CsGy2G002230 (gene) Cucumber (Gy14) v2

NameCsGy2G002230
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionphosphopantothenoylcysteine decarboxylase subunit VHS3-like
LocationChr2 : 1479435 .. 1482857 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGGACTGTGTAAGCTTCGTGGAGAGGACCATGTGGGTGCGCTCTGTTTTGGAAGCTATGGCGGTGGACACTGTTTTCACCACTGCAAACTCCCTTGCTTGCCTTCTGGCGGCGGTAAACCCTCATTTTCATCTTACTCTTTGATGGGGTTTCACTTTTTTCCCGGATTTTACTGATACTAGTCATCGTTCCTACTTCTTGAAGCTTAATTTTTTTTTTTTTTTTTGTTATTTGTGTTTTCTTGGACTTCTTTTTTCTTATTGTTCTCCGTAGTTGTTTGTTGCCTAAGAACAAGACAACGTTATTTCTTCTCAATTTTTTTTTTTTTTTACTTTCTTTTCTCTTCTTGTGTTCTTTAGTTGTTTATGTAGCTTTTGAAGGTTTGCCTTTTGTTATTTGTGGGTTTACCCTTGCTCGTTTGTTTACTTTTCTGGTTAAGTACTTCCTTGAGAAACAACGTGGTTTTTTTTTTTTTAATCTGAAACTGTTGTGGAATGAGCTGTATTTGAAGTGCGAGTGTTTGGTGTAGTGATAAATGTGGATGGAAGGATAATTTTCGTCCTGTCTTGTTGACTTATACCTCCCATTGTGACCACGAACTAGGTGTCTTTGTCAGGATTTTTCCATTCTGTATTTAGATTATACTTGATATTCAATGTGCAAATCCTTTTGCTTTTCTGTCCTGCATTTGTTGAATTGTGTAAATCCTGCTTCTTTAGGGATAGTTTGTTGTTTGACATGAGAATTTGAGTTTTTTGGAAGTTATATTTATCTGATTCTTATTGATGGGGAGTTGGCACGGAATGACTTTGCTATTGTGTCCTCTGGGCTTGCTTGAATAATGTATAATATTATTCATTTCATGCGGTTTCTTTTGATTAAGTTTTAACTATCCTTTGCACTTAGTGGTTGTTGGGAGTTCATTATCACTTAGTTACAATTTCTTATCTAATCAACTCATGTTTTCTAGTTTCTTTTTGGGCATTTTCCTTTCTGGCATTTGGAATTGTTTTCACTTTGTTAGAACTTATTGTCGAATCAATTCACACTTTCCAGTTTCATGTGGGTGTTTTCCTTTTTTGCACTTCGAATCAGGGATAGTTAAAATGAATGCTGTTATTTCGGTACTCATATGTTCTTCCTGTTCTAACACCCATCAAATTGATACGTTATAGAAAGGGAGCTTGAAAACGACATAGTTTCCATATATGTTTTTTCCCCTAAATTTCAAGCCATACACTTTTTTATTTTGTCCCAAAATTTTGGAAAGTCGTTATGCCAAAGCATGGTCTGATGAGACATATCTGGAAGTTTTCTTCATTTACTGTTTTAGTCATTTAGACAATCTGTAGCTGGATGCCATGTTTTCTTTTTAATCTGATGCTTGCTTTTGAAATTTGTCATTTAGTGTGCAGTTTCCTAACCTTGTTTTGGACAATTCTGACAATAAGTAACAGTTTTAGATTAATTGAATGCACTTAACATGATCTTGAGACTTCAATTCATCTTCCACCATGATTATGTTTTCTTCAGGCAGGAGCTATGTTAAATATTGCTAATGGTACACCAGGACTGGCAGCAATTGAGGAAAGGTAATACAATTTCAAGTCATTTATATATTTTTACTTTGATACTTTTAGGTTGGTTCTGAAATACTTGCCTCTTCTCCTTTCCAAGGTTTCCTTTCTCTGAACTTCACAAAAAGGAAAGCCCTGATCAGGAAAACAAAGATGGCAGTGAAACGGAGGATGATGAAGATGACGACGACGACGATGATGCGAATGATCAGGATGACGACGACGATGATGAAGATTTCTCTGGAGGTGAAGAAGGTGATGACGGTGATCCAGAGGATGATCCTGAAGCAAATGGTGATGGAAGAGCTGGAGGTGATGAGGAAGATGACGATGACGATGATGACAATGGAGATGACGATGATGAAGATGAGGATGAGGACGAAGATGAGGACGAAGAAGACGAAGAGGAGGAAACACCCCAGCCACCAGCCAAGAAGAGGAAGTGAGAATATCGATTGGCACTTCACATTGTTGAGTTTCGAGTAGCGAGGGAAGTTTAGCTAGTGTTAGCCTTTGCTTTAGGGGTAGGAACATTGTGGGCCTTGTTGGTAATGAACTTCTCATCTTATGTTTGTGATGTTGTGGATCCATATTATATATAACAATTTCTTCTGCTGAATTAGTTAGTAGTGCTATGTTGTCAGAAGCAGAGATTTTCTTGGCTTCAAGCAAAATTCCATTGAGGAAAGAATAGCAAAATTGTGATTTGAGGCCATGGGGTTAAACAAGTTGGTTAGTTAAAATCAATGTTGTTAAACTTATGTTTATTTTTCCAAAACTAGAAAATTGATATCCTTAAATATTTAACTGATCTCGTTCAATGCGTCTAATTACGTAGGTTCAATTTGTTTGTTAGCTTTAACAGAAAACATATGAAGGAAAAATTGCAATTTTTTCCCTCCTTTCTTTCTTTACCTTGGTTGTAGCAATTCATATTGCTGGGGATGTTTTCACAATTTTCTTGAAACTATAGTGATGAATATTTTTTGTCTTCTTTTCTATCTATCTATCCCGAACAGAAAGATAGGTGTTGAAAAATACGACTCCTGAACTTTTAGTAACAATTTGAAGTTCGTAACAATAGATTTTGTACTTTGAAATTTGTAACTCCAGTTGGGTAGCAATTTAGATCTTACGAAAACTTCCAATAGTTTCAACATTAAGGATGAGAATAATCATATTGGCTGCATTGATCTTAATACTTAGAAAGAAACATTTTGGTCTTTAATTTTTTTTTTTTAAAAAAAACTTGAATTAAATCATGTTAAACTAAACCTTTAATTTCAAAATTCAAAAAATGGGACAAATGGAGTGGGAGCCACATTAGTGATAGACAGCTGACAAGTTCCACTTTTTATTTTTGTTATCAATATGATATTTTTAAGACAATTAATATTATTATTTTGAGTTCACAAAGTCCTACATTATTAATTTGAGTTTGGGATGCAAAGAGGACATATTTGTCCCCACTCATAATTCATTTGGGACCTTAAAAAATCTACCAAATCAATACTTTAGTTATAAAAATCCACAAATGTAACATCAGTTTCTTTCTCTTTGTTATCATTTGATTTTTCCTGGTAAGGTTAGACTTTTGATAAAAGATCTCAAGGCAAATTACACAATAGATTCTTAAAATTTGATTTCATACTTGATCAGAGAGGGAGATGATAGTCAAAGAATAGGAAGACAAAAGAAGGTAAAGAAGAGGAAAAATAGAAGTCACCTTGCTATAAGAAATATTAGTAGCGTTCTAACTCAACAATACACAATCAATAAGAAACCTAACCGTCACATCATTTTTTATAGGTCAAGTAATAGTTTAACAGCTATTTATTGA

mRNA sequence

ATGGAGTTGGACTGTGTAAGCTTCGTGGAGAGGACCATGTGGGTGCGCTCTGTTTTGGAAGCTATGGCGGTGGACACTGTTTTCACCACTGCAAACTCCCTTGCTTGCCTTCTGGCGGCGGCAGGAGCTATGTTAAATATTGCTAATGGTACACCAGGACTGGCAGCAATTGAGGAAAGGTTTCCTTTCTCTGAACTTCACAAAAAGGAAAGCCCTGATCAGGAAAACAAAGATGGCAGTGAAACGGAGGATGATGAAGATGACGACGACGACGATGATGCGAATGATCAGGATGACGACGACGATGATGAAGATTTCTCTGGAGGTGAAGAAGGTGATGACGGTGATCCAGAGGATGATCCTGAAGCAAATGGTGATGGAAGAGCTGGAGGTGATGAGGAAGATGACGATGACGATGATGACAATGGAGATGACGATGATGAAGATGAGGATGAGGACGAAGATGAGGACGAAGAAGACGAAGAGGAGGAAACACCCCAGCCACCAGCCAAGAAGAGGAAGTCAAGTAATAGTTTAACAGCTATTTATTGA

Coding sequence (CDS)

ATGGAGTTGGACTGTGTAAGCTTCGTGGAGAGGACCATGTGGGTGCGCTCTGTTTTGGAAGCTATGGCGGTGGACACTGTTTTCACCACTGCAAACTCCCTTGCTTGCCTTCTGGCGGCGGCAGGAGCTATGTTAAATATTGCTAATGGTACACCAGGACTGGCAGCAATTGAGGAAAGGTTTCCTTTCTCTGAACTTCACAAAAAGGAAAGCCCTGATCAGGAAAACAAAGATGGCAGTGAAACGGAGGATGATGAAGATGACGACGACGACGATGATGCGAATGATCAGGATGACGACGACGATGATGAAGATTTCTCTGGAGGTGAAGAAGGTGATGACGGTGATCCAGAGGATGATCCTGAAGCAAATGGTGATGGAAGAGCTGGAGGTGATGAGGAAGATGACGATGACGATGATGACAATGGAGATGACGATGATGAAGATGAGGATGAGGACGAAGATGAGGACGAAGAAGACGAAGAGGAGGAAACACCCCAGCCACCAGCCAAGAAGAGGAAGTCAAGTAATAGTTTAACAGCTATTTATTGA

Protein sequence

MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEERFPFSELHKKESPDQENKDGSETEDDEDDDDDDDANDQDDDDDDEDFSGGEEGDDGDPEDDPEANGDGRAGGDEEDDDDDDDNGDDDDEDEDEDEDEDEEDEEEETPQPPAKKRKSSNSLTAIY
BLAST of CsGy2G002230 vs. NCBI nr
Match: XP_004139284.1 (PREDICTED: prostatic spermine-binding protein [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60
          MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER
Sbjct: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60

Query: 61 FPFSELHKKESPDQE 76
          FPFSELHKKESPDQE
Sbjct: 61 FPFSELHKKESPDQE 75

BLAST of CsGy2G002230 vs. NCBI nr
Match: XP_008457268.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 7.7e-29
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0

Query: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60
          MELDCVSFVERTMW RSVLEAMAV+TVFTTANSLACLLA AGAMLNIANGTPGLAAIEER
Sbjct: 1  MELDCVSFVERTMWERSVLEAMAVETVFTTANSLACLLAVAGAMLNIANGTPGLAAIEER 60

Query: 61 FPFSELHKKESPDQ 75
          FPFSELHKKE PDQ
Sbjct: 61 FPFSELHKKERPDQ 74

BLAST of CsGy2G002230 vs. NCBI nr
Match: XP_022946159.1 (mitotic apparatus protein p62-like [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60
          MEL+ V F+ERTMWV SVLEAM ++TVF TANSLACLLAA GA+LN AN TPGLAAIEER
Sbjct: 1  MELEGVGFMERTMWVSSVLEAMVMETVFVTANSLACLLAATGALLNNANATPGLAAIEER 60

Query: 61 FPFSELHKKESPDQE 76
          FPFSELHKKE PDQE
Sbjct: 61 FPFSELHKKERPDQE 75

BLAST of CsGy2G002230 vs. NCBI nr
Match: XP_023545361.1 (nucleolin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60
          MEL+ V F+ERTMWV SVLEAM ++TVF TANSLACLLAA GA+LN AN TPGLAAIEER
Sbjct: 1  MELEGVGFMERTMWVSSVLEAMVMETVFATANSLACLLAATGALLNNANATPGLAAIEER 60

Query: 61 FPFSELHKKESPDQE 76
          FPFSELHKKE PDQE
Sbjct: 61 FPFSELHKKERPDQE 75

BLAST of CsGy2G002230 vs. NCBI nr
Match: XP_022965978.1 (prostatic spermine-binding protein-like [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 8.3e-23
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60
          MEL  V FV+RTMWVRSVLEA+AV+TVFTTANSLACLLAAAGA+LN AN  PG AAIEE 
Sbjct: 1  MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61 FPFSELHKKESPDQE 76
          FPF+ELH+K+SPDQE
Sbjct: 61 FPFAELHRKKSPDQE 75

BLAST of CsGy2G002230 vs. TrEMBL
Match: tr|A0A1S3C539|A0A1S3C539_CUCME (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496993 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-29
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0

Query: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60
          MELDCVSFVERTMW RSVLEAMAV+TVFTTANSLACLLA AGAMLNIANGTPGLAAIEER
Sbjct: 1  MELDCVSFVERTMWERSVLEAMAVETVFTTANSLACLLAVAGAMLNIANGTPGLAAIEER 60

Query: 61 FPFSELHKKESPDQ 75
          FPFSELHKKE PDQ
Sbjct: 61 FPFSELHKKERPDQ 74

BLAST of CsGy2G002230 vs. TrEMBL
Match: tr|A0A2P4K8J9|A0A2P4K8J9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_01712 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-11
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60
          ME+  +S VE  MWV SVLE+M V+TV     SLACL+   G++LN  + +P L A++ R
Sbjct: 1  MEVVGLSSVENNMWVSSVLESMVVETVLAAGKSLACLIMVTGSLLNDISVSPKLTAMDGR 60

Query: 61 FPFSELHKKESPDQE 76
          FPF ELHK++ PDQE
Sbjct: 61 FPFEELHKRQRPDQE 75

BLAST of CsGy2G002230 vs. TrEMBL
Match: tr|A0A1S3C4Q0|A0A1S3C4Q0_CUCME (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103497007 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 1  MELDCV--SFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIE 60
          MELD V  S  + ++W  SVLEA+ V+T+ T ANSLA  L  AGA+LN  N  PG  AI 
Sbjct: 1  MELDKVGYSLDDSSLWFPSVLEALTVETLLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60

Query: 61 ERFPFSELHKKESPDQE 76
          + FPF ELH K +PD+E
Sbjct: 61 KNFPFKELHAKNNPDRE 77

BLAST of CsGy2G002230 vs. TrEMBL
Match: tr|A0A2C9VN08|A0A2C9VN08_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G044400 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.0e-10
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 1  MELDCVSFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIEER 60
          ME+  VS VERT+W  SV+EA+AV+TV     SLA L   AG++LN  NG+P L AI+ER
Sbjct: 1  MEVGGVSSVERTLWACSVMEAVAVETVHAAWKSLAYLFFVAGSLLNDINGSPKLTAIDER 60

Query: 61 FPFSELHKKESPDQE 76
          FP  EL K + PD E
Sbjct: 61 FPLHELFKMKLPDAE 75

BLAST of CsGy2G002230 vs. TrEMBL
Match: tr|A0A0A0LJ21|A0A0A0LJ21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008670 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 1  MELDCV--SFVERTMWVRSVLEAMAVDTVFTTANSLACLLAAAGAMLNIANGTPGLAAIE 60
          MELD V  S  + ++W  SVLEA+ V+ + T ANSLA  L  AGA+LN  N  PG  AI 
Sbjct: 1  MELDKVGYSLDDTSLWFPSVLEALTVEALLTAANSLAWFLTTAGALLNDVNAPPGFTAIG 60

Query: 61 ERFPFSELHKKESPDQE 76
          + FPF ELH K +PD+E
Sbjct: 61 KNFPFEELHAKNNPDRE 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004139284.11.3e-31100.00PREDICTED: prostatic spermine-binding protein [Cucumis sativus][more]
XP_008457268.17.7e-2994.59PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
XP_022946159.11.7e-2381.33mitotic apparatus protein p62-like [Cucurbita moschata][more]
XP_023545361.11.7e-2381.33nucleolin-like [Cucurbita pepo subsp. pepo][more]
XP_022965978.18.3e-2380.00prostatic spermine-binding protein-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3C539|A0A1S3C539_CUCME5.1e-2994.59phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
tr|A0A2P4K8J9|A0A2P4K8J9_QUESU4.8e-1152.00Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_01712 PE=4 SV=1[more]
tr|A0A1S3C4Q0|A0A1S3C4Q0_CUCME3.1e-1053.25prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103497007 ... [more]
tr|A0A2C9VN08|A0A2C9VN08_MANES7.0e-1054.67Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G044400 PE=4 SV=... [more]
tr|A0A0A0LJ21|A0A0A0LJ21_CUCSA1.2e-0951.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008670 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G002230.1CsGy2G002230.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..164
NoneNo IPR availablePANTHERPTHR35711FAMILY NOT NAMEDcoord: 2..174

The following gene(s) are paralogous to this gene:

None