CsGy1G028130 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G028130
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionBeta-galactosidase
LocationChr1 : 26343923 .. 26348565 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAATACGCTTACTTTTATCTGAATCAGTTTTAATATTTGGTAAACTATGGTGTGATAATAAAGTTACTCTTCAAATAAAGTCAGTTGGTTCATGCATGTGTTAGTCAAGTCGTCCAACCCCATTTCTACTCTAAACCCTAAACCCTAAACCCTAAACCCACGTTGGAGAATTTTCTTAATTCTCTTTCTAATATTTTATTAATAAACAAAGTATTGTTCGAAGTCAGTTCAGATTATTTTGAAAGAAAAAGAAAAAATTGAAACAGAACTTTTGTTTGTTAAGATTTTAAGTTCACACCTATTCATAAGGCTCGCTCACTCCTTCTAACTATATAAACACCCATAAATTCATCCAAAATTTCAATACCCAAATAGCCATGGTTTCATCTTCAACCTTCTTATTCTTCTTCATTCTTCTCTTAAATTTCTTCCTTTTTATCACTTCCACTCAAGTTTCCTACACTAACAGAGGAATCACCATTGATGGCCAACCCAAGATTTTCCTCTCTGGTTCAATCCACTACCCACGTAGCACTCCCCAAGTAAAAACATTTTTTTCTATATTCCTTCCTCATCTTAATCCCATTCCCAAAAACGGGGTTCATTTTGATTCCTTTGTTTTTTTGTTTTTTTCTTTTGTAGATGTGGCCTGATTTGATAAAAAAGTCTAAAGAAGGTGGACTAGACACCATTGAAACTTACGTTTTTTGGAATGCTCATGAACCCGTTCGTCGTCAATACGATTTCTCTGCTAATCTTGATCTTGTTAGATTCATTAAGACCATTCAAAATGAAGGTCTTTACGCTGTTCTTCGTATCGGTCCATACGTTTGTGCCGAGTGGAATTACGGGTATATGAAGTCTTGGTTGCTCTATTTTTTTAATATTTTTGTTTAGAGAAGTTAATTCTCATTTCTTGAACGGGTTTTATAGAGGATTTCCGGTTTGGTTGCATAACCTTCCTGGAATTGAAGAACTAAGAACAACCAATCCTGTGTTCATGGTAACTTTCTGTTTATCTTAATTTTATGAATGTTTTGTACACTGTTTCTTACTTTGTTTGTTGCTTTTTGAATTTGTAAAACAGAATGAGATGCAAAATTTTACTACATTGATTGTGGATATGATGAAACAAGAGAATCTTTTCGCATCGCAAGGGGGGCCGATAATTCTAGCTCAAATAGAGAATGAATACGGAAACGTAATGACATCATACGGCGATGCTGGAAAAGCTTACGTGAATTGGTGTGCAAACATGGCGGATTCGCAGAATGTTGGAGTGCCATGGATTATGTGTCAGCAAGACGACGCTCCCGAGCCGACGATCAATACCTGCAATGGTTGGTACTGTGATCAATTCACTCCCAACAATGCTAAAAGTCCGAAAATGTGGACGGAGAATTGGACTGGATGGTTCAAGAGCTGGGGTGGAAGGGACCCGGTTAGAACCCCCGAAGATTTGGCTTTCTCCGTCGCTAGATTCTTTCAACTCGGCGGTACTTTCCAAAACTACTACATGGTTTGCACTCACTCTGATTCTTTACTTAATTGTTTTTGCTCCAGCGGGTCTGTGTAAGATTTGTTTCTTTTTCTCAGTACCACGGCGGAACGAACTTCGATCGGATGGCGGGTGGTCCGTACATCACCACGACTTACGATTACAACGCTCCATTAGACGAATATGGGAATTTGAATCAACCCAAATTCGGTCATTTGAAGCAACTTCATGCTGCATTGAAGTCGATAGAAAAGGCCTTGGTTTCCGGCAATGTCACAACCACCGATTTGACCGACTCTGTTTCAGTAAGCACTTTTTTTTTTTTCTTTTTGAAAATTTCCTCAGTTTCTTCAAAACAGAACTTAGTTTTAACTCAAGATTTTCTATGATTTAGATCACTGAATACGCAACGGACAAAGGGAAGAGTTGTTTCTTCAGCAATATAAATGAAACGACCGACGCGTTGGTGAATTATCTCGGTAAAGACTTCAACGTTCCGGCTTGGTCCGTCAGCATTCTTCCTGATTGTCAAGAGGAAGTTTACAATACAGCAAAGGTAAACACACAGACCTCTGTCATGGTGAAGAAAGAAAACAAGGCCGAGAACGAACCGGAGGTTTTGGAATGGATGTGGCGACCGGAGAATATCGACAACACCGCTAGATTAGGTAAAGGACAAGTCACTGCAAATAAGCTTATTGATCAGAAAGATGCTGCCAATGATGCTAGTGATTATCTTTGGTACATGACAAGGTAAATTCCTTTGAAATTTAACAGTAATTTTTTCATTGATTCAACTTCTACCCACCCATTACTCATTTGTTGATTTTGATTGTGTTTTTGTTCAATTTTTCTAGTGTTAATTTGAAGAAAAAGGATCCAATTTGGAGCAATGAAATGACTTTGCGTATCAATGTAAGTGGACATATCGTCCATGCCTTTGTCAACGGAGAACACATTGGTTCTCAATGGGCTTCTTATGACGTATACAACTACATCTTTGAGCAAGAAGTGAAATTGAAGCCAGGAAAGAACATAATCTCTCTACTCAGCGCCACCATCGGACTCAAGAACTACGGAGCTCAATATGATCTGATCCAATCCGGAATCGTTGGTCCGGTTCAACTAATCGGTCGCCACGGCGACGAGACGATCATAAAGGATCTCTCCAATCACAAATGGTCATACGAGGTTGGATTACACGGTTTCGAAAACCGCCTATTCAGCCCAGAGTCCCGATTCGCCACGAAATGGCAATCAGGTAATTTGCCAGTGAATAGAATGATGACATGGTACAAGACTACCTTCAAACCACCATTGGGGACGGACCCTGTCACCCTAGACTTGCAAGGGTTGGGCAAAGGAATGGCTTGGGTGAACGGACATAGTATTGGTCGATACTGGCCGAGCTTCATAGCTGAGGACGGATGCAGTGACGAGCCATGTGACTATCGAGGCTCCTACACCAACACCAAATGCGTAAGGGACTGTGGCAAACCGACACAACAGTGGTACCATGTTCCCAGATCGTGGCTCAACGAAGGCGACAACACATTAGTTTTGTTCGAGGAATTCGGAGGTAACCCGTCATTGGTGAACTTCAAAACTATTGCAATGGAGAAGGCTTGTGGTCATGCTTATGAGAAGAAGAGCTTGGAGTTGTCTTGTCAAGGAAAGGAGATTACAGGGATTAAATTTGCAAGTTTTGGTGATCCAACGGGTAGTTGTGGGAATTTCTCAAAGGGAAGTTGTGAAGGGAAAAATGATGCAATGAAAATTGTTGAAGATTTATGTATTGGCAAAGAATCTTGTGTTATTGATATCTCTGAAGATACCTTTGGAGCTACTAATTGTGCTCTTGGTGTTGTCAAGAGGCTTGCTGTTGAGGCTGTCTGTTAGAATAACTTACTTCTTCTAATTTTTAGGGTTTCATTAGGGCATATTTTTTTTAAAAAAAAAAAGAGATGAGAATTTCGTAGTGTTCTTTCTTTGTTAATCAATAAAGTAATGAGTTTAGTTTTGTTCCAAATGTAAGGAACTTTATTTTATAAAAATACAAACTTGAATTTGGGAACAAAATATATGTGATTCTTTTTCTTTTTTTTTGTGGGTAATATAATGTAGTGTTTGTGATATGGAGAATATAATCAAGTTAAACAAGCTTTTAACTTGATTTTTGTAATGTGGAAGAATATGCTATGTCTCTCCTTTTCTAGTTGAATTGACATTATTGGATGTATCTTGAATTGTGTAAAGACATTTGGGTTTCTGTCATGTTTTTACATCAAAGAATTGTCACGTAACTTCTGGTTAGACTTTAAAATGTAGCCTCATCTGTTCATACTCACTCCAACATTAAAAAAAGTTTTAAAAAAACAAACCAAATAAATTAAACAGAAGGAAAAGATTAGATCTGATAAATTAAACCAAAAAAAAAAAGAAATGGAGAATTTAAATAATAGTAAAGAAGGAAAAATCCAAAAAAAATTTAGCCTTTGCTCTATTTTAATTATTTTCTCATAAACAAGAAAGTGGGCAAAAAATAATGGTCACCCCCACTAGTCATTTACGTATACAATAATCAAAAACCAAACTATTAGCCGTGTCTAACTTTTCTATATACTTTGCTGCTGCTATGGCGTTTGCCTTCTTCTTCTTCTTCCTCTTCCTCTTCCTCTATTTCTTTTTTTTTATTATTATTATTTTTTATTTTCTTTCTTTTACCTAAATTGCAAGAATTCCAGTCGAAAAAATCCCTCTGTTATAAGGCGATTCCGATACTACCGTTTCCGTTCCCGATCTCGCCTCCGATCTACATCGTTCCTTCTTCTCATCCTTCATTATTTGACTCGACCGGCATTCCGTACTACAAAACGCCATTTCCCTCTGAAAATCCATTTTTTTCCATAACCCATTAGAAATTTTGATCTAATAAATCGAATTAAGGAAAAAAGTTCTAATATTGGTAATAATTGGAAAATTGGGGATTTGGGTTTTTTTAGTGTTTTTTTTTTTTTTTTTATAAATTTTTACCTGTACATGTAAATGTCTTTGCCTTCTAGATTTCTATCACATAAATGACAAGATCGGAGGAAATCAGGGGTCCGACGCGGCGGAGTTATGTCGGATGGTACGGGGGTAG

mRNA sequence

GTTGAATACGCTTACTTTTATCTGAATCAGTTTTAATATTTGGTAAACTATGGTGTGATAATAAAGTTACTCTTCAAATAAAGTCAGTTGGTTCATGCATGTGTTAGTCAAGTCGTCCAACCCCATTTCTACTCTAAACCCTAAACCCTAAACCCTAAACCCACGTTGGAGAATTTTCTTAATTCTCTTTCTAATATTTTATTAATAAACAAAGTATTGTTCGAAGTCAGTTCAGATTATTTTGAAAGAAAAAGAAAAAATTGAAACAGAACTTTTGTTTGTTAAGATTTTAAGTTCACACCTATTCATAAGGCTCGCTCACTCCTTCTAACTATATAAACACCCATAAATTCATCCAAAATTTCAATACCCAAATAGCCATGGTTTCATCTTCAACCTTCTTATTCTTCTTCATTCTTCTCTTAAATTTCTTCCTTTTTATCACTTCCACTCAAGTTTCCTACACTAACAGAGGAATCACCATTGATGGCCAACCCAAGATTTTCCTCTCTGGTTCAATCCACTACCCACGTAGCACTCCCCAAAGGATTTCCGGTTTGGTTGCATAACCTTCCTGGAATTGAAGAACTAAGAACAACCAATCCTGTGTTCATGATCACTGAATACGCAACGGACAAAGGGAAGAATTTCTATCACATAAATGACAAGATCGGAGGAAATCAGGGGTCCGACGCGGCGGAGTTATGTCGGATGGTACGGGGGTAG

Coding sequence (CDS)

ATGGCCAACCCAAGATTTTCCTCTCTGGTTCAATCCACTACCCACGTAGCACTCCCCAAAGGATTTCCGGTTTGGTTGCATAACCTTCCTGGAATTGAAGAACTAAGAACAACCAATCCTGTGTTCATGATCACTGAATACGCAACGGACAAAGGGAAGAATTTCTATCACATAAATGACAAGATCGGAGGAAATCAGGGGTCCGACGCGGCGGAGTTATGTCGGATGGTACGGGGGTAG

Protein sequence

MANPRFSSLVQSTTHVALPKGFPVWLHNLPGIEELRTTNPVFMITEYATDKGKNFYHINDKIGGNQGSDAAELCRMVRG
Homology
[Close]
BLAST of CsGy1G028130 vs. NCBI nr
Match: XP_008450952.1 (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 15 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 9.8e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 21  GFPVWLHNLPGIEELRTTNPVFM 44
           GFPVWLHNLPGIEELRTTNPVFM
Sbjct: 125 GFPVWLHNLPGIEELRTTNPVFM 147

[Close]
BLAST of CsGy1G028130 vs. NCBI nr
Match: XP_011660030.1 (PREDICTED: beta-galactosidase 15 [Cucumis sativus] >KGN66324.1 hypothetical protein Csa_1G597710 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 9.8e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 21 GFPVWLHNLPGIEELRTTNPVFM 44
          GFPVWLHNLPGIEELRTTNPVFM
Sbjct: 71 GFPVWLHNLPGIEELRTTNPVFM 93

[Close]
BLAST of CsGy1G028130 vs. TAIR10
Match: AT1G31740.1 (beta-galactosidase 15)

HSP 1 Score: 40.8 bits (94), Expect = 4.5e-04
Identity = 17/23 (73.91%), Postives = 19/23 (82.61%), Query Frame = 0 

Query: 21  GFPVWLHNLPGIEELRTTNPVFM 44
           GFPVWLHN+PG+ E RTTN  FM
Sbjct: 145 GFPVWLHNMPGM-EFRTTNTAFM 166

[Close]
BLAST of CsGy1G028130 vs. TrEMBL
Match: tr|A0A1S3BQE1|A0A1S3BQE1_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492389 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.5e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 21  GFPVWLHNLPGIEELRTTNPVFM 44
           GFPVWLHNLPGIEELRTTNPVFM
Sbjct: 125 GFPVWLHNLPGIEELRTTNPVFM 147

[Close]
BLAST of CsGy1G028130 vs. TrEMBL
Match: tr|A0A0A0LZ45|A0A0A0LZ45_CUCSA (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G597710 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.5e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 21 GFPVWLHNLPGIEELRTTNPVFM 44
          GFPVWLHNLPGIEELRTTNPVFM
Sbjct: 71 GFPVWLHNLPGIEELRTTNPVFM 93

[Close]
BLAST of CsGy1G028130 vs. TrEMBL
Match: tr|V4UP43|V4UP43_9ROSI (Beta-galactosidase OS=Citrus clementina OX=85681 GN=CICLE_v10010454mg PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.4e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 21  GFPVWLHNLPGIEELRTTNPVFM 44
           GFPVWLHN+PGIEELRTTN VFM
Sbjct: 129 GFPVWLHNMPGIEELRTTNKVFM 151

[Close]
BLAST of CsGy1G028130 vs. TrEMBL
Match: tr|A0A2H5NBQ9|A0A2H5NBQ9_CITUN (Beta-galactosidase OS=Citrus unshiu OX=55188 GN=CUMW_030460 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.4e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 21  GFPVWLHNLPGIEELRTTNPVFM 44
           GFPVWLHN+PGIEELRTTN VFM
Sbjct: 129 GFPVWLHNMPGIEELRTTNKVFM 151

[Close]
BLAST of CsGy1G028130 vs. TrEMBL
Match: tr|A0A2H5ND70|A0A2H5ND70_CITUN (Beta-galactosidase OS=Citrus unshiu OX=55188 GN=CUMW_030460 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.4e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 21  GFPVWLHNLPGIEELRTTNPVFM 44
           GFPVWLHN+PGIEELRTTN VFM
Sbjct: 129 GFPVWLHNMPGIEELRTTNKVFM 151

The following BLAST results are available for this feature:
BLAST of CsGy1G028130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450952.19.8e-05100.00PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 15 [Cucumis melo][more]
XP_011660030.19.8e-05100.00PREDICTED: beta-galactosidase 15 [Cucumis sativus] >KGN66324.1 hypothetical prot... [more]
BLAST of CsGy1G028130 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31740.14.5e-0473.91beta-galactosidase 15[more]
BLAST of CsGy1G028130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G028130 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQE1|A0A1S3BQE1_CUCME6.5e-05100.00Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492389 PE=3 SV=1[more]
tr|A0A0A0LZ45|A0A0A0LZ45_CUCSA6.5e-05100.00Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G597710 PE=3 SV=1[more]
tr|V4UP43|V4UP43_9ROSI9.4e-0491.30Beta-galactosidase OS=Citrus clementina OX=85681 GN=CICLE_v10010454mg PE=3 SV=1[more]
tr|A0A2H5NBQ9|A0A2H5NBQ9_CITUN9.4e-0491.30Beta-galactosidase OS=Citrus unshiu OX=55188 GN=CUMW_030460 PE=3 SV=1[more]
tr|A0A2H5ND70|A0A2H5ND70_CITUN9.4e-0491.30Beta-galactosidase OS=Citrus unshiu OX=55188 GN=CUMW_030460 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G028130.1CsGy1G028130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G028130Cucurbita maxima (Rimu)cgybcmaB005
CsGy1G028130Cucurbita maxima (Rimu)cgybcmaB027
CsGy1G028130Cucurbita moschata (Rifu)cgybcmoB006
CsGy1G028130Cucurbita moschata (Rifu)cgybcmoB027
CsGy1G028130Cucurbita pepo (Zucchini)cgybcpeB054
CsGy1G028130Cucurbita pepo (Zucchini)cgybcpeB125
CsGy1G028130Cucumber (Chinese Long) v2cgybcuB002
CsGy1G028130Bottle gourd (USVL1VR-Ls)cgyblsiB055
CsGy1G028130Melon (DHL92) v3.5.1cgybmeB038
CsGy1G028130Melon (DHL92) v3.6.1cgybmedB032
CsGy1G028130Watermelon (Charleston Gray)cgybwcgB043
CsGy1G028130Watermelon (97103) v1cgybwmB022
CsGy1G028130Wild cucumber (PI 183967)cgybcpiB002
CsGy1G028130Silver-seed gourdcarcgybB0101
CsGy1G028130Cucumber (Chinese Long) v3cgybcucB001
CsGy1G028130Watermelon (97103) v2cgybwmbB041
CsGy1G028130Wax gourdcgybwgoB091