CsGy1G026340 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G026340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Defensin-like (DEFL) family protein
Location	Chr1 : 24957659 .. 24958763 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGTTAGGAGCAACTTTTGGTTTGGTCTTCATTGCCTTCCTCGTCTTATACTCAGGTCGATCTCTCTTTACTTACTCTCTTTCTTGATTAAGTTTTCAATGATTGTTTTTAATCAAATTACTTTTTAGATGACAATCTTTTCACAAGAAATTGCAATTAATAACAAAGTTAAGAGTACCATCAAACTTACGATAAATCACAACTACATTATATTATATTTTCTTAATGCTTTTTAAGTGCAACGCTCGAGTTTAGGAGAAGGACGTGAATGAACCGATATTATTACATTGAAATGAAACTGATCATGAGGACATGAAAGTAAAATTAATAAAGACTTTTAAAAAAAAAATAAAAGTTGCTACGTATTCCAACGTGCACTTCGGTGAGTTCAATCATAGGAACTCTAAAATTAAGCATGTTTGGACTTAAAACATTCCTATGTTTGGGTGACCTCTCAAGAAATTTTTCTAGGAAAAGGATGATGTTGCTAGGTCGCAGGACATGCATGAAAATGTTAAGGATTCAAATTCCAAATCCTGGTTTGAATTCTAGGACGAGAGTTTATCGAAGTTGTCTTGATATGAAAATAACGAAACCCTAAAATGAACGGATCGTTGATATAATTACAGGGAGTACGAATACAAATGCACAATTGTGTTGCAACAATCATCCAGAGTTGGGAGAATGCGAGGCAGGAGTAGACGATGCAAATGATGGGAAGTGTTGGCTTCATTGCATTGCTGGTTGTGAGAAAGGTGGATTCTGTAAACATCTCAGTGATAAAAATGTCTGTCATTGTTATTGTTGATCATTATGTAATTTCGACCTTTGTTTCCATATTGTATGCATGCATGCAATGTGATACATTAGTCCTCTCCATATAATAAAAATATCAATAACATAACGAGACTTTTGAAATATCTTCCTCATTGAAAATTGTCATTCGAATCGAATGAGTTTAGCATTATAGTCCGTGCGTTTTCAACACTCAATTCAAATTTGAATTTCAGATTACGTAGTTTCAATAGTGTCCAAACACCCCTTAGGCACCCTTAAACGAAATGATGGAAGAATTGGTTGCATCAATAATATTGGTTGA

mRNA sequence

ATGGCGAAGTTAGGAGCAACTTTTGGTTTGGTCTTCATTGCCTTCCTCGTCTTATACTCAGGGAGTACGAATACAAATGCACAATTGTGTTGCAACAATCATCCAGAGTTGGGAGAATGCGAGGCAGGAGTAGACGATGCAAATGATGGGAAGTGTTGGCTTCATTGCATTGCTGGTTGTGAGAAAGATTACGTAGTTTCAATAGTGTCCAAACACCCCTTAGGCACCCTTAAACGAAATGATGGAAGAATTGGTTGCATCAATAATATTGGTTGA

Coding sequence (CDS)

ATGGCGAAGTTAGGAGCAACTTTTGGTTTGGTCTTCATTGCCTTCCTCGTCTTATACTCAGGGAGTACGAATACAAATGCACAATTGTGTTGCAACAATCATCCAGAGTTGGGAGAATGCGAGGCAGGAGTAGACGATGCAAATGATGGGAAGTGTTGGCTTCATTGCATTGCTGGTTGTGAGAAAGATTACGTAGTTTCAATAGTGTCCAAACACCCCTTAGGCACCCTTAAACGAAATGATGGAAGAATTGGTTGCATCAATAATATTGGTTGA

Protein sequence

MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKDYVVSIVSKHPLGTLKRNDGRIGCINNIG

Homology

[Close]

BLAST of CsGy1G026340 vs. NCBI nr
Match: KGN66136.1 (hypothetical protein Csa_1G573060 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 8.6e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60
          MAKLGATFGLVFIAFLVLYSGS NTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of CsGy1G026340 vs. NCBI nr
Match: KGN66133.1 (hypothetical protein Csa_1G573030 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 5.6e-20
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60
          MAKLGA F  VF+AFLVLY+GS NTNAQLCCNNH ELG C  GVDD  DGKCW HCI GC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 EK 63
          E+
Sbjct: 61 ER 62

[Close]

BLAST of CsGy1G026340 vs. NCBI nr
Match: KGN66134.1 (hypothetical protein Csa_1G573040 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60
          MAK+G    +VFI FL  YSGS NTNAQLCC NHPE G C+ GVDDA DG+CWL CI GC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 EKDYVVSIVSK 72
          EK  +   V K
Sbjct: 61 EKGGICKRVGK 71

[Close]

BLAST of CsGy1G026340 vs. NCBI nr
Match: KGN66137.1 (hypothetical protein Csa_1G573070 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-10
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDA--NDGKCWLHCIA 60
          MAK+G     V + FLV YSG+ N NA +CCNN+P LG C+ GVDD+   +GKCW  C +
Sbjct: 1  MAKVG-LISCVLVVFLVFYSGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTS 60

Query: 61 GCEK 63
          GC K
Sbjct: 61 GCTK 63

[Close]

BLAST of CsGy1G026340 vs. NCBI nr
Match: XP_006478777.1 (putative defensin-like protein 20 [Citrus sinensis] >XP_024045470.1 putative defensin-like protein 20 [Citrus clementina])

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDAND--GKCWLHCIA 60
          MA++     ++ +A ++  +     +   CCNNHPELG C+ GVDD  D  GKCW +C++
Sbjct: 1  MAQVKVLTYVLIVALMLCINSKEVVSKSKCCNNHPELGGCKHGVDDDPDQGGKCWTYCVS 60

Query: 61 GCEK 63
           CEK
Sbjct: 61 DCEK 64

[Close]

BLAST of CsGy1G026340 vs. TrEMBL
Match: tr|A0A0A0M1N0|A0A0A0M1N0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.7e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60
          MAKLGATFGLVFIAFLVLYSGS NTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of CsGy1G026340 vs. TrEMBL
Match: tr|A0A0A0LWJ9|A0A0A0LWJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.7e-20
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60
          MAKLGA F  VF+AFLVLY+GS NTNAQLCCNNH ELG C  GVDD  DGKCW HCI GC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 EK 63
          E+
Sbjct: 61 ER 62

[Close]

BLAST of CsGy1G026340 vs. TrEMBL
Match: tr|A0A0A0LYL5|A0A0A0LYL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60
          MAK+G    +VFI FL  YSGS NTNAQLCC NHPE G C+ GVDDA DG+CWL CI GC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 EKDYVVSIVSK 72
          EK  +   V K
Sbjct: 61 EKGGICKRVGK 71

[Close]

BLAST of CsGy1G026340 vs. TrEMBL
Match: tr|A0A0A0LZ58|A0A0A0LZ58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573070 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1  MAKLGATFGLVFIAFLVLYSGSTNTNAQLCCNNHPELGECEAGVDDA--NDGKCWLHCIA 60
          MAK+G     V + FLV YSG+ N NA +CCNN+P LG C+ GVDD+   +GKCW  C +
Sbjct: 1  MAKVG-LISCVLVVFLVFYSGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTS 60

Query: 61 GCEK 63
          GC K
Sbjct: 61 GCTK 63

[Close]

BLAST of CsGy1G026340 vs. TrEMBL
Match: tr|A0A0A0LW61|A0A0A0LW61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573050 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 17 VLYSGSTNTNAQLCCNNHPELGECEAGVDDA--NDGKCWLHCIAGCEK 63
          ++ +G+ N NA +CCNN+P LG C+ GVDD+   +GKCW  C +GC K
Sbjct: 1  MMITGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTK 48

The following BLAST results are available for this feature:

BLAST of CsGy1G026340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66136.1	8.6e-29	98.39	hypothetical protein Csa_1G573060 [Cucumis sativus]	[more]
KGN66133.1	5.6e-20	75.81	hypothetical protein Csa_1G573030 [Cucumis sativus]	[more]
KGN66134.1	3.1e-18	63.38	hypothetical protein Csa_1G573040 [Cucumis sativus]	[more]
KGN66137.1	3.1e-10	53.13	hypothetical protein Csa_1G573070 [Cucumis sativus]	[more]
XP_006478777.1	2.1e-06	40.63	putative defensin-like protein 20 [Citrus sinensis] >XP_024045470.1 putative def...	[more]

BLAST of CsGy1G026340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G026340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G026340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M1N0\|A0A0A0M1N0_CUCSA	5.7e-29	98.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=4 SV=1	[more]
tr\|A0A0A0LWJ9\|A0A0A0LWJ9_CUCSA	3.7e-20	75.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=4 SV=1	[more]
tr\|A0A0A0LYL5\|A0A0A0LYL5_CUCSA	2.0e-18	63.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=4 SV=1	[more]
tr\|A0A0A0LZ58\|A0A0A0LZ58_CUCSA	2.0e-10	53.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573070 PE=4 SV=1	[more]
tr\|A0A0A0LW61\|A0A0A0LW61_CUCSA	1.8e-06	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573050 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0050832	defense response to fungus

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR022618	Defensin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G026340.1	CsGy1G026340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022618	Defensin-like protein	PFAM	PF10868	Defensin_like	coord: 29..62 e-value: 1.2E-6 score: 29.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G026340	Wax gourd	cgybwgoB101
CsGy1G026340	Cucurbita maxima (Rimu)	cgybcmaB022
CsGy1G026340	Cucurbita maxima (Rimu)	cgybcmaB054
CsGy1G026340	Cucurbita moschata (Rifu)	cgybcmoB022
CsGy1G026340	Cucurbita moschata (Rifu)	cgybcmoB050
CsGy1G026340	Cucurbita pepo (Zucchini)	cgybcpeB027
CsGy1G026340	Cucurbita pepo (Zucchini)	cgybcpeB143
CsGy1G026340	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G026340	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G026340	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G026340	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G026340	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G026340	Watermelon (97103) v1	cgybwmB022
CsGy1G026340	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G026340	Silver-seed gourd	carcgybB0761
CsGy1G026340	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G026340	Watermelon (97103) v2	cgybwmbB041