CsGy2G000950 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G000950
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionCRS2-associated factor 1, chloroplastic
LocationChr2 : 627315 .. 627842 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGAAAGCAATTTTGTGTCATATGATGAGGAAGCTACAGGGTTGGATGACCAAAAATTGCACACAGCTACCACATCTGAGGATTTGGATTCATGGAGCACAATATCTGGAGGCGAGAGTGAGATAGAGTCGGGATACGAATTCTCCGACTCCGACTTTGACGAAGCAGAACCAATGGAACAATTGGAATTCGATTCCATTGCAGCTACAGGGAACTCAGAAACTAACGGATTGTATACTTCAGAAGGCTCACAAGCTCTCACCAAACCAACAAGCAACGCCACTGATGGTGTTCTTCAATTGTTGAAGCAAGCGGTCGAAAATGGCAGTGCCGTTGTATTAGACAGCTCTTCGTTGGATGCCGATGTCATTTATCAACAATCAGTTGCCTTCTCTCAGTCCGCCCCTCCATCACCCGTTTTTAAGCATGAACGAAGGAAGAAGGTAGCTGCTGATAAGAGCGAGGAGGAAACAAGCAGAGAGTTGGAAGTGAAAGAAGAAGAGACTGCAGTTTCTATGGAGTAG

mRNA sequence

ATGCATGAAAGCAATTTTGTGTCATATGATGAGGAAGCTACAGGGTTGGATGACCAAAAATTGCACACAGCTACCACATCTGAGGATTTGGATTCATGGAGCACAATATCTGGAGGCGAGAGTGAGATAGAGTCGGGATACGAATTCTCCGACTCCGACTTTGACGAAGCAGAACCAATGGAACAATTGGAATTCGATTCCATTGCAGCTACAGGGAACTCAGAAACTAACGGATTGTATACTTCAGAAGGCTCACAAGCTCTCACCAAACCAACAAGCAACGCCACTGATGGTGTTCTTCAATTGTTGAAGCAAGCGGTCGAAAATGGCAGTGCCGTTGTATTAGACAGCTCTTCGTTGGATGCCGATGTCATTTATCAACAATCAGTTGCCTTCTCTCAGTCCGCCCCTCCATCACCCGTTTTTAAGCATGAACGAAGGAAGAAGGTAGCTGCTGATAAGAGCGAGGAGGAAACAAGCAGAGAGTTGGAAGTGAAAGAAGAAGAGACTGCAGTTTCTATGGAGTAG

Coding sequence (CDS)

ATGCATGAAAGCAATTTTGTGTCATATGATGAGGAAGCTACAGGGTTGGATGACCAAAAATTGCACACAGCTACCACATCTGAGGATTTGGATTCATGGAGCACAATATCTGGAGGCGAGAGTGAGATAGAGTCGGGATACGAATTCTCCGACTCCGACTTTGACGAAGCAGAACCAATGGAACAATTGGAATTCGATTCCATTGCAGCTACAGGGAACTCAGAAACTAACGGATTGTATACTTCAGAAGGCTCACAAGCTCTCACCAAACCAACAAGCAACGCCACTGATGGTGTTCTTCAATTGTTGAAGCAAGCGGTCGAAAATGGCAGTGCCGTTGTATTAGACAGCTCTTCGTTGGATGCCGATGTCATTTATCAACAATCAGTTGCCTTCTCTCAGTCCGCCCCTCCATCACCCGTTTTTAAGCATGAACGAAGGAAGAAGGTAGCTGCTGATAAGAGCGAGGAGGAAACAAGCAGAGAGTTGGAAGTGAAAGAAGAAGAGACTGCAGTTTCTATGGAGTAG

Protein sequence

MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPMEQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSLDADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEVKEEETAVSME
Homology
[Close]
BLAST of CsGy2G000950 vs. NCBI nr
Match: XP_004139352.1 (PREDICTED: CRS2-associated factor 1, chloroplastic [Cucumis sativus] >KGN60595.1 hypothetical protein Csa_2G002010 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 9.2e-80
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPM 60
           MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPM
Sbjct: 532 MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPM 591

Query: 61  EQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSL 120
           EQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSL
Sbjct: 592 EQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSL 651

Query: 121 DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEV 166
           DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEV
Sbjct: 652 DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEV 696

[Close]
BLAST of CsGy2G000950 vs. NCBI nr
Match: XP_008458627.1 (PREDICTED: CRS2-associated factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 1.9e-64
Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 0 

Query: 1   MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPM 60
           MHE N VSYD E+T  DDQ LH +TTSEDLDSWST+SGGESEIESGYE+  SDFDEAEPM
Sbjct: 533 MHEINSVSYDMESTASDDQTLHISTTSEDLDSWSTMSGGESEIESGYEY--SDFDEAEPM 592

Query: 61  EQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSL 120
           E  EFDSIAATGNSETN +YTSEGSQAL KPTSNATDGVLQLLKQAVENGSAVVLDSSSL
Sbjct: 593 EPSEFDSIAATGNSETNVVYTSEGSQALNKPTSNATDGVLQLLKQAVENGSAVVLDSSSL 652

Query: 121 DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSR 162
           DADV+YQ+SVAFSQSAPPSPVFKHERRKKVAADKS+EETSR
Sbjct: 653 DADVVYQRSVAFSQSAPPSPVFKHERRKKVAADKSKEETSR 691

[Close]
BLAST of CsGy2G000950 vs. NCBI nr
Match: XP_022999431.1 (CRS2-associated factor 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 2.5e-45
Identity = 115/177 (64.97%), Postives = 142/177 (80.23%), Query Frame = 0 

Query: 1   MHESNFVSY--DEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAE 60
           M +SN ++   D EATG D Q+++T +T +D +SWST+SGGE+E +SG+E  +SDFDEAE
Sbjct: 539 MRKSNSLANADDMEATGSDVQEMNTDSTCDDSESWSTMSGGETETDSGHE--NSDFDEAE 598

Query: 61  PMEQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSS 120
           PMEQ  F++IAA GN ET    TSE +QAL KP S A DGVLQLLKQAVENG A+VLD S
Sbjct: 599 PMEQSRFNAIAAAGNLETKVGGTSEATQALNKPASYAMDGVLQLLKQAVENGGALVLDDS 658

Query: 121 SLDADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEVKEEETAVSME 176
           SLDADVIY+++VAFSQSAPP PVF+H+ +KKVA DK  E+TSRELEVK EE+AVS+E
Sbjct: 659 SLDADVIYRRAVAFSQSAPPEPVFRHQPKKKVAVDKGPEQTSRELEVK-EESAVSVE 712

[Close]
BLAST of CsGy2G000950 vs. NCBI nr
Match: XP_023522663.1 (CRS2-associated factor 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 110/177 (62.15%), Postives = 139/177 (78.53%), Query Frame = 0 

Query: 1   MHESNFV--SYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAE 60
           MH+SN +  + D EATG D Q+++T  T +D +S S +SGGE+E +SG+E+  SDFDEAE
Sbjct: 190 MHKSNSLADADDMEATGSDVQEMNTDNTCDDSESSSAMSGGETETDSGHEY--SDFDEAE 249

Query: 61  PMEQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSS 120
           PMEQ   ++IAA GN ET    TSE +QAL KP S   DGVLQLLKQA+ENG A+VLD S
Sbjct: 250 PMEQSRLNAIAAAGNLETKVGGTSEATQALNKPASYTMDGVLQLLKQAIENGGALVLDDS 309

Query: 121 SLDADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEVKEEETAVSME 176
           SLDADV+Y+++VAFSQSAPP+PVF+H+ RKKVA DK EE+TSRELE  +EE+AVS+E
Sbjct: 310 SLDADVVYRRAVAFSQSAPPAPVFRHQPRKKVAVDKGEEQTSRELEEVKEESAVSVE 364

[Close]
BLAST of CsGy2G000950 vs. NCBI nr
Match: XP_023547205.1 (CRS2-associated factor 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023547206.1 CRS2-associated factor 1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 110/177 (62.15%), Postives = 139/177 (78.53%), Query Frame = 0 

Query: 1   MHESNFV--SYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAE 60
           MH+SN +  + D EATG D Q+++T  T +D +S S +SGGE+E +SG+E+  SDFDEAE
Sbjct: 539 MHKSNSLADADDMEATGSDVQEMNTDNTCDDSESSSAMSGGETETDSGHEY--SDFDEAE 598

Query: 61  PMEQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSS 120
           PMEQ   ++IAA GN ET    TSE +QAL KP S   DGVLQLLKQA+ENG A+VLD S
Sbjct: 599 PMEQSRLNAIAAAGNLETKVGGTSEATQALNKPASYTMDGVLQLLKQAIENGGALVLDDS 658

Query: 121 SLDADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEVKEEETAVSME 176
           SLDADV+Y+++VAFSQSAPP+PVF+H+ RKKVA DK EE+TSRELE  +EE+AVS+E
Sbjct: 659 SLDADVVYRRAVAFSQSAPPAPVFRHQPRKKVAVDKGEEQTSRELEEVKEESAVSVE 713

[Close]
BLAST of CsGy2G000950 vs. TAIR10
Match: AT2G20020.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-08
Identity = 51/150 (34.00%), Postives = 72/150 (48.00%), Query Frame = 0 

Query: 26  TSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPMEQLEFDSIAATGNSETNGLYTSEGS 85
           T   L SWST    E  ++S     +   DE E  E++   SI                 
Sbjct: 520 TINSLQSWSTKDVTEPTVDSFLRDLEEPEDEPETSEEISKQSI----------------- 579

Query: 86  QALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSLDADVIYQQSVAFSQSAPPSPVFKHE 145
                      + VL L+KQAVE+G+A+VLD++ LDAD ++ ++VAFS  A P PVF+H 
Sbjct: 580 -----------ERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSSVASPGPVFQHG 639

Query: 146 RRKK--VAADKSEEETSRELEVKEEETAVS 174
            RK+  V   +S+E    +LE K     VS
Sbjct: 640 LRKQPTVKKQESQEFGYGDLEAKSSNVVVS 641

[Close]
BLAST of CsGy2G000950 vs. Swiss-Prot
Match: sp|Q9SL79|CAF1P_ARATH (CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g20020 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 51/150 (34.00%), Postives = 72/150 (48.00%), Query Frame = 0 

Query: 26  TSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPMEQLEFDSIAATGNSETNGLYTSEGS 85
           T   L SWST    E  ++S     +   DE E  E++   SI                 
Sbjct: 520 TINSLQSWSTKDVTEPTVDSFLRDLEEPEDEPETSEEISKQSI----------------- 579

Query: 86  QALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSLDADVIYQQSVAFSQSAPPSPVFKHE 145
                      + VL L+KQAVE+G+A+VLD++ LDAD ++ ++VAFS  A P PVF+H 
Sbjct: 580 -----------ERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSSVASPGPVFQHG 639

Query: 146 RRKK--VAADKSEEETSRELEVKEEETAVS 174
            RK+  V   +S+E    +LE K     VS
Sbjct: 640 LRKQPTVKKQESQEFGYGDLEAKSSNVVVS 641

[Close]
BLAST of CsGy2G000950 vs. Swiss-Prot
Match: sp|Q84N49|CAF1P_MAIZE (CRS2-associated factor 1, chloroplastic OS=Zea mays OX=4577 GN=CAF1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04
Identity = 26/61 (42.62%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 92  TSNATDGVLQLLKQAVENGSAVVLDSSSL-DADVIYQQSVAFSQSAPPSPVFKHERRKKV 151
           + +  +G+L LL+QA+ +G A+VL    L D+D++Y++SVAF++S P   VF++ RRK  
Sbjct: 548 SGSKVEGLLCLLEQAIHSGRALVLSEDELADSDLVYEKSVAFTKSIPRRLVFENTRRKSS 607

[Close]
BLAST of CsGy2G000950 vs. Swiss-Prot
Match: sp|Q5VMQ5|CAF1P_ORYSJ (CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0495900 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.6e-04
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 97  DGVLQLLKQAVENGSAVVLDSSSL-DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKS 156
           +G+L L KQA+++G A+VL+ +   DA+ +YQ+SVAF+++AP   V +H  RK     K+
Sbjct: 580 EGILLLFKQAIDSGMALVLNENEFADANYVYQKSVAFTKTAPRYLVLRHTPRKSHGTQKT 639

Query: 157 EEETSRELEVKEEETAVS 174
           E   +  +    EE  VS
Sbjct: 640 EPAKNVRINKHLEEHKVS 657

[Close]
BLAST of CsGy2G000950 vs. TrEMBL
Match: tr|A0A0A0LEZ8|A0A0A0LEZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002010 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 6.1e-80
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPM 60
           MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPM
Sbjct: 532 MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPM 591

Query: 61  EQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSL 120
           EQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSL
Sbjct: 592 EQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSL 651

Query: 121 DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEV 166
           DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEV
Sbjct: 652 DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEV 696

[Close]
BLAST of CsGy2G000950 vs. TrEMBL
Match: tr|A0A1S3C8A5|A0A1S3C8A5_CUCME (CRS2-associated factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497971 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-64
Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 0 

Query: 1   MHESNFVSYDEEATGLDDQKLHTATTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPM 60
           MHE N VSYD E+T  DDQ LH +TTSEDLDSWST+SGGESEIESGYE+  SDFDEAEPM
Sbjct: 533 MHEINSVSYDMESTASDDQTLHISTTSEDLDSWSTMSGGESEIESGYEY--SDFDEAEPM 592

Query: 61  EQLEFDSIAATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSL 120
           E  EFDSIAATGNSETN +YTSEGSQAL KPTSNATDGVLQLLKQAVENGSAVVLDSSSL
Sbjct: 593 EPSEFDSIAATGNSETNVVYTSEGSQALNKPTSNATDGVLQLLKQAVENGSAVVLDSSSL 652

Query: 121 DADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSR 162
           DADV+YQ+SVAFSQSAPPSPVFKHERRKKVAADKS+EETSR
Sbjct: 653 DADVVYQRSVAFSQSAPPSPVFKHERRKKVAADKSKEETSR 691

[Close]
BLAST of CsGy2G000950 vs. TrEMBL
Match: tr|A0A1U8ACM8|A0A1U8ACM8_NELNU (CRS2-associated factor 1, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104601533 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 49/105 (46.67%), Postives = 72/105 (68.57%), Query Frame = 0 

Query: 66  DSIAATGNSETNGLYTSEGSQALTK---PTSNATDGVLQLLKQAVENGSAVVLDSSSLDA 125
           D   A    +T      EGS+ L++   PT+N TDGV+ LL QA+ENGSAV+LDS+SLDA
Sbjct: 601 DDSEAVSMGKTTLENLQEGSECLSELESPTTNCTDGVILLLNQAIENGSAVILDSASLDA 660

Query: 126 DVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEVKE 168
           D+IY++S+A +++AP  P+FKH R +KV   K +++ +   EV+E
Sbjct: 661 DIIYERSIALAKTAPRGPIFKH-RPRKVFVQKGDKQETGNSEVEE 704

[Close]
BLAST of CsGy2G000950 vs. TrEMBL
Match: tr|A0A061GUC1|A0A061GUC1_THECC (RNA-binding CRS1 / YhbY domain-containing protein, putative OS=Theobroma cacao OX=3641 GN=TCM_037817 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = 0 

Query: 56  EAEPMEQLEFDSI--AATGNSETNGLYTSEGSQALTKPTSNATDGVLQLLKQAVENGSAV 115
           E+  M+ L  D +   A  + + NG           + T+  T+ VL  +KQAVE+GSAV
Sbjct: 618 ESSVMDSLNLDQLEDVAQASQDING---------PARKTAPCTERVLLFMKQAVESGSAV 677

Query: 116 VLDSSSLDADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSRELEVKE 168
           VLD ++LDAD+IY+++VAF++SAPP PVF+H+ R KVA  K+ ++    LEVKE
Sbjct: 678 VLDDATLDADIIYERAVAFARSAPPGPVFRHQPR-KVAVQKNGKQEPANLEVKE 721

[Close]
BLAST of CsGy2G000950 vs. TrEMBL
Match: tr|A0A0K9QYW4|A0A0K9QYW4_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_130640 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 58/144 (40.28%), Postives = 79/144 (54.86%), Query Frame = 0 

Query: 25  TTSEDLDSWSTISGGESEIESGYEFSDSDFDEAEPMEQLEFDSIAATGNSETNGLYTSEG 84
           + S DL S   I  G   ++      D++  EA   +     S       ET G+  +  
Sbjct: 570 SNSNDL-SGDVIDSGAGSLDEETRIVDTEDGEAAHSDVFINTSPGYAVLKETQGVSETSA 629

Query: 85  SQALTKPTSNATDGVLQLLKQAVENGSAVVLDSSSLDADVIYQQSVAFSQSAPPSPVFKH 144
           +      +S  T+GVL LL+QAVE+G AV+LD SSLDAD++Y++SVAF++ APP P+F H
Sbjct: 630 NGHSALSSSPCTEGVLYLLRQAVESGRAVILDESSLDADMVYERSVAFAREAPPGPIFTH 689

Query: 145 ERRKKVAADKSEEETSRELEVKEE 169
             R KVA  KSE   S E E  EE
Sbjct: 690 GPR-KVAVQKSENPESGESEADEE 711

The following BLAST results are available for this feature:
BLAST of CsGy2G000950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139352.19.2e-80100.00PREDICTED: CRS2-associated factor 1, chloroplastic [Cucumis sativus] >KGN60595.1... [more]
XP_008458627.11.9e-6486.96PREDICTED: CRS2-associated factor 1, chloroplastic [Cucumis melo][more]
XP_022999431.12.5e-4564.97CRS2-associated factor 1, chloroplastic isoform X1 [Cucurbita maxima][more]
XP_023522663.11.1e-4362.15CRS2-associated factor 1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_023547205.11.1e-4362.15CRS2-associated factor 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] ... [more]
BLAST of CsGy2G000950 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20020.11.0e-0834.00RNA-binding CRS1 / YhbY (CRM) domain-containing protein[more]
BLAST of CsGy2G000950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SL79|CAF1P_ARATH1.9e-0734.00CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g2... [more]
sp|Q84N49|CAF1P_MAIZE2.5e-0442.62CRS2-associated factor 1, chloroplastic OS=Zea mays OX=4577 GN=CAF1 PE=1 SV=1[more]
sp|Q5VMQ5|CAF1P_ORYSJ9.6e-0438.46CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947... [more]
BLAST of CsGy2G000950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEZ8|A0A0A0LEZ8_CUCSA6.1e-80100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002010 PE=4 SV=1[more]
tr|A0A1S3C8A5|A0A1S3C8A5_CUCME1.2e-6486.96CRS2-associated factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497971 ... [more]
tr|A0A1U8ACM8|A0A1U8ACM8_NELNU1.1e-1246.67CRS2-associated factor 1, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104601... [more]
tr|A0A061GUC1|A0A061GUC1_THECC6.0e-1143.86RNA-binding CRS1 / YhbY domain-containing protein, putative OS=Theobroma cacao O... [more]
tr|A0A0K9QYW4|A0A0K9QYW4_SPIOL1.0e-1040.28Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_130640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000373 Group II intron splicing
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G000950.1CsGy2G000950.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..175
NoneNo IPR availablePANTHERPTHR31846:SF8CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTICcoord: 58..173
NoneNo IPR availablePANTHERPTHR31846FAMILY NOT NAMEDcoord: 58..173

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G000950Cucurbita pepo (Zucchini)cgybcpeB168
CsGy2G000950Cucurbita maxima (Rimu)cgybcmaB154
CsGy2G000950Cucurbita maxima (Rimu)cgybcmaB163
CsGy2G000950Cucurbita maxima (Rimu)cgybcmaB178
CsGy2G000950Cucurbita maxima (Rimu)cgybcmaB175
CsGy2G000950Cucurbita maxima (Rimu)cgybcmaB257
CsGy2G000950Cucurbita moschata (Rifu)cgybcmoB146
CsGy2G000950Cucurbita moschata (Rifu)cgybcmoB155
CsGy2G000950Cucurbita moschata (Rifu)cgybcmoB169
CsGy2G000950Cucurbita moschata (Rifu)cgybcmoB170
CsGy2G000950Cucurbita moschata (Rifu)cgybcmoB243
CsGy2G000950Cucurbita pepo (Zucchini)cgybcpeB204
CsGy2G000950Cucurbita pepo (Zucchini)cgybcpeB232
CsGy2G000950Cucurbita pepo (Zucchini)cgybcpeB269
CsGy2G000950Cucurbita pepo (Zucchini)cgybcpeB272
CsGy2G000950Cucumber (Chinese Long) v2cgybcuB056
CsGy2G000950Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G000950Melon (DHL92) v3.5.1cgybmeB121
CsGy2G000950Melon (DHL92) v3.6.1cgybmedB119
CsGy2G000950Watermelon (Charleston Gray)cgybwcgB094
CsGy2G000950Watermelon (97103) v1cgybwmB154
CsGy2G000950Watermelon (97103) v1cgybwmB165
CsGy2G000950Wild cucumber (PI 183967)cgybcpiB056
CsGy2G000950Silver-seed gourdcarcgybB0041
CsGy2G000950Silver-seed gourdcarcgybB0137
CsGy2G000950Silver-seed gourdcarcgybB0573
CsGy2G000950Silver-seed gourdcarcgybB0886
CsGy2G000950Cucumber (Chinese Long) v3cgybcucB064
CsGy2G000950Watermelon (97103) v2cgybwmbB098
CsGy2G000950Watermelon (97103) v2cgybwmbB143
CsGy2G000950Watermelon (97103) v2cgybwmbB150
CsGy2G000950Wax gourdcgybwgoB127
CsGy2G000950Wax gourdcgybwgoB138
CsGy2G000950Wax gourdcgybwgoB205