CsGy1G028290 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G028290
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	heat shock protein%2C putative (DUF789)
Location	Chr1 : 26506445 .. 26507136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGAATTCCGTTGCAGTTTGGGGGAATCAAAGGTGAAGACTGGTTTTATATTCCGGTAAGGGGCAAAGAATTATAATCACCAAAACCCGTCAAGGAATCCTACCAAGACCGATGAAATCGAGAGCCCATTGAGTAAAGTTGATTCTTGGAACACACAAGGCCTTCAGTTCCAGCACAGTACTTCTTTGAGGTCAATGCTTAGAATCAAAGAAAGTTGATTACGTACAACCTTGAATGGTTCCGTTTCTTGTGGCCCTTTAATGGTCTGCATGGCCTTTTCTGCATCTACAAGTCTTTGACCTCTAAGTAAATAATCCCGTCTGAGAGTTATTTGTTTCTGTTTTTCTTGGGAAATCTTAATTTTTGACGATGATATTTTCTTTGTTTCCAGAGAACTATGAGGGATAGGAGGACTTGTGATATCGAGTTTCAACTTTATTTCATTCTGCATGATCTGTGGGAATCTTTCAAGGAGTGGAGTGCATATGGCGCTGGAGTTCCTTTGGTACTCATGAAGGTGACTGTTGTGTTCAATATTACGTTCCATATTTGTCTGGTATCCAAATATATGGGGAAGCTGCTACATTGACATCAGATTCTCACGCCATGCAGGTACTTGACCTTCGAGTGGAATATGTTAACCCTCATGAGTATGAATTCTTTTTGTATGTGGATTTCTGTGCGTGA

mRNA sequence

ATGTTGGGAATTCCGTTGCAGTTTGGGGGAATCAAAGGTGAAGACTGGTTTTATATTCCGAGAACTATGAGGGATAGGAGGACTTGTGATATCGAGTTTCAACTTTATTTCATTCTGCATGATCTGTGGGAATCTTTCAAGGAGTGGAGTGCATATGGCGCTGGAGTTCCTTTGGTACTCATGAAGGTACTTGACCTTCGAGTGGAATATGTTAACCCTCATGAGTATGAATTCTTTTTGTATGTGGATTTCTGTGCGTGA

Coding sequence (CDS)

ATGTTGGGAATTCCGTTGCAGTTTGGGGGAATCAAAGGTGAAGACTGGTTTTATATTCCGAGAACTATGAGGGATAGGAGGACTTGTGATATCGAGTTTCAACTTTATTTCATTCTGCATGATCTGTGGGAATCTTTCAAGGAGTGGAGTGCATATGGCGCTGGAGTTCCTTTGGTACTCATGAAGGTACTTGACCTTCGAGTGGAATATGTTAACCCTCATGAGTATGAATTCTTTTTGTATGTGGATTTCTGTGCGTGA

Protein sequence

MLGIPLQFGGIKGEDWFYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVLMKVLDLRVEYVNPHEYEFFLYVDFCA

Homology

[Close]

BLAST of CsGy1G028290 vs. NCBI nr
Match: XP_008453426.1 (PREDICTED: uncharacterized protein LOC103494138 isoform X1 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 53/126 (42.06%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FYIP                                        
Sbjct: 1   MLGTALQFGGIKGEDRFYIPVRARKNYNQQKPSRRPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. NCBI nr
Match: XP_008453427.1 (PREDICTED: uncharacterized protein LOC103494138 isoform X2 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 53/126 (42.06%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FYIP                                        
Sbjct: 1   MLGTALQFGGIKGEDRFYIPVRARKNYNQQKPSRRPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. NCBI nr
Match: XP_008453429.1 (PREDICTED: uncharacterized protein LOC103494138 isoform X4 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 53/126 (42.06%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FYIP                                        
Sbjct: 1   MLGTALQFGGIKGEDRFYIPVRARKNYNQQKPSRRPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. NCBI nr
Match: XP_016901407.1 (PREDICTED: uncharacterized protein LOC103494138 isoform X3 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 53/126 (42.06%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FYIP                                        
Sbjct: 1   MLGTALQFGGIKGEDRFYIPVRARKNYNQQKPSRRPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. NCBI nr
Match: XP_004137321.1 (PREDICTED: uncharacterized protein LOC101215266 [Cucumis sativus] >KGN63839.1 hypothetical protein Csa_1G024240 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 52/126 (41.27%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FY+P                                        
Sbjct: 1   MLGTTLQFGGIKGEDRFYVPVRARKNYNQQKPSRNPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. TAIR10
Match: AT4G16100.1 (Protein of unknown function (DUF789))

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-10
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 27  RTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVLMKVLDLRVEYVNPHEYEFFLYVD 84
           RT + E++ YF+L+DLW+SF+EWSAYG GVPL L+  +D  V+Y  P+     LY D
Sbjct: 114 RTREPEYRPYFLLNDLWDSFEEWSAYGVGVPL-LLNGIDSVVQYYVPYLSGIQLYED 169

[Close]

BLAST of CsGy1G028290 vs. TAIR10
Match: AT5G49220.1 (Protein of unknown function (DUF789))

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-09
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 21  RTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL----MKVLDLRVEYVNPHEY 80
           R+  + +T + +   YF+L DLWESF EWSAYGAGVPL +    M   D  V+Y  P+  
Sbjct: 128 RSRWELKTRESDCHTYFVLEDLWESFAEWSAYGAGVPLEMHPLEMHGNDSTVQYYVPYLS 187

Query: 81  EFFLYVD 84
              LYVD
Sbjct: 188 GIQLYVD 194

[Close]

BLAST of CsGy1G028290 vs. TAIR10
Match: AT1G15030.1 (Protein of unknown function (DUF789))

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-09
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 18  YIPRT-MRDRRTCDIEFQL-YFILHDLWESFKEWSAYGAGVPLVLMKVLDLRVEYVNPHE 77
           Y+ +T +R+R   D+E Q+ YF+L D+WESF EWSAYG GVPL L    D   +Y  P  
Sbjct: 64  YLSKTIVRERGGSDVESQVPYFLLGDVWESFAEWSAYGIGVPLTLNNNKDRVFQYYVPSL 123

Query: 78  YEFFLYVD 84
               +Y D
Sbjct: 124 SGIQVYAD 131

[Close]

BLAST of CsGy1G028290 vs. TAIR10
Match: AT2G01260.1 (Protein of unknown function (DUF789))

HSP 1 Score: 56.6 bits (135), Expect = 8.7e-09
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 23  MRDRRTCDIEFQL--YFILHDLWESFKEWSAYGAGVPLVLMKVLDLRVEYVNP 74
           +R+RR  D   +L  YF+L D+W+SF EWSAYG GVPLVL    D  ++Y  P
Sbjct: 87  LRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGVPLVLNNNKDRVIQYYVP 139

[Close]

BLAST of CsGy1G028290 vs. TAIR10
Match: AT4G28150.1 (Protein of unknown function (DUF789))

HSP 1 Score: 44.7 bits (104), Expect = 3.4e-05
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 36 YFILHDLWESFKEWSAYGAGVPLVLMKVLDLRVEYVNPH 75
          YF L D W+ F EWSAYGAGVP+V  +  +  V+Y  P+
Sbjct: 48 YFRLGDFWDCFDEWSAYGAGVPIV-SETGETLVQYYVPY 85

[Close]

BLAST of CsGy1G028290 vs. TrEMBL
Match: tr|A0A1S3BXD9|A0A1S3BXD9_CUCME (uncharacterized protein LOC103494138 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494138 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-14
Identity = 53/126 (42.06%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FYIP                                        
Sbjct: 1   MLGTALQFGGIKGEDRFYIPVRARKNYNQQKPSRRPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. TrEMBL
Match: tr|A0A1S3BX10|A0A1S3BX10_CUCME (uncharacterized protein LOC103494138 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494138 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-14
Identity = 53/126 (42.06%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FYIP                                        
Sbjct: 1   MLGTALQFGGIKGEDRFYIPVRARKNYNQQKPSRRPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. TrEMBL
Match: tr|A0A1S4DZI3|A0A1S4DZI3_CUCME (uncharacterized protein LOC103494138 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494138 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-14
Identity = 53/126 (42.06%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FYIP                                        
Sbjct: 1   MLGTALQFGGIKGEDRFYIPVRARKNYNQQKPSRRPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. TrEMBL
Match: tr|A0A1S3BVN3|A0A1S3BVN3_CUCME (uncharacterized protein LOC103494138 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103494138 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-14
Identity = 53/126 (42.06%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FYIP                                        
Sbjct: 1   MLGTALQFGGIKGEDRFYIPVRARKNYNQQKPSRRPTKTDETESLSSKVVGCTTKPCEEL 60

[Close]

BLAST of CsGy1G028290 vs. TrEMBL
Match: tr|A0A0A0LS49|A0A0A0LS49_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024240 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-14
Identity = 52/126 (41.27%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 1   MLGIPLQFGGIKGEDWFYIP---------------------------------------- 60
           MLG  LQFGGIKGED FY+P                                        
Sbjct: 1   MLGTTLQFGGIKGEDRFYVPVRARKNYNQQKPSRNPTKTDETESLSSKVVGCTTKPCEEL 60

The following BLAST results are available for this feature:

BLAST of CsGy1G028290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453426.1	9.6e-14	42.06	PREDICTED: uncharacterized protein LOC103494138 isoform X1 [Cucumis melo]	[more]
XP_008453427.1	9.6e-14	42.06	PREDICTED: uncharacterized protein LOC103494138 isoform X2 [Cucumis melo]	[more]
XP_008453429.1	9.6e-14	42.06	PREDICTED: uncharacterized protein LOC103494138 isoform X4 [Cucumis melo]	[more]
XP_016901407.1	9.6e-14	42.06	PREDICTED: uncharacterized protein LOC103494138 isoform X3 [Cucumis melo]	[more]
XP_004137321.1	1.3e-13	41.27	PREDICTED: uncharacterized protein LOC101215266 [Cucumis sativus] >KGN63839.1 hy...	[more]

BLAST of CsGy1G028290 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16100.1	7.9e-10	50.88	Protein of unknown function (DUF789)	[more]
AT5G49220.1	1.3e-09	46.27	Protein of unknown function (DUF789)	[more]
AT1G15030.1	2.3e-09	45.59	Protein of unknown function (DUF789)	[more]
AT2G01260.1	8.7e-09	50.94	Protein of unknown function (DUF789)	[more]
AT4G28150.1	3.4e-05	51.28	Protein of unknown function (DUF789)	[more]

BLAST of CsGy1G028290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G028290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BXD9\|A0A1S3BXD9_CUCME	6.4e-14	42.06	uncharacterized protein LOC103494138 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BX10\|A0A1S3BX10_CUCME	6.4e-14	42.06	uncharacterized protein LOC103494138 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DZI3\|A0A1S4DZI3_CUCME	6.4e-14	42.06	uncharacterized protein LOC103494138 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BVN3\|A0A1S3BVN3_CUCME	6.4e-14	42.06	uncharacterized protein LOC103494138 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LS49\|A0A0A0LS49_CUCSA	8.3e-14	41.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024240 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008507	DUF789

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G028290.1	CsGy1G028290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008507	Protein of unknown function DUF789	PFAM	PF05623	DUF789	coord: 30..69 e-value: 1.1E-9 score: 38.3
None	No IPR available	PANTHER	PTHR31343	FAMILY NOT NAMED	coord: 22..82
None	No IPR available	PANTHER	PTHR31343:SF5	SUBFAMILY NOT NAMED	coord: 22..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G028290	CSPI01G29080	Wild cucumber (PI 183967)	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G028290	Silver-seed gourd	carcgybB0101
CsGy1G028290	Silver-seed gourd	carcgybB0505
CsGy1G028290	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G028290	Watermelon (97103) v2	cgybwmbB041
CsGy1G028290	Wax gourd	cgybwgoB091
CsGy1G028290	Cucurbita maxima (Rimu)	cgybcmaB005
CsGy1G028290	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G028290	Cucurbita moschata (Rifu)	cgybcmoB006
CsGy1G028290	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G028290	Cucurbita pepo (Zucchini)	cgybcpeB054
CsGy1G028290	Cucurbita pepo (Zucchini)	cgybcpeB125
CsGy1G028290	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G028290	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G028290	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G028290	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G028290	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G028290	Watermelon (97103) v1	cgybwmB022