CsGy1G026400 (gene) Cucumber (Gy14) v2

NameCsGy1G026400
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionSuperoxide dismutase [Cu-Zn]
LocationChr1 : 24981634 .. 24984716 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAACTACACGGACCAACACATTAATTTCACTATTGAAGTATTAACACATGGAGTCCTCTATATAAATTTCCAAAAGCCCTAAGCTTTCTTCATTTCTAGACTCTTCCTTCCATTCAATCTCACCTCTGCCTTCTCTTTCTTCTGTCCAAGGGGTGTTCTGAGGTCAGCTCTCTCTTTCCCATCATTTTTTTTGCCTTTCATATCCCTTGTTTTTCTTCAATTTGATCTGGGTTTAGCTGTTTTAGCTCCTTCTAATTAATTATGTTTTTCTCGAAATTTTACATGTATTCAGCTTAAATTATTGGTTACATGCTTCCCGATGATGTGATTCCGCCTTCTATTAGTGGGATTTTGTACTGTTAATTGCGCATCATGACTGTGTTGGTTGTTTTTGTTCATTATTCCATGTCGTTGACTGATTTTAGATTGTATTGAACTTGTGGGTACTCTTAATAATCGGTCTAATTTTATACCCACCTTACAGAATTTTGAGCTTGGTCTTGTTTTTTCGTTTTTTTCTTTGAAGTGATGTGCTTTTTTTGTTGAGCTTGTTTTCTTGTGTGTTCTCTTGTATATATTCTTTCATTTCTGTCAATGAAAGAGGGTTTTTTTTTGTAAAAATACATTGCTCGACTAATTATTTTGGTCCTTTCTGCACATGAGTTGAAGTTATGAATTGCCAAAATGATGTTTCGTGTGAAGGATATCGTAATTGGGTGGTGTCGTATTCTTAATTCATTGGTTTCTTTTGTTGATCTCATGTTTTTGTTGGTTTTATTCTAATTATGTTGAAGTGTGTTAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTAATCTGGTTAATGGTTTCGTGTAGACGGTCTATGTTCATTTCTTTTCTATCTTGTACTTAGTCCAAAGAGTTTTCAGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGTATCTTTTTAGACATTTAAGATCTTTTATTTGGTCTTTCTATTTTGAAGGAACGTAGATGTTTGTTAAAAAATTGAATATAGATCCTTTCGTTTATCTCAACATTAAAATTTCTCAAAATATTTACAGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGTATGTTTCTCATTCTTTAACAATTCATTGAATAAGTTTTATTCTTGTCGTGTTGTGCTCCATTTCCTTTTTTGTATATCTTTTACATTATAATGGCTTAAGGTATATTTGTAAAAGTATGCTATTTTGTGTTGTTTTAGATTTCTCCTTTATATTTAGCTAATTTGATGTTGGATTTCATACCTTATTCAAACATTGTTCTATTGATATACTGGTTAAATGCTAATACAATATTTTGTACAGGCAAGGCTAACTTCACCATTACTGACTGCCAGGTTTGTCCCTATTTAATTCATCGTGTTAGGGCATCCAATTGTAAGGGTCTTACTCCTTTTTCTGAGCTTTAGATCATATATGCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTAATTTCTCTAACCATTTGCTACTTGATAGTTCTTTGAGCTTTTACAAGTAGTATATTTCTGGGCTATATCTACCATATTCAAACCCAAAAGAAAAGTACTATCAATTAGCTAGGCTGTACAATAGAGAAGTGACTGTTTTTGGAATATTTTGTAGTGAGAATCTCCCTTGTTTTGCATTTTTTCTTTACATCTATAATGCTTATGAACGTGCTTGTAGAAAGGTAGTATGGCTAGAGTAGTTATGTAACAGAGTTCAAATGATTAAATGGGGCAATTAGAACACACAAAACATAAAAGATGATTGGTTGGTTGACGATTATTGATAGATAGTACGGAGGATATCAGAACCAACTTTAAGAGAGCAATAAAAAGAATACTGCATTTAAATGCTTTCTTGAGGTTGTATTCCCTTTATGGAGATATTGGGTGTTCCATGCTTTCTGATATTTGGCATAAGGTCGAGGTGATAGTTTGTGAATATTAATACTTTCATACATATTCACTCTTCGGCTGTTGGGTTTGGAAACTTGAAAAAGCAATTATCAATATTTAAAAGGGGGAAATAACATGGTAGGGATCAGATATAGGACTGACAACCATGTTCAACTATCACTGCCGTCTAAAATGCTTGAGCTAATATGATAGCTAATGGGAAGGATAAGTTTAAGTATTATTCACTCTAAACTTTCAAGTTTGAAGTAATACTATGTAGCTTCTGAAAAAAAATTATGTCATCCAGAAGAGCTTTGTGAGAAAGCTTTTGTAGAGTGATCTATTGACTCAGGTGCACCCAAATGTGCTTTTAAGATTGCAAAGTATTAATTATTCTTAATATTAAACACATTTTATTATTGTATTTTTGCTCAAAGTACCCTAAAGCATTCTGAAATTGTACCTTTTTATGCATATTCTTATCAGTGGTCATTTTTGACATACAGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGTATGCGAATTCGGTTCCTAAGAAATATTACTTTTTCTTCCATTCTACAATTCCCTTTTCAAAGTTATCTGCCGTTCTCCATATTTCTTGATTGCATTTGTTGTCGTTTTATTTCCAGGCATTATTGGTCTGCAAGGTTAAAATTTGTTGCCTTCGTTGCCGTTACTGTTGAAGCATTGAACCCAAGTGCTCTCTAGTGCTTCCAGGAATATTCCTAAACTCTCGTGAATGAATAAAAACACATCACTGTACCTTTTCTTCTTTTGTGACGATTAGATCTTTCACTTATCCATACTTGTCTGCTGTTTTATTAATATATTTCTGGAAATTTGGTTTCTTTTTTTTTTTCTTTTT

mRNA sequence

TCAAACTACACGGACCAACACATTAATTTCACTATTGAAGTATTAACACATGGAGTCCTCTATATAAATTTCCAAAAGCCCTAAGCTTTCTTCATTTCTAGACTCTTCCTTCCATTCAATCTCACCTCTGCCTTCTCTTTCTTCTGTCCAAGGGGTGTTCTGAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGCAAGGCTAACTTCACCATTACTGACTGCCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGTCTGCAAGGTTAAAATTTGTTGCCTTCGTTGCCGTTACTGTTGAAGCATTGAACCCAAGTGCTCTCTAGTGCTTCCAGGAATATTCCTAAACTCTCGTGAATGAATAAAAACACATCACTGTACCTTTTCTTCTTTTGTGACGATTAGATCTTTCACTTATCCATACTTGTCTGCTGTTTTATTAATATATTTCTGGAAATTTGGTTTCTTTTTTTTTTTCTTTTT

Coding sequence (CDS)

ATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGCAAGGCTAACTTCACCATTACTGACTGCCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGTCTGCAAGGTTAA

Protein sequence

MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGDPDDLGKGGHELSSSTGNAGARVACGIIGLQG
BLAST of CsGy1G026400 vs. NCBI nr
Match: NP_001267697.1 (superoxide dismutase [Cu-Zn]-like [Cucumis sativus] >XP_011658153.1 PREDICTED: superoxide dismutase [Cu-Zn]-like isoform X1 [Cucumis sativus] >XP_011658519.1 PREDICTED: superoxide dismutase [Cu-Zn]-like isoform X1 [Cucumis sativus] >ACA49507.1 cytosolic superoxide dismutase [Cucumis sativus] >KGN66141.1 hypothetical protein Csa_1G573600 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 5.9e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSSSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 152

BLAST of CsGy1G026400 vs. NCBI nr
Match: XP_008450736.1 (PREDICTED: superoxide dismutase [Cu-Zn] [Cucumis melo] >XP_008450737.1 PREDICTED: superoxide dismutase [Cu-Zn] [Cucumis melo] >ALO62044.1 superoxide dismutase 3 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 4.9e-77
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

BLAST of CsGy1G026400 vs. NCBI nr
Match: AKN08991.1 (superoxide dismutase [Luffa aegyptiaca])

HSP 1 Score: 293.1 bits (749), Expect = 5.4e-76
Identity = 141/152 (92.76%), Postives = 145/152 (95.39%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVK VAVLGSSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTI+DCQIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. NCBI nr
Match: XP_022158885.1 (superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158886.1 superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158887.1 superoxide dismutase [Cu-Zn] [Momordica charantia])

HSP 1 Score: 285.0 bits (728), Expect = 1.5e-73
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLG+S+ VSGTIFF+QEGDGPTTVTGNVSGLK GLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGASDVVSGTIFFSQEGDGPTTVTGNVSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTITDCQIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDCQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. NCBI nr
Match: OMO55314.1 (hypothetical protein COLO4_36053 [Corchorus olitorius])

HSP 1 Score: 284.6 bits (727), Expect = 1.9e-73
Identity = 138/152 (90.79%), Postives = 142/152 (93.42%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAPEDENRHAGDLGNI VG+DG A+F+ TD QIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNITVGDDGTASFSKTDSQIPLTGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. TAIR10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1)

HSP 1 Score: 270.4 bits (690), Expect = 6.8e-73
Identity = 130/152 (85.53%), Postives = 135/152 (88.82%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           M K VAVL SSEGV+GTIFFTQEGDG TTV+G VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNP GK HGAPED NRHAGDLGNI VG+DG A FTITDCQIPL G  SI+GRAVVVH 
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. TAIR10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3)

HSP 1 Score: 205.3 bits (521), Expect = 2.7e-53
Identity = 95/150 (63.33%), Postives = 112/150 (74.67%), Query Frame = 0

Query: 2   VKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL PG HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGD 121
           HFNP  + HG P +E RHAGDLGNI+ G +G A   I D  IPL G  SI+GRAVVVH D
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKGGHELSSSTGNAGARVACGIIGLQ 152
           PDDLGKGGH+LS STGNAG+RV CGIIGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

BLAST of CsGy1G026400 vs. TAIR10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2)

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-43
Identity = 82/121 (67.77%), Postives = 91/121 (75.21%), Query Frame = 0

Query: 30  VTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKQHGAPEDENRHAGDLGNIIVG 89
           V   ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HGAPEDE RHAGDLGNI   
Sbjct: 93  VNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINAN 152

Query: 90  EDGKANFTITDCQIPLCGHESIIGRAVVVHGDPDDLGKGGHELSSSTGNAGARVACGIIG 149
            DG A  TI D QIPL G  S++GRA VVH   DDLGKGGHELS +TGNAG R+ACG+IG
Sbjct: 153 ADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIG 212

Query: 150 L 151
           L
Sbjct: 213 L 213

BLAST of CsGy1G026400 vs. TAIR10
Match: AT1G12520.1 (copper chaperone for SOD1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 40/135 (29.63%), Postives = 64/135 (47.41%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           +V A         + G + F Q       +  N +GL PG H + ++  GD TNG  STG
Sbjct: 160 LVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTG 219

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
             +NP   Q G         GDLG +   ++G+A ++    ++ +     +IGRAVVV+ 
Sbjct: 220 SLYNPFQDQTG-----TEPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYK 279

Query: 121 DPDDLGKGGHELSSS 136
             D+  K G  L+++
Sbjct: 280 TDDN--KSGPGLTAA 284

BLAST of CsGy1G026400 vs. Swiss-Prot
Match: sp|Q07796|SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-75
Identity = 137/152 (90.13%), Postives = 142/152 (93.42%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAP D+NRHAGDLGNI VGEDG A+FTITD QIPL G  S+IGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. Swiss-Prot
Match: sp|P27082|SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 5.8e-74
Identity = 134/152 (88.16%), Postives = 141/152 (92.76%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFFTQ+GD PTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPAGK+HGAPEDE RHAGDLGNI VGEDG A+FT+TD QIPL G +SIIGRAVVVH 
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. Swiss-Prot
Match: sp|P23345|SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 2.9e-73
Identity = 132/152 (86.84%), Postives = 137/152 (90.13%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGV GTIFFTQEGDGPTTVTG+VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPA K+HGAPEDENRHAGDLGN+  G DG AN  +TD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. Swiss-Prot
Match: sp|Q9SQL5|SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus OX=4615 GN=SOD1 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-72
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGV GTI+FTQEGDGPTTVTG++SGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAG +HGAPEDE RHAGDLGN+ VGEDG  N  I D QIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. Swiss-Prot
Match: sp|P23346|SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays OX=4577 GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 2.5e-72
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSS+GV GTIFFTQEGDGPT VTG+VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPA K+HGAPEDENRHAGDLGN+  G DG AN  +TD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. TrEMBL
Match: tr|B1PE19|B1PE19_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=SOD PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 3.9e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSSSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 152

BLAST of CsGy1G026400 vs. TrEMBL
Match: tr|A0A0S2LL33|A0A0S2LL33_CUCME (Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103492226 PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.2e-77
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

BLAST of CsGy1G026400 vs. TrEMBL
Match: tr|A0A0U2DB27|A0A0U2DB27_LUFAE (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.6e-76
Identity = 141/152 (92.76%), Postives = 145/152 (95.39%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVK VAVLGSSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTI+DCQIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. TrEMBL
Match: tr|A0A1R3GB52|A0A1R3GB52_9ROSI (Superoxide dismutase [Cu-Zn] OS=Corchorus olitorius OX=93759 GN=COLO4_36053 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.3e-73
Identity = 138/152 (90.79%), Postives = 142/152 (93.42%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAPEDENRHAGDLGNI VG+DG A+F+ TD QIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNITVGDDGTASFSKTDSQIPLTGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

BLAST of CsGy1G026400 vs. TrEMBL
Match: tr|A0A1R3JQK4|A0A1R3JQK4_COCAP (Superoxide dismutase [Cu-Zn] OS=Corchorus capsularis OX=210143 GN=CCACVL1_04695 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.2e-73
Identity = 138/152 (90.79%), Postives = 141/152 (92.76%), Query Frame = 0

Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAPEDENRHAGDLGNI VG+DG A+F  TD QIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNITVGDDGTASFCKTDSQIPLTGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NP_001267697.15.9e-83100.00superoxide dismutase [Cu-Zn]-like [Cucumis sativus] >XP_011658153.1 PREDICTED: s... [more]
XP_008450736.14.9e-7795.39PREDICTED: superoxide dismutase [Cu-Zn] [Cucumis melo] >XP_008450737.1 PREDICTED... [more]
AKN08991.15.4e-7692.76superoxide dismutase [Luffa aegyptiaca][more]
XP_022158885.11.5e-7390.79superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158886.1 superoxide di... [more]
OMO55314.11.9e-7390.79hypothetical protein COLO4_36053 [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
AT1G08830.16.8e-7385.53copper/zinc superoxide dismutase 1[more]
AT5G18100.12.7e-5363.33copper/zinc superoxide dismutase 3[more]
AT2G28190.11.5e-4367.77copper/zinc superoxide dismutase 2[more]
AT1G12520.11.5e-0829.63copper chaperone for SOD1[more]
Match NameE-valueIdentityDescription
sp|Q07796|SODC_IPOBA1.4e-7590.13Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2[more]
sp|P27082|SODC_NICPL5.8e-7488.16Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 ... [more]
sp|P23345|SODC4_MAIZE2.9e-7386.84Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2[more]
sp|Q9SQL5|SODC_ANACO1.4e-7285.53Superoxide dismutase [Cu-Zn] OS=Ananas comosus OX=4615 GN=SOD1 PE=2 SV=1[more]
sp|P23346|SODC5_MAIZE2.5e-7285.53Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays OX=4577 GN=SODCC.2 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
tr|B1PE19|B1PE19_CUCSA3.9e-83100.00Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=SOD PE=2 SV=1[more]
tr|A0A0S2LL33|A0A0S2LL33_CUCME3.2e-7795.39Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103492226 PE=2 SV=1[more]
tr|A0A0U2DB27|A0A0U2DB27_LUFAE3.6e-7692.76Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1[more]
tr|A0A1R3GB52|A0A1R3GB52_9ROSI1.3e-7390.79Superoxide dismutase [Cu-Zn] OS=Corchorus olitorius OX=93759 GN=COLO4_36053 PE=3... [more]
tr|A0A1R3JQK4|A0A1R3JQK4_COCAP2.2e-7390.79Superoxide dismutase [Cu-Zn] OS=Corchorus capsularis OX=210143 GN=CCACVL1_04695 ... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006801superoxide metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004784superoxide dismutase activity
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018152SOD_Cu/Zn_BS
IPR024134SOD_Cu/Zn_/chaperone
IPR036423SOD-like_Cu/Zn_dom_sf
IPR001424SOD_Cu_Zn_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006801 superoxide metabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005615 extracellular space
cellular_component GO:0005575 cellular_component
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G026400.1CsGy1G026400.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 43..65
score: 80.46
coord: 98..120
score: 58.23
coord: 123..149
score: 73.35
coord: 79..88
score: 72.37
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 12..148
e-value: 3.3E-49
score: 166.6
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 2..145
e-value: 8.35728E-57
score: 175.527
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3DG3DSA:2.60.40.200coord: 1..152
e-value: 4.4E-64
score: 217.3
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILYSSF49329Cu,Zn superoxide dismutase-likecoord: 2..150
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 3..150
NoneNo IPR availablePANTHERPTHR10003:SF34SUPEROXIDE DISMUTASE CU-ZN 2, CHLOROPLASTICcoord: 3..150
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 43..53
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00332SOD_CU_ZN_2coord: 137..148