CsGy2G000960 (gene) Cucumber (Gy14) v2

NameCsGy2G000960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr2 : 628457 .. 629419 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACTTAGCTTCTAAATTTCTTTCACAAAGATATAAGTATGAAATTTAATAAGATATAAGTATGAAATTTAATACTATGTTCAACACTTTTCATTTATGAGTTTAGAAGAAAATTTTACAAGTAAAAATCAATTAATATTAAATGGAAAAAAATAGCAAACTAACACATACATGAAATCACACTTTTGATCATATCATATTAAGCATAACTTTGGTACTATTGGAAAACTGACTCAATTTATTGGAGTCCCTAATAAACTATTAAGAATTGTGTGGGATTCATAAATAAATATGTAATAAATAAAATATATTTTTAAAAACTAGTAAATTCTTTATTGACATGTCGTGTCAAATAATCTACATAATAGTAGTATCTACTACTGCAACGCTAAAATTTTTCATTAGGGCTACAAATAGCGACGTGGATAACCATATATGTATATATATTAAGAAGCTAACAACAAAAGCATAATCTATGTCTTACTATAAAATTACCCTAATTAAGTTTAAGAAGCTGATGAATTGAAGCTTTTCCTCGTGAGATTGATTCAAACATTTTGTTGATGATCATCATCACGAACAAAACTCTTCCAAAAAGGATGATTTTCCCAAAGAAGATAAATCTCTCAATAGGAACTTGCTTAGTTTCAGGCAAAAGAAAGTAGATGAAGCAACTCATGAGAAATATCAAAGCTGCAAAGAGAATGAAAATGCCATAGCGAAGATGACACATTGCGGCCAAAAAGCACTGAGCGATGAGGCCGTGAATAAGAGGTTTACGCAGACCACGATGCTTTGGCCGGCGGATCTTGTTTCTAATGGAAATAACTCGCTTGGAACTAACCATCCTAATGGACCCCATGACCGTCCGTACGCCAAAACGAATAGCCAAATTAAGCACACTAGCAATATGCTTACGCCTTTGATAGCTCCTTTCCTTGACCGAAGTTTAGTTTAG

mRNA sequence

ATGAAAAACTTAGCTTCTAAATTTCTTTCACAAAGATATAAGCAAAAGAAAGTAGATGAAGCAACTCATGAGAAATATCAAAGCTGCAAAGAGAATGAAAATGCCATAGCGAAGATGACACATTGCGGCCAAAAAGCACTGAGCGATGAGGCCGTGAATAAGAGGTTTACGCAGACCACGATGCTTTGGCCGGCGGATCTTGTTTCTAATGGAAATAACTCGCTTGGAACTAACCATCCTAATGGACCCCATGACCGTCCGTACGCCAAAACGAATAGCCAAATTAAGCACACTAGCAATATGCTTACGCCTTTGATAGCTCCTTTCCTTGACCGAAGTTTAGTTTAG

Coding sequence (CDS)

ATGAAAAACTTAGCTTCTAAATTTCTTTCACAAAGATATAAGCAAAAGAAAGTAGATGAAGCAACTCATGAGAAATATCAAAGCTGCAAAGAGAATGAAAATGCCATAGCGAAGATGACACATTGCGGCCAAAAAGCACTGAGCGATGAGGCCGTGAATAAGAGGTTTACGCAGACCACGATGCTTTGGCCGGCGGATCTTGTTTCTAATGGAAATAACTCGCTTGGAACTAACCATCCTAATGGACCCCATGACCGTCCGTACGCCAAAACGAATAGCCAAATTAAGCACACTAGCAATATGCTTACGCCTTTGATAGCTCCTTTCCTTGACCGAAGTTTAGTTTAG

Protein sequence

MKNLASKFLSQRYKQKKVDEATHEKYQSCKENENAIAKMTHCGQKALSDEAVNKRFTQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTSNMLTPLIAPFLDRSLV
BLAST of CsGy2G000960 vs. NCBI nr
Match: KVI11579.1 (hypothetical protein Ccrd_010009 [Cynara cardunculus var. scolymus])

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 41  HCGQKALSDEAVNKRFTQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTSN 100
           HC  K     AV    TQTT+L PADLVSNGN SLGT+HP+GPHD PY +T   I  T  
Sbjct: 135 HCATK-----AVKNMLTQTTILCPADLVSNGNISLGTSHPSGPHDLPYPRTKRLITTTRK 193

Query: 101 MLTP 105
           M  P
Sbjct: 195 MPIP 193

BLAST of CsGy2G000960 vs. NCBI nr
Match: AFK48177.1 (unknown [Medicago truncatula])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 57  TQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTSNMLTP 105
           TQTT+L  ADL+SNG +SLGTNHP GP D PYA TN +I  T N L P
Sbjct: 3   TQTTILCAADLISNGKSSLGTNHPRGPQDLPYANTNKKITITRNALMP 50

BLAST of CsGy2G000960 vs. NCBI nr
Match: BAT08086.1 (Os09g0416250 [Oryza sativa Japonica Group])

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-07
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 52  VNKRFTQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTS 100
           V KRFT T ML PADLVS+G  SLGT HP+GPHD P A TN QI  T+
Sbjct: 63  VKKRFTATVMLCPADLVSSGKISLGTVHPSGPHDHPNASTNRQITTTT 110

BLAST of CsGy2G000960 vs. TrEMBL
Match: tr|A0A103YM34|A0A103YM34_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_010009 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 41  HCGQKALSDEAVNKRFTQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTSN 100
           HC  K     AV    TQTT+L PADLVSNGN SLGT+HP+GPHD PY +T   I  T  
Sbjct: 135 HCATK-----AVKNMLTQTTILCPADLVSNGNISLGTSHPSGPHDLPYPRTKRLITTTRK 193

Query: 101 MLTP 105
           M  P
Sbjct: 195 MPIP 193

BLAST of CsGy2G000960 vs. TrEMBL
Match: tr|I3T6N5|I3T6N5_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 57  TQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTSNMLTP 105
           TQTT+L  ADL+SNG +SLGTNHP GP D PYA TN +I  T N L P
Sbjct: 3   TQTTILCAADLISNGKSSLGTNHPRGPQDLPYANTNKKITITRNALMP 50

BLAST of CsGy2G000960 vs. TrEMBL
Match: tr|A0A0P0XLR6|A0A0P0XLR6_ORYSJ (Os09g0416250 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0416250 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 52  VNKRFTQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTS 100
           V KRFT T ML PADLVS+G  SLGT HP+GPHD P A TN QI  T+
Sbjct: 63  VKKRFTATVMLCPADLVSSGKISLGTVHPSGPHDHPNASTNRQITTTT 110

BLAST of CsGy2G000960 vs. TrEMBL
Match: tr|A0A0A9HY81|A0A0A9HY81_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 52  VNKRFTQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTS 100
           V  RFT T ML PADLVS+G  SLGT HP+GPHD P A TN QI  T+
Sbjct: 4   VKSRFTATVMLCPADLVSSGKISLGTVHPSGPHDHPNASTNRQITTTT 51

BLAST of CsGy2G000960 vs. TrEMBL
Match: tr|M1BM75|M1BM75_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0

Query: 52  VNKRFTQTTMLWPADLVSNGNNSLGTNHPNGPHDRPYAKTNSQIKHTS 100
           V  +FT T +LWPADLVS G  SLGT HP GPH+ P A T  Q+K T+
Sbjct: 34  VKNKFTVTVILWPADLVSKGKISLGTVHPRGPHEYPNAATKRQMKTTT 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KVI11579.12.1e-0856.25hypothetical protein Ccrd_010009 [Cynara cardunculus var. scolymus][more]
AFK48177.11.8e-0764.58unknown [Medicago truncatula][more]
BAT08086.13.1e-0766.67Os09g0416250 [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A103YM34|A0A103YM34_CYNCS1.4e-0856.25Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_010... [more]
tr|I3T6N5|I3T6N5_MEDTR1.2e-0764.58Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1[more]
tr|A0A0P0XLR6|A0A0P0XLR6_ORYSJ2.0e-0766.67Os09g0416250 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0416250 PE... [more]
tr|A0A0A9HY81|A0A0A9HY81_ARUDO7.7e-0764.58Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
tr|M1BM75|M1BM75_SOLTU5.0e-0658.33Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G000960.1CsGy2G000960.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..91

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G000960Cucurbita pepo (Zucchini)cgybcpeB168
CsGy2G000960Cucurbita maxima (Rimu)cgybcmaB154
CsGy2G000960Cucurbita maxima (Rimu)cgybcmaB163
CsGy2G000960Cucurbita maxima (Rimu)cgybcmaB178
CsGy2G000960Cucurbita maxima (Rimu)cgybcmaB175
CsGy2G000960Cucurbita maxima (Rimu)cgybcmaB257
CsGy2G000960Cucurbita moschata (Rifu)cgybcmoB146
CsGy2G000960Cucurbita moschata (Rifu)cgybcmoB155
CsGy2G000960Cucurbita moschata (Rifu)cgybcmoB169
CsGy2G000960Cucurbita moschata (Rifu)cgybcmoB170
CsGy2G000960Cucurbita moschata (Rifu)cgybcmoB243
CsGy2G000960Cucurbita pepo (Zucchini)cgybcpeB204
CsGy2G000960Cucurbita pepo (Zucchini)cgybcpeB232
CsGy2G000960Cucurbita pepo (Zucchini)cgybcpeB269
CsGy2G000960Cucurbita pepo (Zucchini)cgybcpeB272
CsGy2G000960Cucumber (Chinese Long) v2cgybcuB056
CsGy2G000960Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G000960Melon (DHL92) v3.5.1cgybmeB121
CsGy2G000960Melon (DHL92) v3.6.1cgybmedB119
CsGy2G000960Watermelon (Charleston Gray)cgybwcgB094
CsGy2G000960Watermelon (97103) v1cgybwmB154
CsGy2G000960Watermelon (97103) v1cgybwmB165
CsGy2G000960Wild cucumber (PI 183967)cgybcpiB056
CsGy2G000960Silver-seed gourdcarcgybB0041
CsGy2G000960Silver-seed gourdcarcgybB0137
CsGy2G000960Silver-seed gourdcarcgybB0573
CsGy2G000960Silver-seed gourdcarcgybB0886
CsGy2G000960Cucumber (Chinese Long) v3cgybcucB064
CsGy2G000960Watermelon (97103) v2cgybwmbB098
CsGy2G000960Watermelon (97103) v2cgybwmbB143
CsGy2G000960Watermelon (97103) v2cgybwmbB150
CsGy2G000960Wax gourdcgybwgoB127
CsGy2G000960Wax gourdcgybwgoB138
CsGy2G000960Wax gourdcgybwgoB205