CsGy1G032320 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G032320
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionGlycosyltransferase
LocationChr1 : 31927998 .. 31928615 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAAAGAGTGGAAGGTCATGCTGTGTGCATTCCAGTTCCAGTTCAAAGCCATGTAAACGCAATGCTAAGTGTTGCAAAGCTTCTCACCAAAGAGGTTTTTTCATAACTTTTGTTATCACGGAATACACTCATAAACGCATTATAAGCTCTCGTGGCCTTCTTCTCTTGACGGTTTACTTAATTTTCAGTTCAAAACCATTTGGGATTATTGTGTGGAACCAATTGATGCTCCACAGAATTTTGCTTCTCTTGCGACTCCATTTCTAATGACTTTTTATCCCCATTTTGTGACTTGCTTTCTCAACTCAAAAATAACCATGAAATTCCTCCATTACTTGTATTATACCAGATGCTTTTATGTCATTCTGTATTCAAGCTGGATTGGAATTTAACATTCCAACTTCACAGTTTTGGCCTATTAGTGCTTGTAGCATCTGGGGATTTATCACTTCGACGAACTTGTGAAACGTGGGGCAGTTCATTTAAAGGTATTATCTTATTCCCAACTTTCTAAATTACATTGCTATAGAACTTCATTCTGCTGCTAATTCTTGTAACTTCTCGGAGGTTGGCTTCTGGTCAAATACCAAACCACGTGTGCTGTGCTCTATAA

mRNA sequence

ATGAGTAAAAGAGTGGAAGGTCATGCTGTGTGCATTCCAGTTCCAGTTCAAAGCCATGTAAACGCAATGCTAAGTGTTGCAAAGCTTCTCACCAAAGAGCATCTGGGGATTTATCACTTCGACGAACTTGTGAAACGTGGGGCAGTTCATTTAAAGAACTTCATTCTGCTGCTAATTCTTGTAACTTCTCGGAGGTTGGCTTCTGGTCAAATACCAAACCACGTGTGCTGTGCTCTATAA

Coding sequence (CDS)

ATGAGTAAAAGAGTGGAAGGTCATGCTGTGTGCATTCCAGTTCCAGTTCAAAGCCATGTAAACGCAATGCTAAGTGTTGCAAAGCTTCTCACCAAAGAGCATCTGGGGATTTATCACTTCGACGAACTTGTGAAACGTGGGGCAGTTCATTTAAAGAACTTCATTCTGCTGCTAATTCTTGTAACTTCTCGGAGGTTGGCTTCTGGTCAAATACCAAACCACGTGTGCTGTGCTCTATAA

Protein sequence

MSKRVEGHAVCIPVPVQSHVNAMLSVAKLLTKEHLGIYHFDELVKRGAVHLKNFILLLILVTSRRLASGQIPNHVCCAL
Homology
[Close]
BLAST of CsGy1G032320 vs. NCBI nr
Match: XP_004142536.1 (PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Cucumis sativus] >KGN66770.1 hypothetical protein Csa_1G687630 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 8.0e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MSKRVEGHAVCIPVPVQSHVNAMLSVAKLL 31
          MSKRVEGHAVCIPVPVQSHVNAMLSVAKLL
Sbjct: 1  MSKRVEGHAVCIPVPVQSHVNAMLSVAKLL 30

[Close]
BLAST of CsGy1G032320 vs. NCBI nr
Match: XP_008453670.2 (PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MSKRVEGHAVCIPVPVQSHVNAMLSVAKLL 31
          MSK+VEGHAVCIPVP+QSHV+AMLSVAKLL
Sbjct: 6  MSKKVEGHAVCIPVPLQSHVSAMLSVAKLL 35

[Close]
BLAST of CsGy1G032320 vs. TrEMBL
Match: tr|A0A0A0LY25|A0A0A0LY25_CUCSA (Glycosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_1G687630 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MSKRVEGHAVCIPVPVQSHVNAMLSVAKLL 31
          MSKRVEGHAVCIPVPVQSHVNAMLSVAKLL
Sbjct: 1  MSKRVEGHAVCIPVPVQSHVNAMLSVAKLL 30

[Close]
BLAST of CsGy1G032320 vs. TrEMBL
Match: tr|A0A1S3BXL8|A0A1S3BXL8_CUCME (Glycosyltransferase OS=Cucumis melo OX=3656 GN=LOC103494320 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-05
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MSKRVEGHAVCIPVPVQSHVNAMLSVAKLL 31
          MSK+VEGHAVCIPVP+QSHV+AMLSVAKLL
Sbjct: 6  MSKKVEGHAVCIPVPLQSHVSAMLSVAKLL 35

The following BLAST results are available for this feature:
BLAST of CsGy1G032320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142536.18.0e-07100.00PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Cucumis sativus] >KGN66770... [more]
XP_008453670.21.5e-0590.00PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Cucumis melo][more]
BLAST of CsGy1G032320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G032320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G032320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LY25|A0A0A0LY25_CUCSA5.3e-07100.00Glycosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_1G687630 PE=3 SV=1[more]
tr|A0A1S3BXL8|A0A1S3BXL8_CUCME1.0e-0590.00Glycosyltransferase OS=Cucumis melo OX=3656 GN=LOC103494320 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G032320.1CsGy1G032320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.2000coord: 3..67
e-value: 1.2E-5
score: 26.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G032320Cucurbita pepo (Zucchini)cgybcpeB112
CsGy1G032320Cucumber (Chinese Long) v2cgybcuB002
CsGy1G032320Bottle gourd (USVL1VR-Ls)cgyblsiB055
CsGy1G032320Melon (DHL92) v3.5.1cgybmeB041
CsGy1G032320Melon (DHL92) v3.6.1cgybmedB035
CsGy1G032320Watermelon (Charleston Gray)cgybwcgB071
CsGy1G032320Watermelon (Charleston Gray)cgybwcgB081
CsGy1G032320Watermelon (97103) v1cgybwmB089
CsGy1G032320Wild cucumber (PI 183967)cgybcpiB002
CsGy1G032320Silver-seed gourdcarcgybB0899
CsGy1G032320Cucumber (Chinese Long) v3cgybcucB001
CsGy1G032320Watermelon (97103) v2cgybwmbB071
CsGy1G032320Watermelon (97103) v2cgybwmbB079
CsGy1G032320Wax gourdcgybwgoB087
CsGy1G032320Wax gourdcgybwgoB100
CsGy1G032320Cucurbita maxima (Rimu)cgybcmaB027
CsGy1G032320Cucurbita moschata (Rifu)cgybcmoB027