CsGy2G003650 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G003650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	TMV resistance protein N-like
Location	Chr2 : 2487570 .. 2488259 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTCTTAGTGAGCAGCCTTAATAGATTGTAAGTTGCTTGAAGATATTCCAAAGGTTCCAAAAGAGGTAGTCCGTGTGAATTCTACAAGGTGCGTATCATTGGCCAGATTTCCTGAAAACATACATGATTTTATATGTTGTAACGATAATGTGGTGCGTATCATTTCTTTCTCATGAACCCATGTCTTGTGTATTTCATTCTTATAAGAATTAAGTGTGCTTTGTTAATTAACATAACATTTAGCTATTTACTCTGATCGTGCATGAATATAAAAAATATTGAGTAAGCAAAGAACTCATATTAATGAATTGTGACATTTCAAATTGGTTCAAGTACAAGGGTATGAACAATTCAATACTGTTTGTTTTTCCAGCTGATTATCTAAGTTGAAAAAGGAAGGCTGTTATTGCTCTTTGTGTCAAATTTCAAGTTACTATTGATCTCGAGCTGGTTCAGCTTAAATATAGTGTGTTTATCAACGATATTGAAGTAAGTAAACACTTTTGGATGGATAAGATATCAGGAGGTGAGTATCTATGGATGGCAGTACTTGATCCTTGTATACATCTAAACCCATATGGTGACGACATTGTGGACAGCTCACCGAAGATTGATCTAAATCAACCATGTTTTAGGATTAGTTCCTCGAGAAGTATTTTGGATAAAATTACAGTGTTATTTGAG

mRNA sequence

ATGGCCTTAATAGATTGTAAGTTGCTTGAAGATATTCCAAAGGTTCCAAAAGAGGTAGTCCGTGTGAATTCTACAAGGTGCGTATCATTGGCCAGATTTCCTGAAAACATACATGATTTTATATGTTGTAACGATAATGTGGCTGTTATTGCTCTTTGTGTCAAATTTCAAGTTACTATTGATCTCGAGCTGGTTCAGCTTAAATATAGTGTGTTTATCAACGATATTGAAGTAAGTAAACACTTTTGGATGGATAAGATATCAGGAGGTGAGTATCTATGGATGGCAGTACTTGATCCTTGTATACATCTAAACCCATATGGTGACGACATTGTGGACAGCTCACCGAAGATTGATCTAAATCAACCATGTTTTAGGATTAGTTCCTCGAGAAGTATTTTGGATAAAATTACAGTGTTATTTGAG

Coding sequence (CDS)

ATGGCCTTAATAGATTGTAAGTTGCTTGAAGATATTCCAAAGGTTCCAAAAGAGGTAGTCCGTGTGAATTCTACAAGGTGCGTATCATTGGCCAGATTTCCTGAAAACATACATGATTTTATATGTTGTAACGATAATGTGGCTGTTATTGCTCTTTGTGTCAAATTTCAAGTTACTATTGATCTCGAGCTGGTTCAGCTTAAATATAGTGTGTTTATCAACGATATTGAAGTAAGTAAACACTTTTGGATGGATAAGATATCAGGAGGTGAGTATCTATGGATGGCAGTACTTGATCCTTGTATACATCTAAACCCATATGGTGACGACATTGTGGACAGCTCACCGAAGATTGATCTAAATCAACCATGTTTTAGGATTAGTTCCTCGAGAAGTATTTTGGATAAAATTACAGTGTTATTTGAG

Protein sequence

MALIDCKLLEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICCNDNVAVIALCVKFQVTIDLELVQLKYSVFINDIEVSKHFWMDKISGGEYLWMAVLDPCIHLNPYGDDIVDSSPKIDLNQPCFRISSSRSILDKITVLFE

Homology

[Close]

BLAST of CsGy2G003650 vs. NCBI nr
Match: XP_016901487.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 89/186 (47.85%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 5   DCKLLEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICC--------------------- 64
           DCKLLE+IPK+P+  V +N++ CVSLARFP+NI DFI C                     
Sbjct: 776 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 835

Query: 65  ------------NDNV---------------AVIALCVKFQVTIDLELVQLKYSVFINDI 124
                       N+++               A IA CVK QVT       L Y VFIND 
Sbjct: 836 CDIPDWCKYKSTNNSITFLFPVIDYLSWKRKAFIAPCVKIQVT--AYPFHLAYRVFINDF 895

Query: 125 EVSKHFWMDKISGGEYLWMAVLDPCIHLNPYGDDIVDSSPKIDLNQPCFRISSSRSILDK 143
           EV K FWMD  S GEYLWM VLDPC+H NPYGD         DLNQP FRI+SSR ILDK
Sbjct: 896 EVRKSFWMDDRSRGEYLWMQVLDPCVHFNPYGD---------DLNQPRFRINSSRGILDK 950

[Close]

BLAST of CsGy2G003650 vs. NCBI nr
Match: XP_011650100.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 82/180 (45.56%), Postives = 94/180 (52.22%), Query Frame = 0


Query: 7   KLLEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICCNDNV------------------- 66
           KLLE+IPK+P+ VVR+N   C+S  RFP+NI DFI C+DNV                   
Sbjct: 513 KLLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNVVCILMTSSLMYKSMNNSLT 572

Query: 67  --------------AVIALCVKFQV-TIDLELVQLKYSVFINDIEV---------SKHFW 126
                           IA CVKFQV TID E VQ++  VFINDIEV              
Sbjct: 573 FLFLVIDYLSWKKKTFIAPCVKFQVTTIDHERVQIECRVFINDIEVWGGMSSSIFDLRLI 632

Query: 127 MDKISGGEYLWMAVLDPCIH-LNPYGDDIVDSSPKIDLNQPCFRISSSRSILDKITVLFE 143
             KIS GEYLWM VL PC H LN  GDDI+DSSP           +SS  +LDKI VLFE
Sbjct: 633 SGKISRGEYLWMTVLHPCRHRLNSCGDDIMDSSP-----------NSSIGMLDKIRVLFE 681

[Close]

BLAST of CsGy2G003650 vs. NCBI nr
Match: XP_008454955.1 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 4.9e-23
Identity = 78/197 (39.59%), Postives = 102/197 (51.78%), Query Frame = 0


Query: 4    IDCKLLEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICC-------------------- 63
            +DC+LLE+I KVP+ V+  ++  C SLARFP+N+ DFI C                    
Sbjct: 855  MDCELLEEISKVPEGVICTSAAGCKSLARFPDNLADFISCGNSAECCKGGELKQLVLMNC 914

Query: 64   -----------NDNV--------------AVIALCVKFQVTIDLELVQLKYSVFINDIEV 123
                       ND++              A+ A CVKF+VT D    +L+  VFINDI+V
Sbjct: 915  DIPDWYRYKSMNDSLTFFLPADYPSWKWKALFAPCVKFEVTNDDWFQKLECKVFINDIQV 974

Query: 124  -----------SKHFWMDKISGGEYLWMAVLDPCIHLNPYGDDIVD-SSPK-IDLNQPCF 143
                        +     K+S GEY+W+ VLDP  H   Y DDI+D  SPK IDLNQP F
Sbjct: 975  WSSEEVYPNQKERSGMFGKVSPGEYMWLIVLDPHTHFQSYSDDIMDRRSPKIIDLNQPSF 1034

[Close]

BLAST of CsGy2G003650 vs. NCBI nr
Match: KGN61139.1 (hypothetical protein Csa_2G059700 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 81/190 (42.63%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 9    LEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICCNDNV--------------------- 68
            LE+I KVPK VVR+++  CVSLARFP NI DFI C+DNV                     
Sbjct: 825  LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 69   -------------------------AVIALCVKFQVTIDLELVQLKYSV-FINDIEV--- 128
                                     A IALCVKF VT D ELV+L   V FINDIEV   
Sbjct: 885  WCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIEVWSR 944

Query: 129  ----SKHFWMDKISGGEYLWMAVLDPCIH--LNPYGDDIVDSSPKIDLNQPCFRISSSRS 143
                + +FW   +S GE LWMAVL PC+H  +NPYGDDI+D SP   +            
Sbjct: 945  MSISNFNFW---LSRGECLWMAVLHPCMHRLINPYGDDIMDISPNFSIG----------I 1001

[Close]

BLAST of CsGy2G003650 vs. NCBI nr
Match: XP_011650121.1 (PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 81/190 (42.63%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 9   LEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICCNDNV--------------------- 68
           LE+I KVPK VVR+++  CVSLARFP NI DFI C+DNV                     
Sbjct: 636 LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 695

Query: 69  -------------------------AVIALCVKFQVTIDLELVQLKYSV-FINDIEV--- 128
                                    A IALCVKF VT D ELV+L   V FINDIEV   
Sbjct: 696 WCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIEVWSR 755

Query: 129 ----SKHFWMDKISGGEYLWMAVLDPCIH--LNPYGDDIVDSSPKIDLNQPCFRISSSRS 143
               + +FW   +S GE LWMAVL PC+H  +NPYGDDI+D SP   +            
Sbjct: 756 MSISNFNFW---LSRGECLWMAVLHPCMHRLINPYGDDIMDISPNFSIG----------I 812

[Close]

BLAST of CsGy2G003650 vs. TrEMBL
Match: tr|A0A1S4DZR7|A0A1S4DZR7_CUCME (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.7e-33
Identity = 89/186 (47.85%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 5   DCKLLEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICC--------------------- 64
           DCKLLE+IPK+P+  V +N++ CVSLARFP+NI DFI C                     
Sbjct: 776 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 835

Query: 65  ------------NDNV---------------AVIALCVKFQVTIDLELVQLKYSVFINDI 124
                       N+++               A IA CVK QVT       L Y VFIND 
Sbjct: 836 CDIPDWCKYKSTNNSITFLFPVIDYLSWKRKAFIAPCVKIQVT--AYPFHLAYRVFINDF 895

Query: 125 EVSKHFWMDKISGGEYLWMAVLDPCIHLNPYGDDIVDSSPKIDLNQPCFRISSSRSILDK 143
           EV K FWMD  S GEYLWM VLDPC+H NPYGD         DLNQP FRI+SSR ILDK
Sbjct: 896 EVRKSFWMDDRSRGEYLWMQVLDPCVHFNPYGD---------DLNQPRFRINSSRGILDK 950

[Close]

BLAST of CsGy2G003650 vs. TrEMBL
Match: tr|A0A1S3C0Y9|A0A1S3C0Y9_CUCME (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495240 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 78/197 (39.59%), Postives = 102/197 (51.78%), Query Frame = 0


Query: 4    IDCKLLEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICC-------------------- 63
            +DC+LLE+I KVP+ V+  ++  C SLARFP+N+ DFI C                    
Sbjct: 855  MDCELLEEISKVPEGVICTSAAGCKSLARFPDNLADFISCGNSAECCKGGELKQLVLMNC 914

Query: 64   -----------NDNV--------------AVIALCVKFQVTIDLELVQLKYSVFINDIEV 123
                       ND++              A+ A CVKF+VT D    +L+  VFINDI+V
Sbjct: 915  DIPDWYRYKSMNDSLTFFLPADYPSWKWKALFAPCVKFEVTNDDWFQKLECKVFINDIQV 974

Query: 124  -----------SKHFWMDKISGGEYLWMAVLDPCIHLNPYGDDIVD-SSPK-IDLNQPCF 143
                        +     K+S GEY+W+ VLDP  H   Y DDI+D  SPK IDLNQP F
Sbjct: 975  WSSEEVYPNQKERSGMFGKVSPGEYMWLIVLDPHTHFQSYSDDIMDRRSPKIIDLNQPSF 1034

[Close]

BLAST of CsGy2G003650 vs. TrEMBL
Match: tr|A0A0A0LJ96|A0A0A0LJ96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-22
Identity = 81/190 (42.63%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 9    LEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICCNDNV--------------------- 68
            LE+I KVPK VVR+++  CVSLARFP NI DFI C+DNV                     
Sbjct: 825  LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 69   -------------------------AVIALCVKFQVTIDLELVQLKYSV-FINDIEV--- 128
                                     A IALCVKF VT D ELV+L   V FINDIEV   
Sbjct: 885  WCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIEVWSR 944

Query: 129  ----SKHFWMDKISGGEYLWMAVLDPCIH--LNPYGDDIVDSSPKIDLNQPCFRISSSRS 143
                + +FW   +S GE LWMAVL PC+H  +NPYGDDI+D SP   +            
Sbjct: 945  MSISNFNFW---LSRGECLWMAVLHPCMHRLINPYGDDIMDISPNFSIG----------I 1001

[Close]

BLAST of CsGy2G003650 vs. TrEMBL
Match: tr|A0A1S3CPA7|A0A1S3CPA7_CUCME (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103503265 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.0e-22
Identity = 73/193 (37.82%), Postives = 96/193 (49.74%), Query Frame = 0


Query: 4   IDCKLLEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICCNDN----------------- 63
           I CKLLE+IP +P+ VV +++  CVSLARFP NIH FI C+DN                 
Sbjct: 315 IGCKLLEEIPNIPEGVVCMDAGGCVSLARFPNNIHSFISCHDNNVEYERGLSKELILMNC 374

Query: 64  ----------------------------VAVIALCVKFQVT-IDLELVQLKYSVFINDIE 123
                                        A+   C KF+VT  +     LK  VFIN I+
Sbjct: 375 EIPDWYRYKSMNNSITFLLPADHLSWKRKALFVPCFKFEVTNYEDWRFALKCKVFINGIQ 434

Query: 124 V-------------SKHF-WMDKISGGEYLWMAVLDPCIHLNPYGDDIVDSSPKIDLNQP 137
           V              + F   D+  GGEY+ M V+DPC+H +P+GDD +D+S +IDLNQP
Sbjct: 435 VWDSQSSLTCFPDWGRSFRGYDESRGGEYMSMIVIDPCLHFHPFGDDNMDNSREIDLNQP 494

[Close]

BLAST of CsGy2G003650 vs. TrEMBL
Match: tr|E7CHD0|E7CHD0_CUCSA (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus var. hardwickii OX=319220 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 72/197 (36.55%), Postives = 97/197 (49.24%), Query Frame = 0


Query: 4    IDCKLLEDIPKVPKEVVRVNSTRCVSLARFPENIHDFICCNDNV---------------- 63
            +DC+LLE+I KVPK V+ +++   +SLARFP N+ +F+ C+D+V                
Sbjct: 820  MDCELLEEISKVPKGVICMSAAGSISLARFPNNLAEFMSCDDSVEYCKGGELKQLVLMNC 879

Query: 64   -----------------------------AVIALCVKFQVTIDLELVQLKYSVFINDIEV 123
                                         A+ A CVKF+VT D    +L+  VFINDI+V
Sbjct: 880  HIPDWYRYKSMSDSLTFFLPADYLSWKWKALFAPCVKFEVTNDDWFQKLECKVFINDIQV 939

Query: 124  -----------SKHFWMDKISGGEYLWMAVLDPCIHLNPYGDDIVD--SSPKIDLNQPCF 143
                        +     K+S GEY+W+ VLDP      Y DDI+D  S   IDLNQ   
Sbjct: 940  WSSEEVYANQKERSGMFGKVSPGEYMWLIVLDPHTRFQSYSDDIMDRRSLKIIDLNQLSS 999

The following BLAST results are available for this feature:

BLAST of CsGy2G003650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901487.1	1.2e-32	47.85	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
XP_011650100.1	1.3e-23	45.56	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus]	[more]
XP_008454955.1	4.9e-23	39.59	PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo]	[more]
KGN61139.1	5.4e-22	42.63	hypothetical protein Csa_2G059700 [Cucumis sativus]	[more]
XP_011650121.1	5.4e-22	42.63	PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Cucumis sativus]	[more]

BLAST of CsGy2G003650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G003650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G003650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZR7\|A0A1S4DZR7_CUCME	7.7e-33	47.85	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1	[more]
tr\|A0A1S3C0Y9\|A0A1S3C0Y9_CUCME	3.3e-23	39.59	TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495240...	[more]
tr\|A0A0A0LJ96\|A0A0A0LJ96_CUCSA	3.6e-22	42.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV=1	[more]
tr\|A0A1S3CPA7\|A0A1S3CPA7_CUCME	8.0e-22	37.82	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103503265 PE=4 SV=1	[more]
tr\|E7CHD0\|E7CHD0_CUCSA	4.4e-20	36.55	Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus var. hardwickii OX=319220 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G003650.1	CsGy2G003650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G003650	MELO3C004311.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G003650	CsaV3_2G004880	Cucumber (Chinese Long) v3	cgybcucB064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G003650	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G003650	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G003650	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G003650	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G003650	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G003650	Cucurbita pepo (Zucchini)	cgybcpeB271
CsGy2G003650	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G003650	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G003650	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G003650	Watermelon (Charleston Gray)	cgybwcgB119
CsGy2G003650	Watermelon (97103) v1	cgybwmB140
CsGy2G003650	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G003650	Silver-seed gourd	carcgybB0713
CsGy2G003650	Watermelon (97103) v2	cgybwmbB114