CsGy1G030580 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G030580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description60S ribosomal protein L2, mitochondrial
LocationChr1 : 28964188 .. 28965820 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAATGGCATAACATGTGGGAAAGGGTGCTCTACTACCCCTCTAACCACTTTTACAAGTTCCTTAGTATTGATCTTATGTACATACTCTACTTAATTATTTCTTAATTTTTCAAAATTGGCAAGTGAAAAGTCACAGCTCCATGTCTTTGTGGGCATTAGCACACCTGAGTTATTCCCAACAATAAATACTAATAAAAAAAATAGGTTTTTTCAAATATAACAAAATAAATCAAAATATTTACAAATATAGCAAAATATCAAGGTTTATGGGTGAACAGACTTATATAATAGTTTATAGCGGTCTATCATAGATAAAATGTATGATATTTTGGGAACAACTTTTGAGAGAAATGAGAAAGAAGAAAGTTTGAGGAAAAAAAAAAGAAGAACAAAGAATGGACACCTTTAAGGGTAGTTTAAAACCAACATGCTCATCTTTGATGTCAGTTTAAAACCGACATTAAAGATTATGTTTTTTAAAACAATCATTGTACATACGTGTTTAGTTTTCTCTATCCAACATTTCATAAGCCAAAATTTCTTGTGATCAACTAGGACTATGAACCTTGGGTTGGTGACAAGCGATTGGGCTAGACCGAGTCTACTAACACTAACCATACTAAATTAGTCGTCAATCGATATTTGGTCTCTTAGTTCAAATCGCTTATTGTCAATCCTCAAACCCTCAAATCCAATTGTTAGTCACATCGTCCTCTATCATCAAATGTCAATTGTTAGTCTTAATTTTCAGGTCAAGGTCTCCAATCACAGCTAGCAGCCATTATTGGTCAACTTCAAAGATCTAGACTCCCCAAATGAGAGAGAAACTTAGAAGAAAAAACACGTTCTCTCTTTACGAAGTTCGAAAGTGGAGAACGCATAACATTCTCTGAGCACATAGGATGAAAGGTAAAGCTACCATTTCTTGAAGGAGTTTTAGGTGGCAAGAGACTTTAGGGCCTGTTGGAGGTGTTGATCATAAGGAACTGAAAGCAAAGAGGGATGAAGGTAGTTTACTTGCCAAGCTGATAGGCGAAGGATGGAATGTATAAAGTCAATCATGCATATGCCTTGTGACATGTTGGTCCTAAGCAATGTCTTGCGTGAAGGGACCCACCTAGAAAAGCTTGCCTCTAAGTTAGGAGAGCACTAAAATGGGACTCTGATGTGAATATCTAATTAATCACGCCACTAAGATGTCAAAAGGATTTCTAGGCATTGATGAATGGTCGACCACCTTTGACGTGAGAAGAGTAACATGCCTGAAGCATAACTGGTTGAACCAATATGAATGAGTGTTATCTTCGTGACCCAAACACGATTGGTGTTGACCACACTAGGTGCTATTGTGGTAGCAAGAGAGGCTAGATGATGACAATTGAGAGGTTCTCACTGAGCATTCCTAGTTGCACGGGAAGAGAGGTCAAATGGCAAGGTGATACACTTGTTTGGCTCATCATAGAATATAGCACACATCAAAACTAAGATTTGATTTGGAAACAAGGGCACAAAAAGCTTCGACAGAAAGGAAAGGCCTACCAGGTCGTATGCCCATGGGTGCAAAATTCTTCCTAAAAGTGCGAGCTGACTCAAAGACCTGGGACTTTGACCTTAGAAAGGAATGA

mRNA sequence

ATGGAAATGAATGGCATAACATGTGGGAAAGGGTGGCAAGAGACTTTAGGGCCTGTTGGAGGTGTTGATCATAAGGAACTGAAAGCAAAGAGGGATGAAGGTAGTTTACTTGCCAAGCTGATAGGCGAAGGATGGAATCACACATCAAAACTAAGATTTGATTTGGAAACAAGGGCACAAAAAGCTTCGACAGAAAGGAAAGGCCTACCAGGTCGTATGCCCATGGGTGCAAAATTCTTCCTAAAAGTGCGAGCTGACTCAAAGACCTGGGACTTTGACCTTAGAAAGGAATGA

Coding sequence (CDS)

ATGGAAATGAATGGCATAACATGTGGGAAAGGGTGGCAAGAGACTTTAGGGCCTGTTGGAGGTGTTGATCATAAGGAACTGAAAGCAAAGAGGGATGAAGGTAGTTTACTTGCCAAGCTGATAGGCGAAGGATGGAATCACACATCAAAACTAAGATTTGATTTGGAAACAAGGGCACAAAAAGCTTCGACAGAAAGGAAAGGCCTACCAGGTCGTATGCCCATGGGTGCAAAATTCTTCCTAAAAGTGCGAGCTGACTCAAAGACCTGGGACTTTGACCTTAGAAAGGAATGA

Protein sequence

MEMNGITCGKGWQETLGPVGGVDHKELKAKRDEGSLLAKLIGEGWNHTSKLRFDLETRAQKASTERKGLPGRMPMGAKFFLKVRADSKTWDFDLRKE
Homology
[Close]
BLAST of CsGy1G030580 vs. NCBI nr
Match: XP_025884631.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101261309, partial [Solanum lycopersicum])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 48/109 (44.04%), Postives = 55/109 (50.46%), Query Frame = 0 

Query: 13  QETLGPVGGVDHKELKAKRDEGSLLAKLIGEGW-NHTSKLRFDLETR------------- 72
           QETLG VG  +  E K K D+GSL AK IGEG  + T K+    E R             
Sbjct: 240 QETLGLVGASERNESKPKTDQGSLPAKPIGEGLKDGTRKVDLTREKRSNGGKAIRPFGSS 299

Query: 73  ----------------AQKASTERKGLPGRMPMGAKFFLKVRADSKTWD 92
                           A +A  ER+GLPGRMPMGA FF K RADS+TWD
Sbjct: 300 RSIAHIQXHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWD 348

[Close]
BLAST of CsGy1G030580 vs. NCBI nr
Match: OVA06704.1 (Ribosomal protein L2 [Macleaya cordata])

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 47/127 (37.01%), Postives = 57/127 (44.88%), Query Frame = 0 

Query: 13  QETLGPVGGVDHKELKAKRDEGSLLAKLIGEG------------------WN-------- 72
           QETLG VG  +H E K K D+GSL AK IGEG                  WN        
Sbjct: 250 QETLGLVGAAEHNESKPKTDQGSLPAKPIGEGPKDGACKVDRAPVVGALKWNFDRMRVSN 309

Query: 73  -------------------HTSKLRFDLETRAQKASTERKGLPGRMPMGAKFFLKVRADS 95
                              +  + +    +R  ++  ER+GLPGRMPMGA FF K RADS
Sbjct: 310 PAAEMSSGFLGLDEWPATFYVRRAKGPGHSRMNQSPAEREGLPGRMPMGAGFFEKARADS 369

[Close]
BLAST of CsGy1G030580 vs. NCBI nr
Match: PHU04911.1 (60S ribosomal protein L2, mitochondrial [Capsicum chinense])

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0 

Query: 12  WQETLGPVGGVDHKELKAKRDEGSLLAKLIGEGW-NHTSKL-RFDLETRA--QKASTERK 71
           WQETL  V   +  E K K D+GSL AK IG+G  + T K+ R  +  R    +A  +R+
Sbjct: 167 WQETLWLVVASERNESKPKMDQGSLPAKTIGKGLKDGTRKVDRAPVLERGNIHEAPAKRE 226

Query: 72  GLPGRMPMGAKFFLKVRADSKTWDFDL 95
           GLPGRMPMGA FF K RA+S+TWD  L
Sbjct: 227 GLPGRMPMGAGFFKKARANSETWDLGL 253

[Close]
BLAST of CsGy1G030580 vs. NCBI nr
Match: XP_023521202.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784913 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 47/113 (41.59%), Postives = 54/113 (47.79%), Query Frame = 0 

Query: 13  QETLGPVGGVDHKELKAKRDEGSLLAKLIGEG-WNHTSKLRFDLETR------------- 72
           QET G VGG +H E K + D  SL AK IGEG  +   K+    E R             
Sbjct: 256 QETDGLVGGAEHNESKPETDPASLPAKPIGEGPKDGACKVNLTREERSNGKKAIRPFGSS 315

Query: 73  -----------------AQKASTERKGLPGRMPMGAKFFLKVRADSKTWDFDL 95
                            A +A  ER+GLPGRMPMGA FF K RADS+TWD  L
Sbjct: 316 RSIAHIQTXYLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGL 368

[Close]
BLAST of CsGy1G030580 vs. NCBI nr
Match: NP_178797.2 (Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] >AEC06100.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana])

HSP 1 Score: 70.1 bits (170), Expect = 4.7e-09
Identity = 49/123 (39.84%), Postives = 57/123 (46.34%), Query Frame = 0 

Query: 13  QETLGPVGGVDHKELKAKRDEGSLLAKLIGEGWNHTSKLR----------FDL--ETRA- 72
           Q+TLG VG   HK+ K K D+G+L AK IGE       LR           DL  E R+ 
Sbjct: 251 QDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDLTREERSN 310

Query: 73  ----------------------------QKASTERKGLPGRMPMGAKFFLKVRADSKTWD 95
                                        +A TER+GLPGRMPMGA FF K RADS+TWD
Sbjct: 311 GKAIRPFGSSRSIAHIQISYLIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSETWD 370

[Close]
BLAST of CsGy1G030580 vs. TAIR10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-13
Identity = 49/123 (39.84%), Postives = 57/123 (46.34%), Query Frame = 0 

Query: 13  QETLGPVGGVDHKELKAKRDEGSLLAKLIGEGWNHTSKLR----------FDL--ETRA- 72
           Q+TLG VG   HK+ K K D+G+L AK IGE       LR           DL  E R+ 
Sbjct: 251 QDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDLTREERSN 310

Query: 73  ----------------------------QKASTERKGLPGRMPMGAKFFLKVRADSKTWD 95
                                        +A TER+GLPGRMPMGA FF K RADS+TWD
Sbjct: 311 GKAIRPFGSSRSIAHIQISYLIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSETWD 370

[Close]
BLAST of CsGy1G030580 vs. TrEMBL
Match: tr|A0A2G3BEJ0|A0A2G3BEJ0_CAPCH (60S ribosomal protein L2, mitochondrial OS=Capsicum chinense OX=80379 GN=BC332_25733 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-10
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0 

Query: 12  WQETLGPVGGVDHKELKAKRDEGSLLAKLIGEGW-NHTSKL-RFDLETRA--QKASTERK 71
           WQETL  V   +  E K K D+GSL AK IG+G  + T K+ R  +  R    +A  +R+
Sbjct: 167 WQETLWLVVASERNESKPKMDQGSLPAKTIGKGLKDGTRKVDRAPVLERGNIHEAPAKRE 226

Query: 72  GLPGRMPMGAKFFLKVRADSKTWDFDL 95
           GLPGRMPMGA FF K RA+S+TWD  L
Sbjct: 227 GLPGRMPMGAGFFKKARANSETWDLGL 253

[Close]
BLAST of CsGy1G030580 vs. TrEMBL
Match: tr|A0A200Q8E8|A0A200Q8E8_9MAGN (Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-10
Identity = 47/127 (37.01%), Postives = 57/127 (44.88%), Query Frame = 0 

Query: 13  QETLGPVGGVDHKELKAKRDEGSLLAKLIGEG------------------WN-------- 72
           QETLG VG  +H E K K D+GSL AK IGEG                  WN        
Sbjct: 250 QETLGLVGAAEHNESKPKTDQGSLPAKPIGEGPKDGACKVDRAPVVGALKWNFDRMRVSN 309

Query: 73  -------------------HTSKLRFDLETRAQKASTERKGLPGRMPMGAKFFLKVRADS 95
                              +  + +    +R  ++  ER+GLPGRMPMGA FF K RADS
Sbjct: 310 PAAEMSSGFLGLDEWPATFYVRRAKGPGHSRMNQSPAEREGLPGRMPMGAGFFEKARADS 369

[Close]
BLAST of CsGy1G030580 vs. TrEMBL
Match: tr|F4IMC7|F4IMC7_ARATH (Nucleic acid-binding, OB-fold-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g07715 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-09
Identity = 49/123 (39.84%), Postives = 57/123 (46.34%), Query Frame = 0 

Query: 13  QETLGPVGGVDHKELKAKRDEGSLLAKLIGEGWNHTSKLR----------FDL--ETRA- 72
           Q+TLG VG   HK+ K K D+G+L AK IGE       LR           DL  E R+ 
Sbjct: 251 QDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDLTREERSN 310

Query: 73  ----------------------------QKASTERKGLPGRMPMGAKFFLKVRADSKTWD 95
                                        +A TER+GLPGRMPMGA FF K RADS+TWD
Sbjct: 311 GKAIRPFGSSRSIAHIQISYLIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSETWD 370

[Close]
BLAST of CsGy1G030580 vs. TrEMBL
Match: tr|A0A2G3C9U9|A0A2G3C9U9_CAPCH (60S ribosomal protein L2, mitochondrial OS=Capsicum chinense OX=80379 GN=BC332_16734 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.3e-09
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 12  WQETLGPVGGVDHKELKAKRDEGSLLAKLIGEGWNHTSKLRFDLETRAQKASTERKGLPG 71
           WQETLG VG  +H E     D+GSL AK IGEG    +      +  A +A  ER+   G
Sbjct: 107 WQETLGIVGASEHNESNPNTDQGSLPAKPIGEGMKDGT-----CKGNAHEALAERE---G 166

Query: 72  RMPMGAKFFLKVRADSKTWDFDL 95
           RMPMGA FF K RADS+T D  L
Sbjct: 167 RMPMGAAFFEKARADSETSDLGL 181

[Close]
BLAST of CsGy1G030580 vs. TrEMBL
Match: tr|A0A078K1A3|A0A078K1A3_BRANA (BnaUnng04520D protein (Fragment) OS=Brassica napus OX=3708 GN=BnaUnng04520D PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 48/123 (39.02%), Postives = 55/123 (44.72%), Query Frame = 0 

Query: 13  QETLGPVGGVDHKELKAKRDEGSLLAKLIGEGWNHTSKLR----------FDL--ETRA- 72
           Q+TLG VG   H + K K D+GSL AK IGE       LR           DL  E R+ 
Sbjct: 143 QDTLGLVGAAGHNKSKPKTDQGSLPAKPIGERAKQLKALRGLRAKDGACKVDLTREERSN 202

Query: 73  ----------------------------QKASTERKGLPGRMPMGAKFFLKVRADSKTWD 95
                                        +A  ER+GLPGRMPMGA FF K RADS+TWD
Sbjct: 203 GKAIRPFGSSRSIAHIQISYLIGERGNTHEAPAEREGLPGRMPMGAGFFEKARADSETWD 262

The following BLAST results are available for this feature:
BLAST of CsGy1G030580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_025884631.12.5e-1044.04LOW QUALITY PROTEIN: uncharacterized protein LOC101261309, partial [Solanum lyco... [more]
OVA06704.13.3e-1037.01Ribosomal protein L2 [Macleaya cordata][more]
PHU04911.13.3e-1050.5760S ribosomal protein L2, mitochondrial [Capsicum chinense][more]
XP_023521202.11.2e-0941.59LOW QUALITY PROTEIN: uncharacterized protein LOC111784913 [Cucurbita pepo subsp.... [more]
NP_178797.24.7e-0939.84Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] >AEC06100.1 Nu... [more]
BLAST of CsGy1G030580 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07715.18.6e-1339.84Nucleic acid-binding, OB-fold-like protein[more]
BLAST of CsGy1G030580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G030580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2G3BEJ0|A0A2G3BEJ0_CAPCH2.2e-1050.5760S ribosomal protein L2, mitochondrial OS=Capsicum chinense OX=80379 GN=BC332_2... [more]
tr|A0A200Q8E8|A0A200Q8E8_9MAGN2.2e-1037.01Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=4 SV=1[more]
tr|F4IMC7|F4IMC7_ARATH3.1e-0939.84Nucleic acid-binding, OB-fold-like protein OS=Arabidopsis thaliana OX=3702 GN=At... [more]
tr|A0A2G3C9U9|A0A2G3C9U9_CAPCH5.3e-0949.4060S ribosomal protein L2, mitochondrial OS=Capsicum chinense OX=80379 GN=BC332_1... [more]
tr|A0A078K1A3|A0A078K1A3_BRANA2.0e-0839.02BnaUnng04520D protein (Fragment) OS=Brassica napus OX=3708 GN=BnaUnng04520D PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G030580.1CsGy1G030580.1mRNA