CsGy2G000980 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G000980
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionninja-family protein mc410
LocationChr2 : 636115 .. 639914 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
cgaaaattattttagtaaaggaaaaaaatggaaaagaataaatccgaagaaaagtaagaggaacgggacaaagatggtcacgtgcctaaaagagagggacgagcgaaaagaaagaaaaagaaactgaaaaagagagaaaaaaaggatgaaaacatttctcacagttgcagattgcgaaatttccatggctgtttctctctgttcaagacgccatggctgaagctttagggtttccatttcaggtatttttatgttattttaccctccctcataagtttgcttgtagcgtgcactcttgtggtaggtgcgtctgatttggcatgtaaattttcatttattatcttcgaggatttcgagtactttcggaatatgtcacgattcttaatttgaattctgttactgttgttgctttggattctaaagttcttcttccgtctagattttctcctctgtgatattgggttttgatgtattttgtgattctgagttgtcttgatatctttgttagggagaattaagcgatattattattaaaaggaacttcatcaaattgatattttcgttgagcctatagatgttggaatttttggatttagtaaagataggtggagcaattctgcattatactctttgacatactctacaccaatttatttaggagactttgccgacctggtgatctggtttggtaggctataagaattgtaaggatcagtttagttacgatttcgtttttgttgtttgcttttgaaacttatgcttgtttcatcctgaattttcaattgtggctttcatctttgttgaagaaaaacttgaattcttagtcaaattttatgcagaaataagtttttcaaaactgctttttagttttcaaaatttggatcagttttttgaaaacgagaattgttgttgctaattgcgtttccagcagattaccttggttttctgttattggtattagggggtgcataatattgttgtggggaattatgtcaatgtgacctaaaaaagaagtgatagaccttgactttggattgcatgacgaggaacatgcaatgtttgttatgatgtacgtttgattgaactcttagattggagtttataatgatgacctaaattgttattgaaaagtctaaaaacacataaaagggtgctttgggggggaacttttatttgtgctcacttaagtcaccatttgcatagttcatcttaatctcactctaattgtttgtgttctgacttttaatttttaactttgtgttttgacctactgatatcatacgagctacagctgcggattgtttgaccgatacgcagtaactttataattaagtcgtcacacattagtagtctgttggttggaaattcttcatttacaattgttttctgttctctttttgttgactctttgttctcatttagtactgaggtagacttaaatttcatggaattaaatgctgttgctctacattgcaggtaattgtatattgtcattaactgcactagatgtcttgatgccgcacgggagatttattctatttaatatttcttccatcattatcggtgataaaattgaattctctgaggattatagatctattagcgtctagtgggcaatttttgtacatagactagggttgagtgtgtatgtctgttgttccgtccctacattcgctgccaaagccttacttactggacgtcatagtggattgatgtcaatgaacgtttagtttgaaaaatggagagtgaggatgggcttgagcttagcttgggtctgtcctgggtggagcttctgccaagtctaaaggtaaaattactagctcttcaggtgcaaatgctgaggaaagcgatagaggcaataaattggtggatgattttaagagttttcttcatggagataatcagaggcaagaatcagacactggatcattccaaagtaattcaattccatctaaagataatttcttcaatgacctgtccaaagttggtgtagatggagactcttccatcgatttgaagaggaaaggagcctggattgaaagtaattatgcagaagctgaggatgaaaatctgccggagatcggcaacaagcggaagttgcttttaatggaaatgaacagtcaaaagaagcaggaaagagaatctcatcatgtggatttacatgaaaagggaagggcatcattcatttcctctaccgaagatggttcaactgccgaaaaaggagatgtagtagagtctagagctgaaggttcgacatcaaggctagcatcaaaacatgatgatagctcgaaacaatgtataggagaaactagtttgactaagggttcaaaggatatctgtggattttctgattcaagtggtgcagacttaagtaggcagaaaaggtttaacaattcctcagttgGAGTTTCAGACGCTGTTCAAGCCATGAATATGCATAATGTGCCTTTTCCCATATCAGTCAAGGATACTAACAGTCTTGGTGCCCCAGCACATCTGGTCATTTGCAACTTGGAATTCAGCATGTGCGACCTACTGTAAAATGGTGACCGACCAGGGGCTGAACTCATAAACCCTCGAAATTTGCCTCTTATGGCTGGCATTTCACCACTTCAGATTTCAGCAATGGACAAAGATAAGTCATGGGGATTGGTTTCTCATCCACAAATGATCCATCATCCTATGGTGGTGGTGGTGGTCTTGGTGGTGTATCATCTAGCTCAGGTATAGACATGATTTTCGGATCAAAACAATACAGTTTCATTTGCATGTTATTGTTTCAACCGATCTAACAAATACATTATTATAAATAGATTTTACGATATGCTCATACGGTGTACACCGTACAAAACTTTCAGTTGGTTACTTATGCTGTCTGTATTTGTATGCATAGCTCCTGGGCAAGTAACTGGACCTTTTTCATCCGATGGTTTGTTGTATGGAGGGAGGGTGACCGAACTTACTAAAGGCGATAACAAGCAGCCTGCCATGGAAGAGGGATCCTCTTCTCGAGCGGACCATGCAAAAGGAGCAGTTCCAACATGAACGCAAAAGACGTATAGAACGGTCAAAAACAGCCAGTGTCTCCCTCGATTTTCCAGCTATAAAGCCAGGCATTGCTGCAGACATTGAATTTGGGGGATGTGGTTCATACCCAAACCTTCCTTGGGTTTCACCACTGCCCAGGCCCTACAGGTAAGACAATCTCTGGTGTGACATATAGATTTAATGCAAACCAGATCAAAATTGTTTGTGCTTGCCATGGCACTCACATGTCTCCTGAAGAGTTCATTCGACATGCCAACGACGAGAGTTTTAGTGCACAGAATGACAATGCTCCCCAACTATTCCAAATAAAAATCCTGCTGCCTCCGCACAAAGCTGATTTGATACCATCTACATTCTTTACGACCTCACTTTAAAACAGGATTCTTCTCTATAAGTTGTACATCTTTATCCTTGAATTCTAAGGATAGCGTTTACGATGTTTGCTTAGAATGAAAATGTCGGGAATCGAAGAAGGGCTAGTAGACAAGGTGGGTTTTGAAGGCACCTGATTGTAATTATTTACTCGTATGATAAGGTAAAGCTGATGGGGCTCAAGTATTTCTGATGTATTTATAATTTAATTATGTATTATAATTCTCATCCTTGAGTTAAATAGTCATATTGACTATTGAGTTGATTTTCACATCGCTAACTTCTAACAGTCTTTTTCTTGTCGATTAAAATCTATAATTCAAGCAAAGTATGTTGAACAAACTGTTTCTTTTTAATAAATATTTTAACAATAATTCAAG

mRNA sequence

CGAAAATTATTTTAGTAAAGGAAAAAAATGGAAAAGAATAAATCCGAAGAAAAGTAAGAGGAACGGGACAAAGATGGTCACGTGCCTAAAAGAGAGGGACGAGCGAAAAGAAAGAAAAAGAAACTGAAAAAGAGAGAAAAAAAGGATGAAAACATTTCTCACAGTTGCAGATTGCGAAATTTCCATGGCTGTTTCTCTCTGTTCAAGACGCCATGGCTGAAGCTTTAGGGTTTCCATTTCAGGTAATTGTATATTGTCATTAACTGCACTAGATGTCTTGATGCCGCACGGGAGATTTATTCTATTTAATATTTCTTCCATCATTATCGGTGATAAAATTGAATTCTCTGAGGATTATAGATCTATTAGCGTCTAGTGGGCAATTTTTGTACATAGACTAGGGTTGAGTGTGTATGTCTGTTGTTCCGTCCCTACATTCGCTGCCAAAGCCTTACTTACTGGACGTCATAGTGGATTGATGTCAATGAACGTTTAGTTTGAAAAATGGAGAGTGAGGATGGGCTTGAGCTTAGCTTGGGTCTGTCCTGGGTGGAGCTTCTGCCAAGTCTAAAGGTAAAATTACTAGCTCTTCAGGTGCAAATGCTGAGGAAAGCGATAGAGGCAATAAATTGGTGGATGATTTTAAGAGTTTTCTTCATGGAGATAATCAGAGGCAAGAATCAGACACTGGATCATTCCAAAGTAATTCAATTCCATCTAAAGATAATTTCTTCAATGACCTGTCCAAAGTTGGTGTAGATGGAGACTCTTCCATCGATTTGAAGAGGAAAGGAGCCTGGATTGAAAGTAATTATGCAGAAGCTGAGGATGAAAATCTGCCGGAGATCGGCAACAAGCGGAAGTTGCTTTTAATGGAAATGAACAGTCAAAAGAAGCAGGAAAGAGAATCTCATCATGTGGATTTACATGAAAAGGGAAGGGCATCATTCATTTCCTCTACCGAAGATGGTTCAACTGCCGAAAAAGGAGATGTAGTAGAGTCTAGAGCTGAAGGTTCGACATCAAGGCTAGCATCAAAACATGATGATAGCTCGAAACAATGTATAGGAGAAACTAGTTTGACTAAGGGTTCAAAGGATATCTGTGGATTTTCTGATTCAAGTGGTGCAGACTTAAGTAGGCAGAAAAGGTTTAACAATTCCTCAGTTGGAGTTTCAGACGCTGTTCAAGCCATGAATATGCATAATGTGCCTTTTCCCATATCAGTCAAGGATACTAACAGTCTTGGTGCCCCAGCACATCTGGTCATTTGCAACTTGGAATTCAGCATGTGCGACCTACTGTAAAATGGTGACCGACCAGGGGCTGAACTCATAAACCCTCGAAATTTGCCTCTTATGGCTGGCATTTCACCACTTCAGATTTCAGCAATGGACAAAGATAAGTCATGGGGATTGGTTTCTCATCCACAAATGATCCATCATCCTATGGTGGTGGTGGTGGTCTTGGTGGTGTATCATCTAGCTCAGCTCCTGGGCAAGTAACTGGACCTTTTTCATCCGATGGTTTGTTGTATGGAGGGAGGGTGACCGAACTTACTAAAGGCGATAACAAGCAGCCTGCCATGGAAGAGGGATCCTCTTCTCGAGCGGACCATGCAAAAGGAGCAGTTCCAACATGAACGCAAAAGACGTATAGAACGGTCAAAAACAGCCAGTGTCTCCCTCGATTTTCCAGCTATAAAGCCAGGCATTGCTGCAGACATTGAATTTGGGGGATGTGGTTCATACCCAAACCTTCCTTGGGTTTCACCACTGCCCAGGCCCTACAGGTAAGACAATCTCTGGTGTGACATATAGATTTAATGCAAACCAGATCAAAATTGTTTGTGCTTGCCATGGCACTCACATGTCTCCTGAAGAGTTCATTCGACATGCCAACGACGAGAGTTTTAGTGCACAGAATGACAATGCTCCCCAACTATTCCAAATAAAAATCCTGCTGCCTCCGCACAAAGCTGATTTGATACCATCTACATTCTTTACGACCTCACTTTAAAACAGGATTCTTCTCTATAAGTTGTACATCTTTATCCTTGAATTCTAAGGATAGCGTTTACGATGTTTGCTTAGAATGAAAATGTCGGGAATCGAAGAAGGGCTAGTAGACAAGGTGGGTTTTGAAGGCACCTGATTGTAATTATTTACTCGTATGATAAGGTAAAGCTGATGGGGCTCAAGTATTTCTGATGTATTTATAATTTAATTATGTATTATAATTCTCATCCTTGAGTTAAATAGTCATATTGACTATTGAGTTGATTTTCACATCGCTAACTTCTAACAGTCTTTTTCTTGTCGATTAAAATCTATAATTCAAGCAAAGTATGTTGAACAAACTGTTTCTTTTTAATAAATATTTTAACAATAATTCAAG

Coding sequence (CDS)

ATGGGGATTGGTTTCTCATCCACAAATGATCCATCATCCTATGGTGGTGGTGGTGGTCTTGGTGGTGTATCATCTAGCTCAGCTCCTGGGCAAGTAACTGGACCTTTTTCATCCGATGGTTTGTTGTATGGAGGGAGGGTGACCGAACTTACTAAAGGCGATAACAAGCAGCCTGCCATGGAAGAGGGATCCTCTTCTCGAGCGGACCATGCAAAAGGAGCAGTTCCAACATGA

Protein sequence

MGIGFSSTNDPSSYGGGGGLGGVSSSSAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKGAVPT
Homology
[Close]
BLAST of CsGy2G000980 vs. NCBI nr
Match: XP_004139437.1 (PREDICTED: ninja-family protein mc410 [Cucumis sativus] >KGN60598.1 hypothetical protein Csa_2G002530 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.9e-17
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0 

Query: 14  YGXXXXXXXXXXXSAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKG 73
           YG XXXX      SAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKG
Sbjct: 316 YGGXXXXGGVSSSSAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKG 375

Query: 74  A 75
           +
Sbjct: 376 S 376

[Close]
BLAST of CsGy2G000980 vs. NCBI nr
Match: XP_008458598.1 (PREDICTED: ninja-family protein mc410 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-16
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 27  SAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKGA 75
           SAPGQV GPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRA+HAKG+
Sbjct: 326 SAPGQVIGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRAEHAKGS 373

[Close]
BLAST of CsGy2G000980 vs. NCBI nr
Match: XP_023546193.1 (ninja-family protein mc410-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 27  SAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKGAVP 77
           SA  QV GPFSS+GLLYGGR TE TKGD+KQPAMEEGSSSRA+HAKG+ P
Sbjct: 327 SAAAQVIGPFSSEGLLYGGRATEHTKGDSKQPAMEEGSSSRAEHAKGSSP 376

[Close]
BLAST of CsGy2G000980 vs. NCBI nr
Match: XP_022946086.1 (ninja-family protein mc410 [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 8.1e-12
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 27  SAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKGAVP 77
           SA  QV GPFSS+GLLYGGR TE TKGD+KQPAM+EGSSS+A+HAKG+ P
Sbjct: 327 SAAAQVIGPFSSEGLLYGGRATEHTKGDSKQPAMDEGSSSQAEHAKGSSP 376

[Close]
BLAST of CsGy2G000980 vs. NCBI nr
Match: XP_022999479.1 (ninja-family protein mc410 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 27  SAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKGAVP 77
           SA  QV GPFSS+GLLYGGR TE TKG++KQPAMEEGSSSRA+HAKG+ P
Sbjct: 327 SAAVQVIGPFSSEGLLYGGRATEHTKGNSKQPAMEEGSSSRAEHAKGSSP 376

[Close]
BLAST of CsGy2G000980 vs. TrEMBL
Match: tr|A0A0A0LFU8|A0A0A0LFU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002530 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0 

Query: 14  YGXXXXXXXXXXXSAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKG 73
           YG XXXX      SAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKG
Sbjct: 316 YGGXXXXGGVSSSSAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKG 375

Query: 74  A 75
           +
Sbjct: 376 S 376

[Close]
BLAST of CsGy2G000980 vs. TrEMBL
Match: tr|A0A1S3C8B6|A0A1S3C8B6_CUCME (ninja-family protein mc410 OS=Cucumis melo OX=3656 GN=LOC103497953 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-16
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 27  SAPGQVTGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRADHAKGA 75
           SAPGQV GPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRA+HAKG+
Sbjct: 326 SAPGQVIGPFSSDGLLYGGRVTELTKGDNKQPAMEEGSSSRAEHAKGS 373

The following BLAST results are available for this feature:
BLAST of CsGy2G000980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139437.12.9e-1786.89PREDICTED: ninja-family protein mc410 [Cucumis sativus] >KGN60598.1 hypothetical... [more]
XP_008458598.15.4e-1693.75PREDICTED: ninja-family protein mc410 [Cucumis melo][more]
XP_023546193.11.2e-1280.00ninja-family protein mc410-like [Cucurbita pepo subsp. pepo][more]
XP_022946086.18.1e-1276.00ninja-family protein mc410 [Cucurbita moschata][more]
XP_022999479.11.1e-1178.00ninja-family protein mc410 [Cucurbita maxima][more]
BLAST of CsGy2G000980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G000980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G000980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LFU8|A0A0A0LFU8_CUCSA1.9e-1786.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002530 PE=4 SV=1[more]
tr|A0A1S3C8B6|A0A1S3C8B6_CUCME3.6e-1693.75ninja-family protein mc410 OS=Cucumis melo OX=3656 GN=LOC103497953 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G000980.1CsGy2G000980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G000980Cla016782Watermelon (97103) v1cgybwmB154
CsGy2G000980Csa2G002530Cucumber (Chinese Long) v2cgybcuB056
CsGy2G000980MELO3C004575Melon (DHL92) v3.5.1cgybmeB121
CsGy2G000980ClCG11G002290Watermelon (Charleston Gray)cgybwcgB094
CsGy2G000980CSPI02G00990Wild cucumber (PI 183967)cgybcpiB056
CsGy2G000980CmaCh05G013530Cucurbita maxima (Rimu)cgybcmaB257
CsGy2G000980CmoCh05G013630Cucurbita moschata (Rifu)cgybcmoB243
CsGy2G000980MELO3C004575.2Melon (DHL92) v3.6.1cgybmedB119
CsGy2G000980CsaV3_2G002070Cucumber (Chinese Long) v3cgybcucB064
CsGy2G000980Cla97C11G208700Watermelon (97103) v2cgybwmbB098
CsGy2G000980Bhi06G001707Wax gourdcgybwgoB127
CsGy2G000980Carg18588Silver-seed gourdcarcgybB0886
CsGy2G000980Carg10850Silver-seed gourdcarcgybB0573
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G000980Watermelon (97103) v2cgybwmbB143
CsGy2G000980Watermelon (97103) v2cgybwmbB150
CsGy2G000980Wax gourdcgybwgoB138
CsGy2G000980Wax gourdcgybwgoB205
CsGy2G000980Cucurbita pepo (Zucchini)cgybcpeB168
CsGy2G000980Cucurbita maxima (Rimu)cgybcmaB154
CsGy2G000980Cucurbita maxima (Rimu)cgybcmaB163
CsGy2G000980Cucurbita maxima (Rimu)cgybcmaB178
CsGy2G000980Cucurbita maxima (Rimu)cgybcmaB175
CsGy2G000980Cucurbita moschata (Rifu)cgybcmoB146
CsGy2G000980Cucurbita moschata (Rifu)cgybcmoB155
CsGy2G000980Cucurbita moschata (Rifu)cgybcmoB169
CsGy2G000980Cucurbita moschata (Rifu)cgybcmoB170
CsGy2G000980Cucurbita pepo (Zucchini)cgybcpeB204
CsGy2G000980Cucurbita pepo (Zucchini)cgybcpeB232
CsGy2G000980Cucurbita pepo (Zucchini)cgybcpeB269
CsGy2G000980Cucurbita pepo (Zucchini)cgybcpeB272
CsGy2G000980Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G000980Watermelon (97103) v1cgybwmB165
CsGy2G000980Silver-seed gourdcarcgybB0041
CsGy2G000980Silver-seed gourdcarcgybB0137