CsGy2G000930 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G000930
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionCRS2-associated factor 1, chloroplastic
LocationChr2 : 624319 .. 626661 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCAACCCTACAAAAAATTGGAAATGGAAAAAGAAGTAATCAGGCGACGTCGTTTTGGCTTGCTGACAATGGTTTGGATATCCGGATGCCGGGAAACGTAATTGAGCTTCAGCACCGCGCTCTCACCTTCCATGGCGCTCAAATTGCCATTCCCTTCCCCATTTCACTCCTCAATTTAACCCTAATTCAACTCCCTCGCACCGTTACTCTTACCGAAATCCGATTCTCCCGTTGGTACAATGCAAACGCCGAAAATTCGAGCAGCGCCGACGGTCTCAGCAAGAAATCGAGGACGAAATCCGCCGCGAACGCCGCTTCAGTTCCGCCGCTAAAATCGTCGACCTCTGCGATTCCGACTCGCCCTCTTCCGCCATCGACCGCAATGAAACGTTCAGGTCCGTCGGCACTCCATCATCTCCATCAAGACCTTCAATCCCTGGTCGAAAATCCAAGTATTCCAAAAACCCTAATCCTGATTCACCATCTCCATTTCGTCAAGTTTCGAAGACCAAAAAGACCATGAACGCACCTGAAGAAAGACATATTGGCGTAGAAGCTAATGTTAGCCTAAGTGAAGATGGAGTTTCGTACGTAATTGATGGAGCTCCATTTGAGTTCAAGTATAGCTACACAGAAACGCCGAAGGTGAAGCCAATAAAGCTACGTGAACCGTATGCACCGTTTGGGCCGACTACAATGTCGCGGCCGTGGACAGGGCGTGCACCATTGCCACCGAGCAAAAAGAAATTGCCGGAATTCGACTCGTTTCAGCTGCCGCCGAAAAATAAGAAAGGTGTTAAACCAGTTCAGCGCCTGGACCATTCTTAGCAGGTTCTGGACCAAAGTATGTGATGTCGAGGAAGAAATATTGGGTGAGCCATTAACAAAGGAGGAGATCAAGGCGCTGATTCGTGGATGCATCAATTCCAATAGGCAATTGAATATTGGTATTCTTACTCCCCAATTTTTTTACTTAGCGATTTCTGTTTTGCCTGGACTTTCTAGCTATCTCTGTCATCATTTTTCAGAACTCCATTGTTGGTCATGACTGAAAAATGCAACTACAGAGTATTTAGATTACTGTAGAAGAAAAGTAGCTTCTCCTTTGTCTACCTTCAAACTTATTTACTTGCGGGGTTGATTTTTAGTGGGTTCCTGTAGTTGATTTCAAATTGGAGAAGAAAGATTTTATGAATGGTTTGAGTTGTTTGTTAAAATTTTGGTTTCAATCTTATTGGAAAACTTGAATTTTATACTATTCGTCCTTTCCATCTGAAATACAGTATTAGTTGAACTCAAAAAGTACAGATTAGATCATTAGAATAAGCTATAAATGGAGAAATTTATCTTCTCTGCACTTCAGCGTATGATAGAATGAACTTACTGAACTTTTTACTTTTGAATTGCTTTTAGGTAGAGATGGTTAACGCACAATATGTTGAGAACATACATGCTCTTTGGAAACGACGTAGAGTGTGCAAGATAAAATGCAAAGGAGTGTGTACGGTGACATGGACAATGTGAAACAGCAATTGGAGGTTGATGTCTCTTTATACACAGCACGACGTATTACTACTAATTACCTTTGTTATGCGTCCTTACCAGTACAAATATAAATTAATCTAAATAAATATTTTAGGCTTATAATTCGTGTTTGTTTCAACTTTACCTTCATAGTTTCTTGTGGTGCTTGTAAGTCTTTGTGGATTACAATGGCCATGTCTTTGGTTTTGCCAGTGCCCAGTTTGTCATTGTCTTGCTTCTTTTTATGTTAAGAGTTAGAGCATAAACCTCCTAGTTCCTATCTTGTATCACTTCTTTGTTCCCTTGAGAAATATGCTTTTAGCAAATTTTGATTGTTGCTTCTAATTATGTTCTAGTAACAAAATAATTAGCTATTATTTCTATTGGAAATGTATATGGCATGTGATATAGTTGTTTTGTTGGTTCCTTGACATTAATTCATAAGTTGTGTGGACATCTTCAACTATAATCACCACATGATCAAATAACCTCATTATTGATTCTTATTCTTCTGTGTTCTCACATGATTCTAAATCTCTGAACAATCCACATTGACCCTGCAGCCTATGCATTCAGTTGATTATAAAAAGTAAAATGTAGCGTCGATCTATGATTCATACTCATCTTCTTGTGACATACTTTGGCAGAAAGAACCGGGGTAAAATCATCTACAGTAGGGGTGGGCATTGTACCTTTATCGAGGTAGAAATTACAACTATAAAACCCGTCCTCGCTTCCCTCTCATGCTATGGAAACCTGCTGCACCAGTGTATCCTCGTCTAGTCAAGCACATCCCTGATGCCTTACACTGGAGGAAG

mRNA sequence

GCTCAACCCTACAAAAAATTGGAAATGGAAAAAGAAGTAATCAGGCGACGTCGTTTTGGCTTGCTGACAATGGTTTGGATATCCGGATGCCGGGAAACGTAATTGAGCTTCAGCACCGCGCTCTCACCTTCCATGGCGCTCAAATTGCCATTCCCTTCCCCATTTCACTCCTCAATTTAACCCTAATTCAACTCCCTCGCACCGTTACTCTTACCGAAATCCGATTCTCCCGTTGGTACAATGCAAACGCCGAAAATTCGAGCAGCGCCGACGGTCTCAGCAAGAAATCGAGGACGAAATCCGCCGCGAACGCCGCTTCAGTTCCGCCGCTAAAATCGTCGACCTCTGCGATTCCGACTCGCCCTCTTCCGCCATCGACCGCAATGAAACGTTCAGGTCCGTCGGCACTCCATCATCTCCATCAAGACCTTCAATCCCTGGTCGAAAATCCAATTTCGAAGACCAAAAAGACCATGAACGCACCTGAAGAAAGACATATTGGCGTAGAAGCTAATGTTAGCCTAAGTGAAGATGGAGTTTCGTACGTAATTGATGGAGCTCCATTTGAGTTCAAGTATAGCTACACAGAAACGCCGAAGGTGAAGCCAATAAAGCTACGTGAACCGTATGCACCGTTTGGGCCGACTACAATGTCGCGGCCGTGGACAGGGCGTGCACCATTGCCACCGAGCAAAAAGAAATTGCCGGAATTCGACTCGTTTCAGCTGCCGCCGAAAAATAAGAAAGGTTTCAGCGCCTGGACCATTCTTAGCAGGTTCTGGACCAAAGTATGTGATGTCGAGGAAGAAATATTGGGTGAGCCATTAACAAAGGAGGAGATCAAGGCGCTGATTCGTGGATGCATCAATTCCAATAGGCAATTGAATATTGGTATTCTTACTCCCCAATTTTTTTACTTAGCGATTTCTGTAGAGATGGTTAACGCACAATATGTTGAGAACATACATGCTCTTTGGAAACGACGTAGAGTGTGCAAGATAAAATGCAAAGGAGTGTGTACGGGGTGGGCATTGTACCTTTATCGAGGTAGAAATTACAACTATAAAACCCGTCCTCGCTTCCCTCTCATGCTATGGAAACCTGCTGCACCAGTGTATCCTCGTCTAGTCAAGCACATCCCTGATGCCTTACACTGGAGGAAG

Coding sequence (CDS)

ATGCCGGGAAACGTAATTGAGCTTCAGCACCGCGCTCTCACCTTCCATGGCGCTCAAATTGCCATTCCCTTCCCCATTTCACTCCTCAATTTAACCCTAATTCAACTCCCTCGCACCGTTACTCTTACCGAAATCCGATTCTCCCGTTGGTACAATGCAAACGCCGAAAATTCGAGCAGCGCCGACGGTCTCAGCAAGAAATCGAGGACGAAATCCGCCGCGAACGCCGCTTCAGTTCCGCCGCTAAAATCGTCGACCTCTGCGATTCCGACTCGCCCTCTTCCGCCATCGACCGCAATGAAACGTTCAGGTCCGTCGGCACTCCATCATCTCCATCAAGACCTTCAATCCCTGGTCGAAAATCCAATTTCGAAGACCAAAAAGACCATGAACGCACCTGAAGAAAGACATATTGGCGTAGAAGCTAATGTTAGCCTAAGTGAAGATGGAGTTTCGTACGTAATTGATGGAGCTCCATTTGAGTTCAAGTATAGCTACACAGAAACGCCGAAGGTGAAGCCAATAAAGCTACGTGAACCGTATGCACCGTTTGGGCCGACTACAATGTCGCGGCCGTGGACAGGGCGTGCACCATTGCCACCGAGCAAAAAGAAATTGCCGGAATTCGACTCGTTTCAGCTGCCGCCGAAAAATAAGAAAGGTTTCAGCGCCTGGACCATTCTTAGCAGGTTCTGGACCAAAGTATGTGATGTCGAGGAAGAAATATTGGGTGAGCCATTAACAAAGGAGGAGATCAAGGCGCTGATTCGTGGATGCATCAATTCCAATAGGCAATTGAATATTGGTATTCTTACTCCCCAATTTTTTTACTTAGCGATTTCTGTAGAGATGGTTAACGCACAATATGTTGAGAACATACATGCTCTTTGGAAACGACGTAGAGTGTGCAAGATAAAATGCAAAGGAGTGTGTACGGGGTGGGCATTGTACCTTTATCGAGGTAGAAATTACAACTATAAAACCCGTCCTCGCTTCCCTCTCATGCTATGGAAACCTGCTGCACCAGTGTATCCTCGTCTAGTCAAGCACATCCCTGATGCCTTACACTGGAGGAAG

Protein sequence

MPGNVIELQHRALTFHGAQIAIPFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAENSSSADGLSKKSRTKSAANAASVPPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVENPISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGFSAWTILSRFWTKVCDVEEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWKRRRVCKIKCKGVCTGWALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPDALHWRK
Homology
[Close]
BLAST of CsGy2G000930 vs. NCBI nr
Match: XP_004139352.1 (PREDICTED: CRS2-associated factor 1, chloroplastic [Cucumis sativus] >KGN60595.1 hypothetical protein Csa_2G002010 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 3.2e-103
Identity = 225/379 (59.37%), Postives = 239/379 (63.06%), Query Frame = 0 

Query: 19  QIAIPFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAE--------NSSSADGLSKKSRT 78
           ++  PFPI          P   TLTEIRFSRWYNANAE             D + ++ R 
Sbjct: 4   KLPFPFPIFTPQFNPNSTPSHRTLTEIRFSRWYNANAEKFEQRRRSQQEIEDEIRRERRF 63

Query: 79  KSAANAASVPPLKSSTSAIPTRPL-----PPSTAMKRSGPSALHHLHQDLQSLVENP--- 138
            SAA    +    S +SAI           P                        +P   
Sbjct: 64  SSAAKIVDLCDSDSPSSAIDRNETFRSVGTPXXXXXXXXXXXXXXXXXXXXXXXXSPFRQ 123

Query: 139 ISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA 198
           +SKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA
Sbjct: 124 VSKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA 183

Query: 199 PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCDV 258
           PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKG     +    L+    K    
Sbjct: 184 PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGVKPVQAPGPFLAGSGPKYVMS 243

Query: 259 EEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWK 318
            EEILGEPLTKEEIKALIRGCINSNRQLNIG             + +    +ENIHALWK
Sbjct: 244 REEILGEPLTKEEIKALIRGCINSNRQLNIG------------RDGLTHNMLENIHALWK 303

Query: 319 RRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLML 356
           RRRVCKIKCKGVCT                      G ALYLYRGRNYNYKTRPRFPLML
Sbjct: 304 RRRVCKIKCKGVCTVDMDNVKQQLEERTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLML 363

[Close]
BLAST of CsGy2G000930 vs. NCBI nr
Match: XP_008458627.1 (PREDICTED: CRS2-associated factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 359.4 bits (921), Expect = 1.4e-95
Identity = 213/380 (56.05%), Postives = 231/380 (60.79%), Query Frame = 0 

Query: 19  QIAIPFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAE--------NSSSADGLSKKSRT 78
           ++  PFPI          P   TLTEIRFSRW NANAE             D + ++ R 
Sbjct: 4   KLPFPFPIFTPQFNPNSTPSHRTLTEIRFSRWNNANAEKFEQRRRSQQEIEDEIRRERRF 63

Query: 79  KSAANAASVPPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVE--------NP 138
            SA N   +    S +SAI       S                                 
Sbjct: 64  SSATNIVDLCDSDSPSSAIDRTETFRSVGTXXXXXXXXXXXXXXXXXXXXXXXXXSPFRQ 123

Query: 139 ISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLRE-PY 198
           +SKTKKTMNAP+ERHIGVEANVSLSEDGVS+VIDGAPFEFKYSYTETPK+KPIKLRE PY
Sbjct: 124 VSKTKKTMNAPKERHIGVEANVSLSEDGVSFVIDGAPFEFKYSYTETPKLKPIKLREPPY 183

Query: 199 APFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCD 258
           APFGPTTM RPWTGRAPLPPSKKKLPEFDSFQLPPKNKKG     +    L+    K   
Sbjct: 184 APFGPTTMPRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGVKPVQAPGPFLAGSGPKYVM 243

Query: 259 VEEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALW 318
             EEILGEPLT+EEIK LIRGCI SNRQLNIG             + +    +ENIHA W
Sbjct: 244 SREEILGEPLTEEEIKMLIRGCIKSNRQLNIG------------RDGLTHNMLENIHAHW 303

Query: 319 KRRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLM 356
           KRRRVCKIKCKGVCT                      G ALYLYRGRNYNYKTRPRFPLM
Sbjct: 304 KRRRVCKIKCKGVCTVDMDNVKQQLEEKTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLM 363

[Close]
BLAST of CsGy2G000930 vs. NCBI nr
Match: XP_023547205.1 (CRS2-associated factor 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023547206.1 CRS2-associated factor 1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.4 bits (908), Expect = 4.6e-94
Identity = 209/379 (55.15%), Postives = 232/379 (61.21%), Query Frame = 0 

Query: 19  QIAIPFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAE--------NSSSADGLSKKSRT 78
           +++ PFPI     +    P   TLTEIRFSRW NANAE             D + ++ R 
Sbjct: 4   KLSFPFPIFSPQFSPNSTPSHRTLTEIRFSRWNNANAEKFEQRRRSQQEIEDEIRRERRF 63

Query: 79  KSAANAASVPPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVENP-------- 138
            SAA    +    SSTSAI       S                       NP        
Sbjct: 64  DSAARITDLCDSNSSTSAIDRTETFRSVGTPSXXXXXXXXXXXXXXXKNPNPGSPPPFRQ 123

Query: 139 ISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA 198
           +SKTKKTM+AP+E  IGV+A VSLSEDGVSYVIDGAPFEFKYSYTETPK+KPIKLREPYA
Sbjct: 124 VSKTKKTMSAPKEMPIGVKAKVSLSEDGVSYVIDGAPFEFKYSYTETPKLKPIKLREPYA 183

Query: 199 PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCDV 258
           PFGPTTM RPWTGRAPLPPS+K LPEFDSFQLPPKNKKG     +    L+    K    
Sbjct: 184 PFGPTTMPRPWTGRAPLPPSQKNLPEFDSFQLPPKNKKGVKTVQAPGPFLAGSGPKYVMS 243

Query: 259 EEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWK 318
            EEILGEPLT+EEIK LIRGCI SNRQLNIG             + +    ++NIHA WK
Sbjct: 244 REEILGEPLTEEEIKTLIRGCIKSNRQLNIG------------RDGLTHNMLDNIHAHWK 303

Query: 319 RRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLML 356
           RRRVCKIKCKGVCT                      G ALYLYRGRNYNYKTRPRFPLML
Sbjct: 304 RRRVCKIKCKGVCTVDMDNVKQQLEEKTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLML 363

[Close]
BLAST of CsGy2G000930 vs. NCBI nr
Match: XP_022946780.1 (CRS2-associated factor 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 350.5 bits (898), Expect = 6.7e-93
Identity = 208/379 (54.88%), Postives = 229/379 (60.42%), Query Frame = 0 

Query: 19  QIAIPFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAE--------NSSSADGLSKKSRT 78
           +++ PFPI               LTEIRFSRW NANAE             D + ++ R 
Sbjct: 4   KLSFPFPIFSPQXXXXXXXSHRPLTEIRFSRWNNANAEKFEQRRRSQQEIEDEIRRERRF 63

Query: 79  KSAANAASVPPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVENP-------- 138
            SAA    +    SSTSAI       S                       NP        
Sbjct: 64  DSAARITDLCDSNSSTSAIDRTETFRSVGTPSXXXXXXXXXXXXXXXKNPNPGSPPPFRQ 123

Query: 139 ISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA 198
           +SKTKKTM+AP+E  IGVEA VSLSEDGVSYVIDGAPFEFKYSYTETPK+KPIKLREPYA
Sbjct: 124 VSKTKKTMSAPKEMPIGVEAKVSLSEDGVSYVIDGAPFEFKYSYTETPKLKPIKLREPYA 183

Query: 199 PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCDV 258
           PFGPTTM RPWTGRAPLPPS+K LPEFDSFQLPPKNKKG     +    L+    K    
Sbjct: 184 PFGPTTMPRPWTGRAPLPPSQKNLPEFDSFQLPPKNKKGVKTVQAPGPFLAGSGPKYVMS 243

Query: 259 EEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWK 318
            EEILGEPLT+EEIK LIRGCI SNRQLNIG             + +    ++NIHA WK
Sbjct: 244 REEILGEPLTEEEIKTLIRGCIKSNRQLNIG------------RDGLTHNMLDNIHAHWK 303

Query: 319 RRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLML 356
           RRRVCKIKCKGVCT                      G ALYLYRGRNYNYKTRPRFPLML
Sbjct: 304 RRRVCKIKCKGVCTVDMDNVKQQLEEKTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLML 363

[Close]
BLAST of CsGy2G000930 vs. NCBI nr
Match: XP_022999431.1 (CRS2-associated factor 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 348.6 bits (893), Expect = 2.5e-92
Identity = 207/379 (54.62%), Postives = 229/379 (60.42%), Query Frame = 0 

Query: 19  QIAIPFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAE--------NSSSADGLSKKSRT 78
           +++ PFPI          P    LT+IRFSRW NANAE             D + ++ R 
Sbjct: 4   KLSFPFPIFSPQXXXXXXPSHRPLTDIRFSRWNNANAEKFEQRRRSQQEIEDEIRRERRF 63

Query: 79  KSAANAASVPPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVENP-------- 138
            SAA    +    SSTSAI       S                       NP        
Sbjct: 64  DSAARITDLCDSNSSTSAIDRTETFRSVGTPSXXXXXXXXXXXXXXXKNPNPGSPPPFRQ 123

Query: 139 ISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA 198
           +SKTKKTM+AP+E  IGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPK+KPIKLREPYA
Sbjct: 124 VSKTKKTMSAPKEMPIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKLKPIKLREPYA 183

Query: 199 PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCDV 258
           PFGPTTM RPW GRAPLPPS+K LPEFDSFQLPPKNKKG     +    L+    K    
Sbjct: 184 PFGPTTMPRPWMGRAPLPPSQKNLPEFDSFQLPPKNKKGVKTVQAPGPFLAGSGPKYVMS 243

Query: 259 EEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWK 318
            EEILGEPLT+EEIK LIRG I SNRQLNIG             + +    ++NIHA WK
Sbjct: 244 REEILGEPLTEEEIKTLIRGSIKSNRQLNIG------------RDGLTHNMLDNIHAHWK 303

Query: 319 RRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLML 356
           RRRVCKIKCKGVCT                      G ALYLYRGRNYNYKTRPRFPLML
Sbjct: 304 RRRVCKIKCKGVCTVDMDNVKQQLEEKTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLML 363

[Close]
BLAST of CsGy2G000930 vs. TAIR10
Match: AT2G20020.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 268.1 bits (684), Expect = 7.9e-72
Identity = 171/381 (44.88%), Postives = 211/381 (55.38%), Query Frame = 0 

Query: 23  PFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAENSSSA-----------------DGLS 82
           PFPI   +L     PR    +EIRFSRW NANAE                      D  +
Sbjct: 8   PFPIFAPSLFPNHNPRAP--SEIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRFDAAT 67

Query: 83  KKSRTKSAANAASVP---PLKS-STSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVEN 142
           K   T  +  AA+ P   P +S  T ++P+    P    K S P           S    
Sbjct: 68  KIVHTHDSEAAAAEPKTSPFRSRGTPSLPSARSIPGRRSKYSKP----------DSGPNR 127

Query: 143 PISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREP- 202
           P +K +   + P+   +  +  V LSEDG++YVI+GAPFEFKYSYTETPKVKP+KLREP 
Sbjct: 128 PKNKPRVPDSPPQ---LDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPA 187

Query: 203 YAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGFSAWTILSRF----WTKVC 262
           YAPFGPTTM RPWTGRAPLP S+K   EFDSF+LPP  KKG         F      +  
Sbjct: 188 YAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRYV 247

Query: 263 DVEEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHAL 322
             +EEILGEPLTKEE++ L+  C+ + RQLN+G             + +    + NIH L
Sbjct: 248 YSKEEILGEPLTKEEVRELVTSCLKTTRQLNMG------------RDGLTHNMLNNIHDL 307

Query: 323 WKRRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPL 356
           WKRRRVCKIKCKGVCT                      G  L+L+RGRNYN++TRPRFPL
Sbjct: 308 WKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPL 361

[Close]
BLAST of CsGy2G000930 vs. TAIR10
Match: AT1G23400.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 204.9 bits (520), Expect = 8.2e-53
Identity = 124/317 (39.12%), Postives = 171/317 (53.94%), Query Frame = 0 

Query: 78  SVPPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVENPISKTKKTMNAPEER- 137
           S PP+  S+S    RP PP    K +  +   +   + Q+       ++   +  P  R 
Sbjct: 18  STPPMADSSSG-TFRPAPPIPIPKYAPSNRNRNQKTNHQTDTNPKKPQSNPALKLPHHRT 77

Query: 138 ------HIGV-----EANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREP-YAPF 197
                   GV     +  + + + GVSY + GAPFEF++SY+ETPKVKP+ +REP + PF
Sbjct: 78  RYYKPVKEGVISSDGDRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPVGIREPAFMPF 137

Query: 198 GPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGFSAWTILSRF----WTKVCDVEE 257
            P TM RPWTG+APL  SKKK+P FDSF  PP  K G     +        + K     E
Sbjct: 138 APPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNRE 197

Query: 258 EILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWKRR 317
           E+LGEPL + E   LI+  ++ NRQ+N+G             +      +E IH+ WKRR
Sbjct: 198 EVLGEPLKRWEKGMLIKPHMHDNRQVNLG------------RDGFTHNMLELIHSHWKRR 257

Query: 318 RVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLMLWK 356
           RVCK++CKGV T                      G  +YL+RGRNYNY+TRP++PLMLWK
Sbjct: 258 RVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWK 317

[Close]
BLAST of CsGy2G000930 vs. TAIR10
Match: AT5G54890.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 119.8 bits (299), Expect = 3.5e-27
Identity = 82/233 (35.19%), Postives = 113/233 (48.50%), Query Frame = 0 

Query: 154 VIDGAPFEFKYSYTET-PKVKPIKLREP--YAPFGPTTMSRPWTGRAPLPPSKKKLPEFD 213
           VI   PF+F+YSY+ET P+++PI  REP  ++PFGP  + R WTG   L       PE D
Sbjct: 73  VISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALAS-----PEID 132

Query: 214 SFQLPPKNKKGFSAWTILSRFWTKVCDVEEEILGEPLTKEEIKALIRGCINSN--RQLNI 273
             Q                  W    +    +LGE LT++E+  LI    +S+  RQ+N+
Sbjct: 133 QSQ------------------WV---EERARVLGETLTEDEVTELIERYRHSDCTRQINL 192

Query: 274 GILTPQFFYLAISVEMVNAQYVENIHALWKRRRVCKIKCKGVCT---------------G 333
           G               V    +++IH  WK+    +IKC GV T               G
Sbjct: 193 G------------KGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGG 252

Query: 334 WALY-------LYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPDALHWRK 360
             +Y       LYRGRNY+ K+RP  PLMLWKP  P+YPRLVK++ D L + +
Sbjct: 253 KIVYRNINILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEE 267

[Close]
BLAST of CsGy2G000930 vs. TAIR10
Match: AT4G31010.1 (RNA-binding CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-25
Identity = 80/235 (34.04%), Postives = 108/235 (45.96%), Query Frame = 0 

Query: 147 SEDGVSYVIDGAPFEFKYSYTET-PKVKPIKLREP-YAPFGPTTMSRPWTGRAPLPPSKK 206
           S +GV  V    PF+F++SYTE+   V+PI LREP Y+PFGP  + R WTG    P    
Sbjct: 72  SLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTG-VCAPAVNP 131

Query: 207 KLPEFDSFQLPPKNKKGFSAWTILSRFWTKVCDVEEEILGEPLTKEEIKALIRGC--INS 266
           K+   D  + P   +K                 V E+I G  LT+ E K L+  C    +
Sbjct: 132 KVESVDGVEDPKLEEKRRK--------------VREKIQGASLTEAERKFLVELCQRNKT 191

Query: 267 NRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWKRRRVCKIKCKGVCT---------- 326
            RQ+N+G             + +    + +++  WK     ++KC GV T          
Sbjct: 192 KRQVNLG------------RDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHL 251

Query: 327 ------------GWALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPDAL 356
                          L LYRGRNY+ K RP+ PLMLWKP  PVYPRL+K   D L
Sbjct: 252 EDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGL 279

[Close]
BLAST of CsGy2G000930 vs. Swiss-Prot
Match: sp|Q9SL79|CAF1P_ARATH (CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g20020 PE=2 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 1.4e-70
Identity = 171/381 (44.88%), Postives = 211/381 (55.38%), Query Frame = 0 

Query: 23  PFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAENSSSA-----------------DGLS 82
           PFPI   +L     PR    +EIRFSRW NANAE                      D  +
Sbjct: 8   PFPIFAPSLFPNHNPRAP--SEIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRFDAAT 67

Query: 83  KKSRTKSAANAASVP---PLKS-STSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVEN 142
           K   T  +  AA+ P   P +S  T ++P+    P    K S P           S    
Sbjct: 68  KIVHTHDSEAAAAEPKTSPFRSRGTPSLPSARSIPGRRSKYSKP----------DSGPNR 127

Query: 143 PISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREP- 202
           P +K +   + P+   +  +  V LSEDG++YVI+GAPFEFKYSYTETPKVKP+KLREP 
Sbjct: 128 PKNKPRVPDSPPQ---LDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPA 187

Query: 203 YAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGFSAWTILSRF----WTKVC 262
           YAPFGPTTM RPWTGRAPLP S+K   EFDSF+LPP  KKG         F      +  
Sbjct: 188 YAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRYV 247

Query: 263 DVEEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHAL 322
             +EEILGEPLTKEE++ L+  C+ + RQLN+G             + +    + NIH L
Sbjct: 248 YSKEEILGEPLTKEEVRELVTSCLKTTRQLNMG------------RDGLTHNMLNNIHDL 307

Query: 323 WKRRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPL 356
           WKRRRVCKIKCKGVCT                      G  L+L+RGRNYN++TRPRFPL
Sbjct: 308 WKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPL 361

[Close]
BLAST of CsGy2G000930 vs. Swiss-Prot
Match: sp|Q5VMQ5|CAF1P_ORYSJ (CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0495900 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.2e-61
Identity = 132/289 (45.67%), Postives = 165/289 (57.09%), Query Frame = 0 

Query: 95  PPSTAMKRSGPSALHHLHQDLQSLVENPISKTKKTMNAPEERHIGVEANVSLSEDGVSYV 154
           P + A +R  P+  H     +       I    K +  PE       A V ++E G++Y 
Sbjct: 36  PAAVAKRRRAPAPSHPAFSSV-------IRGRPKKVPIPENGE--PAAGVRVTERGLAYH 95

Query: 155 IDGAPFEFKYSYTETPKVKPIKLRE-PYAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQ 214
           +DGAPFEF+YSYTETP+ +P+ LRE P+ PFGP    RPWTGR PLP S+K+LPEFDSF 
Sbjct: 96  LDGAPFEFQYSYTETPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFM 155

Query: 215 LPPKNKKGFSAWTILSRFWTKV-----CDVEEEILGEPLTKEEIKALIRGCINSNRQLNI 274
           LPP  KKG         F             EE+LGEPLTKEE+  L++  + + RQLNI
Sbjct: 156 LPPPGKKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNI 215

Query: 275 GILTPQFFYLAISVEMVNAQYVENIHALWKRRRVCKIKCKGVCT---------------- 334
           G             + +    +ENIH+ WKR+RVCKIKCKGVCT                
Sbjct: 216 G------------RDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGG 275

Query: 335 ------GWALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPDAL 356
                 G  ++L+RGRNYNY+TRP +PLMLWKPAAPVYPRLVK IPD L
Sbjct: 276 KVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGL 303

[Close]
BLAST of CsGy2G000930 vs. Swiss-Prot
Match: sp|Q84N49|CAF1P_MAIZE (CRS2-associated factor 1, chloroplastic OS=Zea mays OX=4577 GN=CAF1 PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-59
Identity = 121/242 (50.00%), Postives = 151/242 (62.40%), Query Frame = 0 

Query: 142 ANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLRE-PYAPFGPTTMSRPWTGRAPLP 201
           A V +++ G+SY +DGAPFEF+YSYTE P+ +P+ LRE P+ PFGP    RPWTGR PLP
Sbjct: 74  AGVRVTDRGISYRLDGAPFEFQYSYTEAPRARPVALREAPFMPFGPEATPRPWTGRKPLP 133

Query: 202 PSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCDV-EEEILGEPLTKEEIKAL 261
            S+K+LPEFDSF LP   KKG     S    L+    +   V  E+ILGEPLTKEE+  L
Sbjct: 134 KSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSEL 193

Query: 262 IRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWKRRRVCKIKCKGVCT--- 321
           ++G + S RQLN+G             + +    +ENIH+ WKR+RVCKIKCKGVCT   
Sbjct: 194 VKGSLKSKRQLNMG------------RDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDM 253

Query: 322 -------------------GWALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPD 356
                              G  ++L+RGRNYNY+TRP FPLMLWKP APVYPRLV  +P 
Sbjct: 254 DNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPG 303

[Close]
BLAST of CsGy2G000930 vs. Swiss-Prot
Match: sp|Q9LDA9|CAF2P_ARATH (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-51
Identity = 124/317 (39.12%), Postives = 171/317 (53.94%), Query Frame = 0 

Query: 78  SVPPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVENPISKTKKTMNAPEER- 137
           S PP+  S+S    RP PP    K +  +   +   + Q+       ++   +  P  R 
Sbjct: 18  STPPMADSSSG-TFRPAPPIPIPKYAPSNRNRNQKTNHQTDTNPKKPQSNPALKLPHHRT 77

Query: 138 ------HIGV-----EANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREP-YAPF 197
                   GV     +  + + + GVSY + GAPFEF++SY+ETPKVKP+ +REP + PF
Sbjct: 78  RYYKPVKEGVISSDGDRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPVGIREPAFMPF 137

Query: 198 GPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGFSAWTILSRF----WTKVCDVEE 257
            P TM RPWTG+APL  SKKK+P FDSF  PP  K G     +        + K     E
Sbjct: 138 APPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNRE 197

Query: 258 EILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWKRR 317
           E+LGEPL + E   LI+  ++ NRQ+N+G             +      +E IH+ WKRR
Sbjct: 198 EVLGEPLKRWEKGMLIKPHMHDNRQVNLG------------RDGFTHNMLELIHSHWKRR 257

Query: 318 RVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLMLWK 356
           RVCK++CKGV T                      G  +YL+RGRNYNY+TRP++PLMLWK
Sbjct: 258 RVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWK 317

[Close]
BLAST of CsGy2G000930 vs. Swiss-Prot
Match: sp|Q84N48|CAF2P_MAIZE (CRS2-associated factor 2, chloroplastic OS=Zea mays OX=4577 GN=CAF2 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.0e-39
Identity = 94/247 (38.06%), Postives = 134/247 (54.25%), Query Frame = 0 

Query: 144 VSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREP-YAPFGPTTMSRPWTGRAPLPPS 203
           V +   G+S+ + GAPF+F++SY+E P+  P+ +REP + PF P TM RPWTG+APL   
Sbjct: 116 VVVGPSGLSFRLPGAPFDFQFSYSEAPRAPPLAIREPAFLPFAPPTMPRPWTGKAPLLTK 175

Query: 204 KKKLPEFD---SFQLPPKNKKGFSAWTI-----------LSRFWTKVCDVEEEILGEPLT 263
           ++K           L  +  +  SA  I           L+R         EE+LGEPLT
Sbjct: 176 EEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPLT 235

Query: 264 KEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWKRRRVCKIKCK 323
             E++AL++  I+ NRQLNIG             + +    +E IH  W+R+ +CK++C+
Sbjct: 236 PSEVRALVKPHISHNRQLNIG------------RDGLTHNMLEMIHCHWRRQEICKVRCR 295

Query: 324 GVCT----------------------GWALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPR 354
           GV T                      G  ++LYRGR+Y+ KTRPR+PLMLWKPA PVYP+
Sbjct: 296 GVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPK 350

[Close]
BLAST of CsGy2G000930 vs. TrEMBL
Match: tr|A0A0A0LEZ8|A0A0A0LEZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002010 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.1e-103
Identity = 225/379 (59.37%), Postives = 239/379 (63.06%), Query Frame = 0 

Query: 19  QIAIPFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAE--------NSSSADGLSKKSRT 78
           ++  PFPI          P   TLTEIRFSRWYNANAE             D + ++ R 
Sbjct: 4   KLPFPFPIFTPQFNPNSTPSHRTLTEIRFSRWYNANAEKFEQRRRSQQEIEDEIRRERRF 63

Query: 79  KSAANAASVPPLKSSTSAIPTRPL-----PPSTAMKRSGPSALHHLHQDLQSLVENP--- 138
            SAA    +    S +SAI           P                        +P   
Sbjct: 64  SSAAKIVDLCDSDSPSSAIDRNETFRSVGTPXXXXXXXXXXXXXXXXXXXXXXXXSPFRQ 123

Query: 139 ISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA 198
           +SKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA
Sbjct: 124 VSKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLREPYA 183

Query: 199 PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCDV 258
           PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKG     +    L+    K    
Sbjct: 184 PFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGVKPVQAPGPFLAGSGPKYVMS 243

Query: 259 EEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWK 318
            EEILGEPLTKEEIKALIRGCINSNRQLNIG             + +    +ENIHALWK
Sbjct: 244 REEILGEPLTKEEIKALIRGCINSNRQLNIG------------RDGLTHNMLENIHALWK 303

Query: 319 RRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLML 356
           RRRVCKIKCKGVCT                      G ALYLYRGRNYNYKTRPRFPLML
Sbjct: 304 RRRVCKIKCKGVCTVDMDNVKQQLEERTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLML 363

[Close]
BLAST of CsGy2G000930 vs. TrEMBL
Match: tr|A0A1S3C8A5|A0A1S3C8A5_CUCME (CRS2-associated factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497971 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.5e-96
Identity = 213/380 (56.05%), Postives = 231/380 (60.79%), Query Frame = 0 

Query: 19  QIAIPFPISLLNLTLIQLPRTVTLTEIRFSRWYNANAE--------NSSSADGLSKKSRT 78
           ++  PFPI          P   TLTEIRFSRW NANAE             D + ++ R 
Sbjct: 4   KLPFPFPIFTPQFNPNSTPSHRTLTEIRFSRWNNANAEKFEQRRRSQQEIEDEIRRERRF 63

Query: 79  KSAANAASVPPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVE--------NP 138
            SA N   +    S +SAI       S                                 
Sbjct: 64  SSATNIVDLCDSDSPSSAIDRTETFRSVGTXXXXXXXXXXXXXXXXXXXXXXXXXSPFRQ 123

Query: 139 ISKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLRE-PY 198
           +SKTKKTMNAP+ERHIGVEANVSLSEDGVS+VIDGAPFEFKYSYTETPK+KPIKLRE PY
Sbjct: 124 VSKTKKTMNAPKERHIGVEANVSLSEDGVSFVIDGAPFEFKYSYTETPKLKPIKLREPPY 183

Query: 199 APFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCD 258
           APFGPTTM RPWTGRAPLPPSKKKLPEFDSFQLPPKNKKG     +    L+    K   
Sbjct: 184 APFGPTTMPRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGVKPVQAPGPFLAGSGPKYVM 243

Query: 259 VEEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALW 318
             EEILGEPLT+EEIK LIRGCI SNRQLNIG             + +    +ENIHA W
Sbjct: 244 SREEILGEPLTEEEIKMLIRGCIKSNRQLNIG------------RDGLTHNMLENIHAHW 303

Query: 319 KRRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPLM 356
           KRRRVCKIKCKGVCT                      G ALYLYRGRNYNYKTRPRFPLM
Sbjct: 304 KRRRVCKIKCKGVCTVDMDNVKQQLEEKTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLM 363

[Close]
BLAST of CsGy2G000930 vs. TrEMBL
Match: tr|A0A059BPK9|A0A059BPK9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01559 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.6e-73
Identity = 146/246 (59.35%), Postives = 167/246 (67.89%), Query Frame = 0 

Query: 141 EANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLRE-PYAPFGPTTMSRPWTGRAPL 200
           +ANV LSEDG+SYVIDGAPFEFKYSYTETPKVKP+KLRE PYAPFGPTTMSRPWTGRAPL
Sbjct: 4   KANVVLSEDGLSYVIDGAPFEFKYSYTETPKVKPLKLREAPYAPFGPTTMSRPWTGRAPL 63

Query: 201 PPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCDVEEEILGEPLTKEEIKAL 260
           PP KKKL EFDSF+LPP  KKG     S    L     +     EEILGEPLT+EE++ L
Sbjct: 64  PPCKKKLKEFDSFRLPPPGKKGVKPVQSPGPFLPGRGPRYVKTREEILGEPLTEEEVRDL 123

Query: 261 IRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWKRRRVCKIKCKGVCT--- 320
           + GC+ S RQ+N+G             + +    ++NIHA WKRRRVCKIKCKGVCT   
Sbjct: 124 VNGCLKSKRQMNMG------------RDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDM 183

Query: 321 -------------------GWALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPD 360
                              G  LYL+RGRNYNY+TRPRFPLMLWKP  PVYPRL+K +P+
Sbjct: 184 DNVKQQLEERTGGKIIYSKGGVLYLFRGRNYNYRTRPRFPLMLWKPITPVYPRLIKRVPE 237

[Close]
BLAST of CsGy2G000930 vs. TrEMBL
Match: tr|A0A1Q3D1H5|A0A1Q3D1H5_CEPFO (CRS1_YhbY domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29797 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.7e-73
Identity = 143/242 (59.09%), Postives = 169/242 (69.83%), Query Frame = 0 

Query: 141 EANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLRE-PYAPFGPTTMSRPWTGRAPL 200
           +A+V++S+DG+SYVIDGAPFEFKYSYTETPKVKP+KLRE P+APFGPTTM+RPWTGRAP 
Sbjct: 146 KADVAVSDDGISYVIDGAPFEFKYSYTETPKVKPLKLREPPFAPFGPTTMARPWTGRAPF 205

Query: 201 PPSKKKLPEFDSFQLPPKNKKGF----SAWTILSRFWTKVCDVEEEILGEPLTKEEIKAL 260
           PPSKKK+ EFDSF LPP NKKG          LS    +     EEILGEPLT EE+K+L
Sbjct: 206 PPSKKKMKEFDSFVLPPANKKGVKPVQKPGPYLSGSGPRYVYTREEILGEPLTAEEVKSL 265

Query: 261 IRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHALWKRRRVCKIKCKGVCT--- 320
           + GC+ +NRQLNIG             + +    ++NIHA WKRRRVCKIKCKGVCT   
Sbjct: 266 VDGCLKTNRQLNIG------------RDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDM 325

Query: 321 -------------------GWALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPD 356
                              G ALYL+RGRNYNYK RPRFPLMLW+P  PVYPRL++H+P+
Sbjct: 326 QNVCQQLEERTGGKIIYKKGGALYLFRGRNYNYKFRPRFPLMLWRPVTPVYPRLIQHVPE 375

[Close]
BLAST of CsGy2G000930 vs. TrEMBL
Match: tr|A0A2I0IYF4|A0A2I0IYF4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_030561 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.9e-72
Identity = 173/381 (45.41%), Postives = 213/381 (55.91%), Query Frame = 0 

Query: 19  QIAIPFPI-------SLLNLTLIQLPRTVTLTEIRFSRWYNANAENSSS--------ADG 78
           + A+PFPI       S   L  +   R    TEIRFSRW NANAE  +          + 
Sbjct: 4   KFALPFPIFAPQKLNSNPQLPHLGATRHRPPTEIRFSRWNNANAERFNERRRAQQEIEND 63

Query: 79  LSKKSRTKSAANAASV-PPLKSSTSAIPTRPLPPSTAMKRSGPSALHHLHQDLQSLVENP 138
           + +  R  SA   A +  P  +  S+  T     +                         
Sbjct: 64  IRRGRRFDSATRIAQIDDPAAAQPSSEATFKSAGTXXXXXXXXXXXXXXXXXXXXPAFKK 123

Query: 139 ISKTKKTM-----NAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKL 198
           IS+ +KT      +   +  +   A+V+L++DGVSY+IDGAPFEFKYSYTETPKVKP++L
Sbjct: 124 ISRVQKTQIDGGTDTDNQAPVDRTASVALTDDGVSYIIDGAPFEFKYSYTETPKVKPLRL 183

Query: 199 RE-PYAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGFSAWTILSRFWTKVC 258
           RE PYAPFGPTTM RPWTGRAPLPPSKKKL EFDSF+LPP  KKG         +     
Sbjct: 184 REAPYAPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFKLPPPGKKGVKPVQAPGPYVRS-- 243

Query: 259 DVEEEILGEPLTKEEIKALIRGCINSNRQLNIGILTPQFFYLAISVEMVNAQYVENIHAL 318
              EEILGEPL+KEE+K LIRGC+ S RQ+N+G             + +    +ENIHA 
Sbjct: 244 --REEILGEPLSKEEVKELIRGCMKSQRQMNLG------------RDGLTHNMLENIHAH 303

Query: 319 WKRRRVCKIKCKGVCT----------------------GWALYLYRGRNYNYKTRPRFPL 356
           WKRRRVCKIKCKGVCT                      G  +YL+RGRNYNY+TRPRFPL
Sbjct: 304 WKRRRVCKIKCKGVCTVDMDNVKQQLEERTGGKIIYSNGGVIYLFRGRNYNYRTRPRFPL 363

The following BLAST results are available for this feature:
BLAST of CsGy2G000930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139352.13.2e-10359.37PREDICTED: CRS2-associated factor 1, chloroplastic [Cucumis sativus] >KGN60595.1... [more]
XP_008458627.11.4e-9556.05PREDICTED: CRS2-associated factor 1, chloroplastic [Cucumis melo][more]
XP_023547205.14.6e-9455.15CRS2-associated factor 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] ... [more]
XP_022946780.16.7e-9354.88CRS2-associated factor 1, chloroplastic [Cucurbita moschata][more]
XP_022999431.12.5e-9254.62CRS2-associated factor 1, chloroplastic isoform X1 [Cucurbita maxima][more]
BLAST of CsGy2G000930 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20020.17.9e-7244.88RNA-binding CRS1 / YhbY (CRM) domain-containing protein[more]
AT1G23400.18.2e-5339.12RNA-binding CRS1 / YhbY (CRM) domain-containing protein[more]
AT5G54890.13.5e-2735.19RNA-binding CRS1 / YhbY (CRM) domain-containing protein[more]
AT4G31010.15.6e-2534.04RNA-binding CRS1 / YhbY (CRM) domain-containing protein[more]
BLAST of CsGy2G000930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SL79|CAF1P_ARATH1.4e-7044.88CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g2... [more]
sp|Q5VMQ5|CAF1P_ORYSJ1.2e-6145.67CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947... [more]
sp|Q84N49|CAF1P_MAIZE1.9e-5950.00CRS2-associated factor 1, chloroplastic OS=Zea mays OX=4577 GN=CAF1 PE=1 SV=1[more]
sp|Q9LDA9|CAF2P_ARATH1.5e-5139.12CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g2... [more]
sp|Q84N48|CAF2P_MAIZE5.0e-3938.06CRS2-associated factor 2, chloroplastic OS=Zea mays OX=4577 GN=CAF2 PE=1 SV=1[more]
BLAST of CsGy2G000930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEZ8|A0A0A0LEZ8_CUCSA2.1e-10359.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002010 PE=4 SV=1[more]
tr|A0A1S3C8A5|A0A1S3C8A5_CUCME9.5e-9656.05CRS2-associated factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497971 ... [more]
tr|A0A059BPK9|A0A059BPK9_EUCGR6.6e-7359.35Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01559 PE=4 SV... [more]
tr|A0A1Q3D1H5|A0A1Q3D1H5_CEPFO8.7e-7359.09CRS1_YhbY domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v... [more]
tr|A0A2I0IYF4|A0A2I0IYF4_PUNGR1.9e-7245.41Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_030561 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035920YhbY_like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G000930.1CsGy2G000930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..93
NoneNo IPR availablePANTHERPTHR31846:SF8CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTICcoord: 21..312
coord: 315..355
NoneNo IPR availablePANTHERPTHR31846FAMILY NOT NAMEDcoord: 21..312
coord: 315..355
IPR035920YhbY-like superfamilySUPERFAMILYSSF75471YhbY-likecoord: 282..330

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G000930Cla016783Watermelon (97103) v1cgybwmB154
CsGy2G000930Csa2G002010Cucumber (Chinese Long) v2cgybcuB056
CsGy2G000930MELO3C004577Melon (DHL92) v3.5.1cgybmeB121
CsGy2G000930ClCG11G002280Watermelon (Charleston Gray)cgybwcgB094
CsGy2G000930CSPI02G00960Wild cucumber (PI 183967)cgybcpiB056
CsGy2G000930CmaCh05G013560Cucurbita maxima (Rimu)cgybcmaB257
CsGy2G000930CmoCh05G013650Cucurbita moschata (Rifu)cgybcmoB243
CsGy2G000930Lsi11G002420Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G000930Cp4.1LG11g11320Cucurbita pepo (Zucchini)cgybcpeB168
CsGy2G000930MELO3C004577.2Melon (DHL92) v3.6.1cgybmedB119
CsGy2G000930CsaV3_2G002040Cucumber (Chinese Long) v3cgybcucB064
CsGy2G000930Cla97C11G208680Watermelon (97103) v2cgybwmbB098
CsGy2G000930Bhi06G001705Wax gourdcgybwgoB127
CsGy2G000930Carg10849Silver-seed gourdcarcgybB0573
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G000930Cucurbita maxima (Rimu)cgybcmaB154
CsGy2G000930Cucurbita maxima (Rimu)cgybcmaB163
CsGy2G000930Cucurbita maxima (Rimu)cgybcmaB178
CsGy2G000930Cucurbita maxima (Rimu)cgybcmaB175
CsGy2G000930Cucurbita moschata (Rifu)cgybcmoB146
CsGy2G000930Cucurbita moschata (Rifu)cgybcmoB155
CsGy2G000930Cucurbita moschata (Rifu)cgybcmoB169
CsGy2G000930Cucurbita moschata (Rifu)cgybcmoB170
CsGy2G000930Cucurbita pepo (Zucchini)cgybcpeB204
CsGy2G000930Cucurbita pepo (Zucchini)cgybcpeB232
CsGy2G000930Cucurbita pepo (Zucchini)cgybcpeB269
CsGy2G000930Cucurbita pepo (Zucchini)cgybcpeB272
CsGy2G000930Watermelon (97103) v1cgybwmB165
CsGy2G000930Silver-seed gourdcarcgybB0041
CsGy2G000930Silver-seed gourdcarcgybB0137
CsGy2G000930Silver-seed gourdcarcgybB0886
CsGy2G000930Watermelon (97103) v2cgybwmbB143
CsGy2G000930Watermelon (97103) v2cgybwmbB150
CsGy2G000930Wax gourdcgybwgoB138
CsGy2G000930Wax gourdcgybwgoB205