CsGy2G002260 (gene) Cucumber (Gy14) v2

NameCsGy2G002260
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprostatic spermine-binding protein-like
LocationChr2 : 1487750 .. 1490232 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAAAGCCCTAATCGGACCAAACCCTAGGGTTTACTCTAACCGGACCACTAAACCCACCTTTTTTTCTTCTCTCTCTCTCTCAATTTTCCAGAAAAACCATTCGCTTTCTCCCCATCTTCTTCTTCTTCTTCTACTTCCAGCTCCCCCTCTCTTTCTGCAACTTCCCTTTTTTCCTTTCTCTTCGTTTTCTCTTCACTTCACTTTCTTTTTCCGCTGTCATGGAGTTGGACAAAGTGGGTTACTCCCTGGACGACACTTCTCTTTGGTTTCCTTCTGTTTTGGAAGCTTTGACGGTGGAGGCTCTTCTCACTGCTGCTAACTCTCTTGCTTGGTTTTTAACCACGGTGAGTTCTTTATTTTCATTTTTTTATCAGATGGGCTTTGTTTCTTTTGGTTTCTGCTGCTTCTTTTTCATGATTTTTGCTTCTTCAACCTCTAATTTAGTGGTTCTTTGCATTTTTTTGTGTTAACTTTCTTCATTTCTTCTCTATTCCTTTACTGGGTTTTTGCAGTTTACTAGCTTTTTTGGCTTTTGTTGTGGTTACTTTTCTTTCTTACCCTATTTTTTAGTTGTGATGTGGAGTTTTAGCTGCAAATGTTGAGTATTGACTTGTTGGTGGAGGCTAAGAGAACTGCTTGTTGTAGTCTCTAGTGGTTAGTTTGGATGGGAGGCTATGTTTTTAACTTCATTTCATATTTTGACAATGAAGAAAGGATTTATATTGTACTCCAAATTCCTTGTGAACATTGGGGAAATCCCGCTTATTGAGGAATAAGATGTTAGAAATGAGGATTTGAGATTTGGAGGCTATATTTGTAAGGTACATGTTGGTGGATTGAGTATAGACTTCGCCTTTACTGTTGTCTGGAGTGGTCAATGTTGCTTCTAATTCTTTAGACTTTGGTGTAATTTGGCATCTTTGAAATGTCCATTTTATTATCTGAATTTGAGCTTAGTGCAGTCATATTAAATACTTATCCGTTTCTTGTGACTTTGGTTTGTCAAGGTTTAGCTATCCTCGGTGCTTTTGGTTGTAAGTGTATTCTCCTGTGTGTTAGAATTTATTGTCTGATCATTGTAGACTATGCTTTCTGATTGCTTTCGGGAAATTCCCTTTTCTGTTCTTGTAATTAACAGAATTAAAATCAAGTCATGTTGGGATTTCTTGAGATTTTCCTTTCCTAACATATCATTTGAATCAACCTGTTAGTGGAAGGGGGATCGGCAAATTTCACTCAATTTCCATATCTGTTTCTTTTAATCTCGTCTTAAAAGACTTTTTCCAATCCTGATTGTACTTCTCGATAAGCCGTGGTTGTACTTTTATAACAGTATAATTCAGTGTGCAGTTCCCTGATCTTATTGAAGTAATAGTGTGATGTTAATTGGATGCAATGAACAAGATTTTTAAATCTCAATTCATTTTCCAACATAATTTAAGTTTTCTTCAGGCAGGAGCTCTGTTAAATGATGTCAATGCTCCACCAGGATTCACTGCAATTGGGAAAAAGTAATTAAAAGTTTCGTTTTTTTTGTGTCTTTGACTTTCTACTCAATTGGTTCCGAGATTACTGATTTGTTTGTACTTCTGCCTGGCTCAGCTTTCCTTTTGAAGAACTTCATGCAAAGAATAATCCAGATCGAGAAAATGTAGATGGCAGTGAAACAGAGGATGATAAAGATGGGGATGAAGTTGATGATGATGATGCAAATGACCAGGATGGAGGGGAAGATGTTGAAGATTTCTCAGCCGAAGAAGGTGATGACGGAGATCTAGAAGATGACCCTGAAGCAAGTGGCAATGGAAGGGCCGGAGGAGATGAGGAGGATGATGGAGAAGATGACGATGACGATGCAAATGATCCAGATGAAGATGACGACGACGATGATGATGAAGATTTCTCCGCTGAAGAAGGGGATGAGGGTGATCAAGAGGATGACCCTGAAGCAAGTGGTAATGGAAGAATTGAAGGTGTTGAGGAGGAAGACGATGACGACGACGACGACGATGGAGATGAGGACGACGACGATGACGATGAAGAGGATGAAGATGACGAGGACGAAGATGATGACGAGGAAACACTCGAACCACCAGCTAAGAGAAGAAAGTGAAAATGTTGATTGCTTCTTTCCTTTTTCTGTTATCAGTGTTTCACTTCCCCTTTGTGTCTGGAGTTTGAAGTAACTAGTGAGGGGAACTTAGCCAGTCAGCCTTGGCATTTAGGGGTAGCAAGATTGTTGACCTTGTTATTAATGAACTTCCTAAAATTTATGTTGTGGATCCACATTATATATCACAATTTATTTTGCTAAAATGCACAAGGTTTTCTTCTACAATTTATTGGTTGGGACGGTTGGTTTCACCTGGTTGTTTGACAACTAACACTTCAACTCAGGACACCATAGGAGTTTTTCAATTTGAATGAATTGATTCAAATGACTAAATAAGAAAAAAATGTTGAATATCGGCAAGAGCCAG

mRNA sequence

AAACAAAGCCCTAATCGGACCAAACCCTAGGGTTTACTCTAACCGGACCACTAAACCCACCTTTTTTTCTTCTCTCTCTCTCTCAATTTTCCAGAAAAACCATTCGCTTTCTCCCCATCTTCTTCTTCTTCTTCTACTTCCAGCTCCCCCTCTCTTTCTGCAACTTCCCTTTTTTCCTTTCTCTTCGTTTTCTCTTCACTTCACTTTCTTTTTCCGCTGTCATGGAGTTGGACAAAGTGGGTTACTCCCTGGACGACACTTCTCTTTGGTTTCCTTCTGTTTTGGAAGCTTTGACGGTGGAGGCTCTTCTCACTGCTGCTAACTCTCTTGCTTGGTTTTTAACCACGGCAGGAGCTCTGTTAAATGATGTCAATGCTCCACCAGGATTCACTGCAATTGGGAAAAACTTTCCTTTTGAAGAACTTCATGCAAAGAATAATCCAGATCGAGAAAATGTAGATGGCAGTGAAACAGAGGATGATAAAGATGGGGATGAAGTTGATGATGATGATGCAAATGACCAGGATGGAGGGGAAGATGTTGAAGATTTCTCAGCCGAAGAAGGTGATGACGGAGATCTAGAAGATGACCCTGAAGCAAGTGGCAATGGAAGGGCCGGAGGAGATGAGGAGGATGATGGAGAAGATGACGATGACGATGCAAATGATCCAGATGAAGATGACGACGACGATGATGATGAAGATTTCTCCGCTGAAGAAGGGGATGAGGGTGATCAAGAGGATGACCCTGAAGCAAGTGGTAATGGAAGAATTGAAGGTGTTGAGGAGGAAGACGATGACGACGACGACGACGATGGAGATGAGGACGACGACGATGACGATGAAGAGGATGAAGATGACGAGGACGAAGATGATGACGAGGAAACACTCGAACCACCAGCTAAGAGAAGAAAGTGAAAATGTTGATTGCTTCTTTCCTTTTTCTGTTATCAGTGTTTCACTTCCCCTTTGTGTCTGGAGTTTGAAGTAACTAGTGAGGGGAACTTAGCCAGTCAGCCTTGGCATTTAGGGGTAGCAAGATTGTTGACCTTGTTATTAATGAACTTCCTAAAATTTATGTTGTGGATCCACATTATATATCACAATTTATTTTGCTAAAATGCACAAGGTTTTCTTCTACAATTTATTGGTTGGGACGGTTGGTTTCACCTGGTTGTTTGACAACTAACACTTCAACTCAGGACACCATAGGAGTTTTTCAATTTGAATGAATTGATTCAAATGACTAAATAAGAAAAAAATGTTGAATATCGGCAAGAGCCAG

Coding sequence (CDS)

ATGGAGTTGGACAAAGTGGGTTACTCCCTGGACGACACTTCTCTTTGGTTTCCTTCTGTTTTGGAAGCTTTGACGGTGGAGGCTCTTCTCACTGCTGCTAACTCTCTTGCTTGGTTTTTAACCACGGCAGGAGCTCTGTTAAATGATGTCAATGCTCCACCAGGATTCACTGCAATTGGGAAAAACTTTCCTTTTGAAGAACTTCATGCAAAGAATAATCCAGATCGAGAAAATGTAGATGGCAGTGAAACAGAGGATGATAAAGATGGGGATGAAGTTGATGATGATGATGCAAATGACCAGGATGGAGGGGAAGATGTTGAAGATTTCTCAGCCGAAGAAGGTGATGACGGAGATCTAGAAGATGACCCTGAAGCAAGTGGCAATGGAAGGGCCGGAGGAGATGAGGAGGATGATGGAGAAGATGACGATGACGATGCAAATGATCCAGATGAAGATGACGACGACGATGATGATGAAGATTTCTCCGCTGAAGAAGGGGATGAGGGTGATCAAGAGGATGACCCTGAAGCAAGTGGTAATGGAAGAATTGAAGGTGTTGAGGAGGAAGACGATGACGACGACGACGACGATGGAGATGAGGACGACGACGATGACGATGAAGAGGATGAAGATGACGAGGACGAAGATGATGACGAGGAAACACTCGAACCACCAGCTAAGAGAAGAAAGTGA

Protein sequence

MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIGKNFPFEELHAKNNPDRENVDGSETEDDKDGDEVDDDDANDQDGGEDVEDFSAEEGDDGDLEDDPEASGNGRAGGDEEDDGEDDDDDANDPDEDDDDDDDEDFSAEEGDEGDQEDDPEASGNGRIEGVEEEDDDDDDDDGDEDDDDDDEEDEDDEDEDDDEETLEPPAKRRK
BLAST of CsGy2G002260 vs. NCBI nr
Match: XP_004139283.1 (PREDICTED: prostatic spermine-binding protein [Cucumis sativus] >KGN60727.1 hypothetical protein Csa_2G008670 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60
          MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG
Sbjct: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60

Query: 61 KNFPFEELHAKNNPDRENVDGSET 85
          KNFPFEELHAKNNPDRENVDGSET
Sbjct: 61 KNFPFEELHAKNNPDRENVDGSET 84

BLAST of CsGy2G002260 vs. NCBI nr
Match: XP_008457280.1 (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 6.8e-38
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60
          MELDKVGYSLDD+SLWFPSVLEALTVE LLTAANSLAWFLTTAGALLNDVNAPPGFTAIG
Sbjct: 1  MELDKVGYSLDDSSLWFPSVLEALTVETLLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60

Query: 61 KNFPFEELHAKNNPDRENVDGSET 85
          KNFPF+ELHAKNNPDRENVDGSET
Sbjct: 61 KNFPFKELHAKNNPDRENVDGSET 84

BLAST of CsGy2G002260 vs. NCBI nr
Match: XP_022999302.1 (nucleolin-like [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60
          MEL+ VGY +DDTSLWF SVLEALTVE +LTAANSLAWFL TAGALLNDVNAPPGF AIG
Sbjct: 1  MELEGVGYCVDDTSLWFRSVLEALTVETVLTAANSLAWFLATAGALLNDVNAPPGFAAIG 60

Query: 61 KNFPFEELHAKNNPDRENVDG 82
          K FPFEELHAKNNPD+ENVDG
Sbjct: 61 KKFPFEELHAKNNPDKENVDG 81

BLAST of CsGy2G002260 vs. NCBI nr
Match: XP_023547167.1 (nucleolin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 4.7e-31
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60
          MEL+ VGY +DDTSLWF SVLEALTVE +LTAANSL+WFL TAGALLNDVNAPPGF AIG
Sbjct: 1  MELEGVGYCVDDTSLWFRSVLEALTVETVLTAANSLSWFLATAGALLNDVNAPPGFAAIG 60

Query: 61 KNFPFEELHAKNNPDRENVDG 82
          K FPFEELHAKNNPD+ENVDG
Sbjct: 61 KKFPFEELHAKNNPDKENVDG 81

BLAST of CsGy2G002260 vs. NCBI nr
Match: XP_022946157.1 (nucleolin-like [Cucurbita moschata])

HSP 1 Score: 141.4 bits (355), Expect = 4.0e-30
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60
          MEL+ VGY +DDT+LWF SVLEAL VE +LTAANSL+WFL TAGALLNDVNAPPGF AIG
Sbjct: 1  MELEGVGYCVDDTALWFRSVLEALAVETVLTAANSLSWFLATAGALLNDVNAPPGFAAIG 60

Query: 61 KNFPFEELHAKNNPDRENVDG 82
          K FPFEELHAKNNPD+ENVDG
Sbjct: 61 KKFPFEELHAKNNPDKENVDG 81

BLAST of CsGy2G002260 vs. TrEMBL
Match: tr|A0A0A0LJ21|A0A0A0LJ21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008670 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60
          MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG
Sbjct: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60

Query: 61 KNFPFEELHAKNNPDRENVDGSET 85
          KNFPFEELHAKNNPDRENVDGSET
Sbjct: 61 KNFPFEELHAKNNPDRENVDGSET 84

BLAST of CsGy2G002260 vs. TrEMBL
Match: tr|A0A1S3C4Q0|A0A1S3C4Q0_CUCME (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103497007 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.5e-38
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0

Query: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60
          MELDKVGYSLDD+SLWFPSVLEALTVE LLTAANSLAWFLTTAGALLNDVNAPPGFTAIG
Sbjct: 1  MELDKVGYSLDDSSLWFPSVLEALTVETLLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60

Query: 61 KNFPFEELHAKNNPDRENVDGSET 85
          KNFPF+ELHAKNNPDRENVDGSET
Sbjct: 61 KNFPFKELHAKNNPDRENVDGSET 84

BLAST of CsGy2G002260 vs. TrEMBL
Match: tr|A0A1S3C539|A0A1S3C539_CUCME (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496993 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.7e-10
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60
          MELD V  S  + ++W  SVLEA+ VE + T ANSLA  L  AGA+LN  N  PG  AI 
Sbjct: 1  MELDCV--SFVERTMWERSVLEAMAVETVFTTANSLACLLAVAGAMLNIANGTPGLAAIE 60

Query: 61 KNFPFEELHAKNNPDR 77
          + FPF ELH K  PD+
Sbjct: 61 ERFPFSELHKKERPDQ 74

BLAST of CsGy2G002260 vs. TrEMBL
Match: tr|A0A2P4K8J9|A0A2P4K8J9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_01712 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.7e-10
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 3  LDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIGKN 62
          ++ VG S  + ++W  SVLE++ VE +L A  SLA  +   G+LLND++  P  TA+   
Sbjct: 1  MEVVGLSSVENNMWVSSVLESMVVETVLAAGKSLACLIMVTGSLLNDISVSPKLTAMDGR 60

Query: 63 FPFEELHAKNNPDREN 79
          FPFEELH +  PD+EN
Sbjct: 61 FPFEELHKRQRPDQEN 76

BLAST of CsGy2G002260 vs. TrEMBL
Match: tr|W9SIV3|W9SIV3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015554 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 41/77 (53.25%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 12 DTSLWFP----SVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIGKNFPFEE 71
          +  L FP    SVLEA+ VE++L A NSLA  L T G+LLN VN     TAI   FPFEE
Sbjct: 2  EVGLCFPGEMRSVLEAMVVESVLAAGNSLALLLMTIGSLLNGVNVSSKLTAIDGRFPFEE 61

Query: 72 LHAKNNPDRENVDGSET 85
          LH    P +EN D SET
Sbjct: 62 LHKLKRPVQENKDFSET 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004139283.12.7e-39100.00PREDICTED: prostatic spermine-binding protein [Cucumis sativus] >KGN60727.1 hypo... [more]
XP_008457280.16.8e-3896.43PREDICTED: prostatic spermine-binding protein-like [Cucumis melo][more]
XP_022999302.12.1e-3186.42nucleolin-like [Cucurbita maxima][more]
XP_023547167.14.7e-3185.19nucleolin-like [Cucurbita pepo subsp. pepo][more]
XP_022946157.14.0e-3082.72nucleolin-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LJ21|A0A0A0LJ21_CUCSA1.8e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008670 PE=4 SV=1[more]
tr|A0A1S3C4Q0|A0A1S3C4Q0_CUCME4.5e-3896.43prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103497007 ... [more]
tr|A0A1S3C539|A0A1S3C539_CUCME6.7e-1052.63phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
tr|A0A2P4K8J9|A0A2P4K8J9_QUESU6.7e-1044.74Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_01712 PE=4 SV=1[more]
tr|W9SIV3|W9SIV3_9ROSA1.3e-0853.25Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015554 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G002260.1CsGy2G002260.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..175
NoneNo IPR availablePANTHERPTHR35711FAMILY NOT NAMEDcoord: 142..231
coord: 9..160