CsGy1G030830 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G030830
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	tubulin-folding cofactor E isoform X1
Location	Chr1 : 29390316 .. 29390812 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCCCTTGTGGACGTGTGGCCTTGTCCAATGGCCAAAACCGTGAATTTTAACTTAAATGTCTTTGAGGTTTGGTCTGTATCACGCACTGCAGGAAGTTTTGACATCTGTTTAAATCTAATTCCATCCAAGAAATATAAGAGATGGATTGAAAGAACGAACGAGCATATTTCTGTTTTTTTTCCTTCTAATATTGTAATTGCTTTGTTCGTTGGCACTGGCAGTTTGGTGGTTATGAATATCATTGTTTTATTGTTTATCTCCATCTATTCCTGCAGGATATCAGTATCATTTGTGACCAGTTACAAGCTCTTGTAGCCATCATTTTATCGAACAACTTATTGTCGTGTGAAATCTCAGGGCCCCTTCAATTGAAACACATTCGTATTTTAGTTCTAAACAATACTGGAATAACTTGGATGCAGGTTAGTACCATTGAGAGAGGGGATACTTCTTTTGTTCCTTCTCATGTCCCTTATGTATCTGAAGTGTAA

mRNA sequence

ATGCATGCCCTTGTGGACGTGTGGCCTTGTCCAATGGCCAAAACCGTGAATTTTAACTTAAATGTCTTTGAGGATATCAGTATCATTTGTGACCAGTTACAAGCTCTTGTAGCCATCATTTTATCGAACAACTTATTGTCGTGTGAAATCTCAGGGCCCCTTCAATTGAAACACATTCGTATTTTAGTTCTAAACAATACTGGAATAACTTGGATGCAGGTTAGTACCATTGAGAGAGGGGATACTTCTTTTGTTCCTTCTCATGTCCCTTATGTATCTGAAGTGTAA

Coding sequence (CDS)

ATGCATGCCCTTGTGGACGTGTGGCCTTGTCCAATGGCCAAAACCGTGAATTTTAACTTAAATGTCTTTGAGGATATCAGTATCATTTGTGACCAGTTACAAGCTCTTGTAGCCATCATTTTATCGAACAACTTATTGTCGTGTGAAATCTCAGGGCCCCTTCAATTGAAACACATTCGTATTTTAGTTCTAAACAATACTGGAATAACTTGGATGCAGGTTAGTACCATTGAGAGAGGGGATACTTCTTTTGTTCCTTCTCATGTCCCTTATGTATCTGAAGTGTAA

Protein sequence

MHALVDVWPCPMAKTVNFNLNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIERGDTSFVPSHVPYVSEV

Homology

[Close]

BLAST of CsGy1G030830 vs. NCBI nr
Match: XP_011660191.1 (PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_011660192.1 PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_011660193.1 PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 20  LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
           L+ ++DISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 172 LSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 230

[Close]

BLAST of CsGy1G030830 vs. NCBI nr
Match: KGN66621.1 (hypothetical protein Csa_1G650080 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 20 LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
          L+ ++DISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 19 LSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 77

[Close]

BLAST of CsGy1G030830 vs. NCBI nr
Match: XP_011660189.1 (PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 20  LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
           L+ ++DISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 198 LSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 256

[Close]

BLAST of CsGy1G030830 vs. NCBI nr
Match: XP_008445986.1 (PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 9.3e-18
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 20  LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
           L+ ++DIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 213 LSDWKDISTLCDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 271

[Close]

BLAST of CsGy1G030830 vs. NCBI nr
Match: XP_008445987.1 (PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 9.3e-18
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 20  LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
           L+ ++DIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 181 LSDWKDISTLCDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 239

[Close]

BLAST of CsGy1G030830 vs. TAIR10
Match: AT1G71440.1 (tubulin folding cofactor E / Pfifferling (PFI))

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-09
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 23  FEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIER 80
           +E+I  +C+QL AL  + LS N LS +I    QLK+IR+LVLNN+G++W QV  + R
Sbjct: 175 WEEIGALCEQLPALTTLNLSCNSLSSDIKSLPQLKNIRVLVLNNSGLSWTQVEILRR 231

[Close]

BLAST of CsGy1G030830 vs. Swiss-Prot
Match: sp|Q8GRL7|TBCE_ARATH (Tubulin-folding cofactor E OS=Arabidopsis thaliana OX=3702 GN=TFCE PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-08
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 23  FEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIER 80
           +E+I  +C+QL AL  + LS N LS +I    QLK+IR+LVLNN+G++W QV  + R
Sbjct: 175 WEEIGALCEQLPALTTLNLSCNSLSSDIKSLPQLKNIRVLVLNNSGLSWTQVEILRR 231

[Close]

BLAST of CsGy1G030830 vs. TrEMBL
Match: tr|A0A0A0M333|A0A0A0M333_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G650080 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.5e-19
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 20 LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
          L+ ++DISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 19 LSDWKDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 77

[Close]

BLAST of CsGy1G030830 vs. TrEMBL
Match: tr|A0A1S3BEU4|A0A1S3BEU4_CUCME (tubulin-folding cofactor E isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488852 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 20  LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
           L+ ++DIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 172 LSDWKDISTLCDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 230

[Close]

BLAST of CsGy1G030830 vs. TrEMBL
Match: tr|A0A1S3BEN9|A0A1S3BEN9_CUCME (tubulin-folding cofactor E isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488852 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 20  LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
           L+ ++DIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 181 LSDWKDISTLCDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 239

[Close]

BLAST of CsGy1G030830 vs. TrEMBL
Match: tr|A0A1S3BDZ7|A0A1S3BDZ7_CUCME (tubulin-folding cofactor E isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488852 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 20  LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
           L+ ++DIS +CDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQV  ++
Sbjct: 213 LSDWKDISTLCDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVEILK 271

[Close]

BLAST of CsGy1G030830 vs. TrEMBL
Match: tr|A0A2P4MZ37|A0A2P4MZ37_QUESU (Tubulin-folding cofactor e OS=Quercus suber OX=58331 GN=CFP56_09762 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 20  LNVFEDISIICDQLQALVAIILSNNLLSCEISGPLQLKHIRILVLNNTGITWMQVSTIE 79
           L+ ++D+S IC+QL AL A+ LSNNL+S +I G  QLK IRILVLN+TGI W Q+  ++
Sbjct: 173 LSEWKDVSTICEQLPALAALNLSNNLMSSDICGLAQLKSIRILVLNDTGIKWTQIEKLK 231

The following BLAST results are available for this feature:

BLAST of CsGy1G030830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660191.1	1.4e-18	86.44	PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis sativus] >XP_011660192...	[more]
KGN66621.1	1.4e-18	86.44	hypothetical protein Csa_1G650080 [Cucumis sativus]	[more]
XP_011660189.1	1.4e-18	86.44	PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis sativus]	[more]
XP_008445986.1	9.3e-18	83.05	PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis melo]	[more]
XP_008445987.1	9.3e-18	83.05	PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis melo]	[more]

BLAST of CsGy1G030830 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71440.1	4.3e-09	49.12	tubulin folding cofactor E / Pfifferling (PFI)	[more]

BLAST of CsGy1G030830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GRL7\|TBCE_ARATH	7.8e-08	49.12	Tubulin-folding cofactor E OS=Arabidopsis thaliana OX=3702 GN=TFCE PE=2 SV=1	[more]

BLAST of CsGy1G030830 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M333\|A0A0A0M333_CUCSA	9.5e-19	86.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G650080 PE=4 SV=1	[more]
tr\|A0A1S3BEU4\|A0A1S3BEU4_CUCME	6.1e-18	83.05	tubulin-folding cofactor E isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488852 PE...	[more]
tr\|A0A1S3BEN9\|A0A1S3BEN9_CUCME	6.1e-18	83.05	tubulin-folding cofactor E isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488852 PE...	[more]
tr\|A0A1S3BDZ7\|A0A1S3BDZ7_CUCME	6.1e-18	83.05	tubulin-folding cofactor E isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488852 PE...	[more]
tr\|A0A2P4MZ37\|A0A2P4MZ37_QUESU	2.6e-08	55.93	Tubulin-folding cofactor e OS=Quercus suber OX=58331 GN=CFP56_09762 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004806	triglyceride lipase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G030830.1	CsGy1G030830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	SSF52075	Outer arm dynein light chain 1	coord: 10..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G030830	Csa1G650080	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G030830	ClCG03G011760	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G030830	CSPI01G31790	Wild cucumber (PI 183967)	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G030830	Cucurbita maxima (Rimu)	cgybcmaB013
CsGy1G030830	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G030830	Cucurbita moschata (Rifu)	cgybcmoB013
CsGy1G030830	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G030830	Cucurbita pepo (Zucchini)	cgybcpeB002
CsGy1G030830	Cucurbita pepo (Zucchini)	cgybcpeB039
CsGy1G030830	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G030830	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G030830	Melon (DHL92) v3.5.1	cgybmeB040
CsGy1G030830	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G030830	Melon (DHL92) v3.6.1	cgybmedB034
CsGy1G030830	Watermelon (97103) v1	cgybwmB018
CsGy1G030830	Silver-seed gourd	carcgybB0542
CsGy1G030830	Silver-seed gourd	carcgybB0955
CsGy1G030830	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G030830	Watermelon (97103) v2	cgybwmbB046
CsGy1G030830	Wax gourd	cgybwgoB094