYPPRC
Homology
[Close]
BLAST of CsGy2G006950 vs. NCBI nr
Match: PON99352.1 (hypothetical protein TorRG33x02_048950 [Trema orientalis])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 34 AAGLEEGGTPPSSIKVDVTKIDDCPNFFSKFICDISSSLSSASTTHIATIN 85
          AAGLEEGGTPPS IKV+VT I DCPNFFSKFI DIS SLSS++ T    IN
Sbjct: 37 AAGLEEGGTPPSIIKVEVTNIADCPNFFSKFIWDISISLSSSTATQKTNIN 87

[Close]
BLAST of CsGy2G006950 vs. NCBI nr
Match: PON70445.1 (hypothetical protein PanWU01x14_081140 [Parasponia andersonii])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 34 AAGLEEGGTPPSSIKVDVTKIDDCPNFFSKFICDISSSLSSASTTHIATIN 85
          AAGLEEGGTPPS IKV+VT I DCPNFFSKFI DIS SLSS++ T    IN
Sbjct: 37 AAGLEEGGTPPSIIKVEVTNIADCPNFFSKFIWDISISLSSSTATQKMNIN 87

[Close]
BLAST of CsGy2G006950 vs. TrEMBL
Match: tr|A0A2P5FNG9|A0A2P5FNG9_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_048950 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 34 AAGLEEGGTPPSSIKVDVTKIDDCPNFFSKFICDISSSLSSASTTHIATIN 85
          AAGLEEGGTPPS IKV+VT I DCPNFFSKFI DIS SLSS++ T    IN
Sbjct: 37 AAGLEEGGTPPSIIKVEVTNIADCPNFFSKFIWDISISLSSSTATQKTNIN 87

[Close]
BLAST of CsGy2G006950 vs. TrEMBL
Match: tr|A0A2P5DAX2|A0A2P5DAX2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_081140 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 34 AAGLEEGGTPPSSIKVDVTKIDDCPNFFSKFICDISSSLSSASTTHIATIN 85
          AAGLEEGGTPPS IKV+VT I DCPNFFSKFI DIS SLSS++ T    IN
Sbjct: 37 AAGLEEGGTPPSIIKVEVTNIADCPNFFSKFIWDISISLSSSTATQKMNIN 87

[Close]
BLAST of CsGy2G006950 vs. TrEMBL
Match: tr|A0A0E0B333|A0A0E0B333_9ORYZ (Uncharacterized protein OS=Oryza glumipatula OX=40148 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.9e-08
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 34  AAGLEEGGTPPSSIKVDVTKIDDCPNFFSKFICDISSSLS 74
           AAGL++GGTPPSSI VDVT   DCPN FSKFICD+S SLS
Sbjct: 314 AAGLDDGGTPPSSISVDVTNAADCPNRFSKFICDMSISLS 353

The following BLAST results are available for this feature:
BLAST of CsGy2G006950 vs. NCBI nr
Match NameE-valueIdentityDescription
PON99352.11.9e-1074.51hypothetical protein TorRG33x02_048950 [Trema orientalis][more]
PON70445.12.5e-1074.51hypothetical protein PanWU01x14_081140 [Parasponia andersonii][more]
BLAST of CsGy2G006950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G006950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G006950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5FNG9|A0A2P5FNG9_9ROSA1.3e-1074.51Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_048950 PE=4 S... [more]
tr|A0A2P5DAX2|A0A2P5DAX2_PARAD1.7e-1074.51Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_081140 PE... [more]
tr|A0A0E0B333|A0A0E0B333_9ORYZ5.9e-0877.50Uncharacterized protein OS=Oryza glumipatula OX=40148 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G006950.1CsGy2G006950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G006950ClCG11G011280Watermelon (Charleston Gray)cgybwcgB102
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G006950Cucurbita maxima (Rimu)cgybcmaB169
CsGy2G006950Cucurbita maxima (Rimu)cgybcmaB252
CsGy2G006950Cucurbita moschata (Rifu)cgybcmoB161
CsGy2G006950Cucurbita moschata (Rifu)cgybcmoB240
CsGy2G006950Cucurbita pepo (Zucchini)cgybcpeB163
CsGy2G006950Cucurbita pepo (Zucchini)cgybcpeB261
CsGy2G006950Cucumber (Chinese Long) v2cgybcuB056
CsGy2G006950Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G006950Melon (DHL92) v3.5.1cgybmeB120
CsGy2G006950Melon (DHL92) v3.6.1cgybmedB118
CsGy2G006950Watermelon (97103) v1cgybwmB155
CsGy2G006950Wild cucumber (PI 183967)cgybcpiB056
CsGy2G006950Silver-seed gourdcarcgybB0004
CsGy2G006950Silver-seed gourdcarcgybB0179
CsGy2G006950Cucumber (Chinese Long) v3cgybcucB064
CsGy2G006950Watermelon (97103) v2cgybwmbB104
CsGy2G006950Wax gourdcgybwgoB128
CsGy2G006950Wax gourdcgybwgoB132