CsGy2G000060 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G000060
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein LAZ1 homolog 2 isoform X2
Location	Chr2 : 81150 .. 82593 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACATCAATTTCTATCACACCACAACAAGAAGACATATATGGAGATTTGTATCAACCAGCACTTATTATCGCAACATGCTTTGCGGTTACCGCTCTGATGCTCTCCCTTTTCCTCATTCTACAGCATCTCAAGTCTTACTCTAATCCTTCGGTAACCACTTTTTTTGTCACCACTCCTTAACTACAAATGTGAGAACTAGGATCTTCATTTAATTACATGACGATGCGTCGTCTAAGATCATATCACACACCTATGACCTATGCATTGCCCTCAGGAACAAAAGTGGATTGTTGCGGTTCTTTTTATGGTTCCTGTATATGCCACCCAGTCGGTGAGTCTTTCAATCCACCCTCATGGTTGCACATATATTTTTAGTCTCTCACATTTCACACAAGTACAACTTGATTAGTTAAAACCAAACTTATGGTTGCACTTACATTTTTAGTCCCTAAACTTTCATACAAGTAAAACTTGATTAGTTAAAGCTCTAGTTGCTGACGATTTTAGTGTTTGTATTCTCTAGTATATATCCAGTTATAAGTCACAATATTATGTAATCCCTGTACTTAAAATTTTGCAACACTAGTAATTTAGTCTCCTATATTATGAAAAAACTACAAAATTAATTGCGATTTTATCCTATAATGACTTTTCCATGCTTCCAAGGTACATGTATAGTCAAAACAAAAAGTATTCCTCGAGCTTGATATAAATATTTTTTTTTGCTACACGTTAATGGCGTTGGGTCGTTTCTGCTTTCCCAGATTATATCTTTATGGAATTCGAGATTTTCCCTTGCATGTGATATCTTACGGAACTGCTACGAAGCCTTCGCCTTGTATTCTTTTGGAAGATATTTGATTGCTAGTCTTGGTAAGCTTCAGGCCTACCCATGTTATTGTGATTTATATATATACACACACACGTCTATTTCCATATACATATATGTAGTATATATATGGAAATATAATTATGGAACACTGTTCTTCGTTTCAAGTAGATTCTCTTCTCTAAGAAAAATACCTAAGTTCATCTTGGCCAACATTTGCGGATCTCACAAATTGTCAAATCATAATGTGATGCATGACATTAGTTTTTCAAGTATTAACAAATTCGCGTACACAAGTGTTGTTCTTTATTCTTCTCCTTTAATTAATTTTTATAAAAACAGTATTGGGTGAGTGGGTGAGTGGTTCTTACAGAACTAGTCGAAACTTGAAACTACATCACATGCATCAAATTATAATATAGTTTAAAACAGTGTTTGGTTGAGTATGGTTCTTAAATAATCAGTTGGATAACCTTTGTTCTAAATAGAGATCCGTTCCATTTTTACTAATTAGAGTACTGACTTTGATGCAAATAAGTAATTTCATTCTAGGAGAATGAAAGCATGCAAAGTGGTCAAGTACGAGGATTTTTTTCCGAGGAGACGTAA

mRNA sequence

ATGAAGACATCAATTTCTATCACACCACAACAAGAAGACATATATGGAGATTTGTATCAACCAGCACTTATTATCGCAACATGCTTTGCGGTTACCGCTCTGATGCTCTCCCTTTTCCTCATTCTACAGCATCTCAAGTCTTACTCTAATCCTTCGGAGAATGAAAGCATGCAAAGTGGTCAAGTACGAGGATTTTTTTCCGAGGAGACGTAA

Coding sequence (CDS)

ATGAAGACATCAATTTCTATCACACCACAACAAGAAGACATATATGGAGATTTGTATCAACCAGCACTTATTATCGCAACATGCTTTGCGGTTACCGCTCTGATGCTCTCCCTTTTCCTCATTCTACAGCATCTCAAGTCTTACTCTAATCCTTCGGAGAATGAAAGCATGCAAAGTGGTCAAGTACGAGGATTTTTTTCCGAGGAGACGTAA

Protein sequence

MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENESMQSGQVRGFFSEET

Homology

[Close]

BLAST of CsGy2G000060 vs. NCBI nr
Match: XP_004141180.1 (PREDICTED: transmembrane protein 184C isoform X2 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 9.6e-20
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENE 56
          MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSE +
Sbjct: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSEQK 55

[Close]

BLAST of CsGy2G000060 vs. NCBI nr
Match: XP_011648574.1 (PREDICTED: transmembrane protein 184C isoform X1 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 9.6e-20
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENE 56
          MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSE +
Sbjct: 9  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSEQK 63

[Close]

BLAST of CsGy2G000060 vs. NCBI nr
Match: XP_008459962.1 (PREDICTED: protein LAZ1 homolog 2 isoform X1 [Cucumis melo] >XP_016902105.1 PREDICTED: protein LAZ1 homolog 2 isoform X1 [Cucumis melo] >XP_016902106.1 PREDICTED: protein LAZ1 homolog 2 isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENE 56
          MKTSISIT QQEDIYGDLYQPAL IATCFAV AL+LSLFLILQHLKSYSNPSE +
Sbjct: 8  MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPSEQK 62

[Close]

BLAST of CsGy2G000060 vs. NCBI nr
Match: XP_008459979.1 (PREDICTED: protein LAZ1 homolog 2 isoform X2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENE 56
          MKTSISIT QQEDIYGDLYQPAL IATCFAV AL+LSLFLILQHLKSYSNPSE +
Sbjct: 1  MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPSEQK 55

[Close]

BLAST of CsGy2G000060 vs. NCBI nr
Match: XP_008459995.1 (PREDICTED: protein LAZ1 homolog 2 isoform X4 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-16
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPS 53
          MKTSISIT QQEDIYGDLYQPAL IATCFAV AL+LSLFLILQHLKSYSNPS
Sbjct: 8  MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPS 59

[Close]

BLAST of CsGy2G000060 vs. TAIR10
Match: AT1G23070.1 (Protein of unknown function (DUF300))

HSP 1 Score: 45.8 bits (107), Expect = 1.2e-05
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 15 YGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENE 56
          Y DL+ P+LII   FA  A+ LSL+ ILQHL+ Y+NP+E +
Sbjct: 9  YRDLHLPSLIIGGSFATVAICLSLYSILQHLRFYTNPAEQK 49

[Close]

BLAST of CsGy2G000060 vs. Swiss-Prot
Match: sp|Q5BPZ5|LAZH2_ARATH (Protein LAZ1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g23070 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-04
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 15 YGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENE 56
          Y DL+ P+LII   FA  A+ LSL+ ILQHL+ Y+NP+E +
Sbjct: 9  YRDLHLPSLIIGGSFATVAICLSLYSILQHLRFYTNPAEQK 49

[Close]

BLAST of CsGy2G000060 vs. TrEMBL
Match: tr|A0A1S4E1K4|A0A1S4E1K4_CUCME (protein LAZ1 homolog 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-17
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENE 56
          MKTSISIT QQEDIYGDLYQPAL IATCFAV AL+LSLFLILQHLKSYSNPSE +
Sbjct: 8  MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPSEQK 62

[Close]

BLAST of CsGy2G000060 vs. TrEMBL
Match: tr|A0A1S3CBG0|A0A1S3CBG0_CUCME (protein LAZ1 homolog 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-17
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSENE 56
          MKTSISIT QQEDIYGDLYQPAL IATCFAV AL+LSLFLILQHLKSYSNPSE +
Sbjct: 1  MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPSEQK 55

[Close]

BLAST of CsGy2G000060 vs. TrEMBL
Match: tr|A0A1S3CBH9|A0A1S3CBH9_CUCME (protein LAZ1 homolog 2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPS 53
          MKTSISIT QQEDIYGDLYQPAL IATCFAV AL+LSLFLILQHLKSYSNPS
Sbjct: 8  MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPS 59

[Close]

BLAST of CsGy2G000060 vs. TrEMBL
Match: tr|A0A1S3CB20|A0A1S3CB20_CUCME (protein LAZ1 homolog 2 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-08
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLF 40
          MKTSISIT QQEDIYGDLYQPAL IATCFAV AL++SL+
Sbjct: 8  MKTSISITLQQEDIYGDLYQPALTIATCFAVIALIISLW 46

[Close]

BLAST of CsGy2G000060 vs. TrEMBL
Match: tr|A0A1S3CCP7|A0A1S3CCP7_CUCME (protein LAZ1 homolog 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-07
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 1  MKTSISITPQQEDIYGDLYQPALIIATCFAVTAL 35
          MKTSISIT QQEDIYGDLYQPAL IATCFAV AL
Sbjct: 8  MKTSISITLQQEDIYGDLYQPALTIATCFAVIAL 41

The following BLAST results are available for this feature:

BLAST of CsGy2G000060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141180.1	9.6e-20	96.36	PREDICTED: transmembrane protein 184C isoform X2 [Cucumis sativus]	[more]
XP_011648574.1	9.6e-20	96.36	PREDICTED: transmembrane protein 184C isoform X1 [Cucumis sativus]	[more]
XP_008459962.1	7.6e-17	89.09	PREDICTED: protein LAZ1 homolog 2 isoform X1 [Cucumis melo] >XP_016902105.1 PRED...	[more]
XP_008459979.1	7.6e-17	89.09	PREDICTED: protein LAZ1 homolog 2 isoform X2 [Cucumis melo]	[more]
XP_008459995.1	2.9e-16	92.31	PREDICTED: protein LAZ1 homolog 2 isoform X4 [Cucumis melo]	[more]

BLAST of CsGy2G000060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23070.1	1.2e-05	53.66	Protein of unknown function (DUF300)	[more]

BLAST of CsGy2G000060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5BPZ5\|LAZH2_ARATH	2.2e-04	53.66	Protein LAZ1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g23070 PE=2 SV=1	[more]

BLAST of CsGy2G000060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E1K4\|A0A1S4E1K4_CUCME	5.0e-17	89.09	protein LAZ1 homolog 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 S...	[more]
tr\|A0A1S3CBG0\|A0A1S3CBG0_CUCME	5.0e-17	89.09	protein LAZ1 homolog 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 S...	[more]
tr\|A0A1S3CBH9\|A0A1S3CBH9_CUCME	1.9e-16	92.31	protein LAZ1 homolog 2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 S...	[more]
tr\|A0A1S3CB20\|A0A1S3CB20_CUCME	4.2e-08	84.62	protein LAZ1 homolog 2 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 S...	[more]
tr\|A0A1S3CCP7\|A0A1S3CCP7_CUCME	6.1e-07	91.18	protein LAZ1 homolog 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498920 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005178	Ostalpha/TMEM184C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G000060.1	CsGy2G000060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005178	Organic solute transporter subunit alpha/Transmembrane protein 184	PFAM	PF03619	Solute_trans_a	coord: 23..54 e-value: 8.0E-6 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G000060	CSPI02G00060	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G000060	CmaCh12G013320	Cucurbita maxima (Rimu)	cgybcmaB185
CsGy2G000060	MELO3C004661.2	Melon (DHL92) v3.6.1	cgybmedB119
CsGy2G000060	CsaV3_2G001080	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G000060	Cla97C11G207740	Watermelon (97103) v2	cgybwmbB098
CsGy2G000060	Bhi06G001370	Wax gourd	cgybwgoB125
CsGy2G000060	Carg18651	Silver-seed gourd	carcgybB0887

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G000060	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G000060	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G000060	Cucurbita moschata (Rifu)	cgybcmoB178
CsGy2G000060	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G000060	Cucurbita pepo (Zucchini)	cgybcpeB225
CsGy2G000060	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G000060	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G000060	Melon (DHL92) v3.5.1	cgybmeB121
CsGy2G000060	Watermelon (Charleston Gray)	cgybwcgB094
CsGy2G000060	Watermelon (97103) v1	cgybwmB154
CsGy2G000060	Silver-seed gourd	carcgybB0573