CsGy2G002240 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G002240
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 1484587 .. 1484793 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTAAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCCGCCTCAACCACCACCACTACCACCACCGACGCTACCTCTGCCGCTGGCTCCCTCCTTCATAACATCAACCGCAACAAAGATCAAGCCTCCAAAGCCCAGCGGCTTGGTATCTCCTCTTGA

mRNA sequence

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTAAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCCGCCTCAACCACCACCACTACCACCACCGACGCTACCTCTGCCGCTGGCTCCCTCCTTCATAACATCAACCGCAACAAAGATCAAGCCTCCAAAGCCCAGCGGCTTGGTATCTCCTCTTGA

Coding sequence (CDS)

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTAAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCCGCCTCAACCACCACCACTACCACCACCGACGCTACCTCTGCCGCTGGCTCCCTCCTTCATAACATCAACCGCAACAAAGATCAAGCCTCCAAAGCCCAGCGGCTTGGTATCTCCTCTTGA

Protein sequence

MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASKAQRLGISS

Homology

[Close]

BLAST of CsGy2G002240 vs. NCBI nr
Match: KGN60725.1 (hypothetical protein Csa_2G008650 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK 60
          MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK
Sbjct: 1  MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK 60

Query: 61 AQRLGISS 69
          AQRLGISS
Sbjct: 61 AQRLGISS 68

[Close]

BLAST of CsGy2G002240 vs. NCBI nr
Match: KGN60724.1 (hypothetical protein Csa_2G008400 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 34/68 (50.00%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK 60
          MLRRQP+ I+V+IEDKEEL                           LLHN++RNKD ASK
Sbjct: 1  MLRRQPTMIDVEIEDKEEL------------EQLRKRPAAASTYSSLLHNLSRNKDPASK 56

Query: 61 AQRLGISS 69
          AQRLGISS
Sbjct: 61 AQRLGISS 56

[Close]

BLAST of CsGy2G002240 vs. TrEMBL
Match: tr|A0A0A0LFB1|A0A0A0LFB1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK 60
          MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK
Sbjct: 1  MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK 60

Query: 61 AQRLGISS 69
          AQRLGISS
Sbjct: 61 AQRLGISS 68

[Close]

BLAST of CsGy2G002240 vs. TrEMBL
Match: tr|A0A0A0LI59|A0A0A0LI59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.5e-05
Identity = 34/68 (50.00%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK 60
          MLRRQP+ I+V+IEDKEEL                           LLHN++RNKD ASK
Sbjct: 1  MLRRQPTMIDVEIEDKEEL------------EQLRKRPAAASTYSSLLHNLSRNKDPASK 56

Query: 61 AQRLGISS 69
          AQRLGISS
Sbjct: 61 AQRLGISS 56

The following BLAST results are available for this feature:

BLAST of CsGy2G002240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60725.1	3.3e-09	100.00	hypothetical protein Csa_2G008650 [Cucumis sativus]	[more]
KGN60724.1	1.4e-04	50.00	hypothetical protein Csa_2G008400 [Cucumis sativus]	[more]

BLAST of CsGy2G002240 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G002240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G002240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFB1\|A0A0A0LFB1_CUCSA	2.2e-09	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1	[more]
tr\|A0A0A0LI59\|A0A0A0LI59_CUCSA	9.5e-05	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G002240.1	CsGy2G002240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..68

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G002240	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G002240	Cucumber (Gy14) v2	cgybcgybB050
CsGy2G002240	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G002240	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G002240	Cucurbita moschata (Rifu)	cgybcmoB142
CsGy2G002240	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G002240	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G002240	Cucurbita pepo (Zucchini)	cgybcpeB257
CsGy2G002240	Cucurbita pepo (Zucchini)	cgybcpeB262
CsGy2G002240	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G002240	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G002240	Melon (DHL92) v3.5.1	cgybmeB116
CsGy2G002240	Melon (DHL92) v3.6.1	cgybmedB113
CsGy2G002240	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G002240	Watermelon (Charleston Gray)	cgybwcgB094
CsGy2G002240	Watermelon (Charleston Gray)	cgybwcgB133
CsGy2G002240	Watermelon (97103) v1	cgybwmB122
CsGy2G002240	Watermelon (97103) v1	cgybwmB154
CsGy2G002240	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G002240	Silver-seed gourd	carcgybB0269
CsGy2G002240	Silver-seed gourd	carcgybB0573
CsGy2G002240	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G002240	Watermelon (97103) v2	cgybwmbB098
CsGy2G002240	Watermelon (97103) v2	cgybwmbB151
CsGy2G002240	Wax gourd	cgybwgoB133