CsGy1G026320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G026320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Defensin-like (DEFL) family protein
Location	Chr1 : 24955163 .. 24955584 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAAGTGGGAGTTATTTCTTGGGTCGTCTTCATCGTCTTTCTTGCCTTCTATTCAGGTTAACTTCTATATATTTAAGACATTTCAACGTATCGTCGTAAAAGTATGTGTTTGAACAGTTCTGGTTAAAAGAATTAAAAATGATTGAGAAAATTAAGAAAACTGTGATCTCTGATTAACAAACTGATCTGATCATATGGGTATTTTTCTCTCAACATTAATGGATTATTGTAATTACAGGGAGTTTGAACACAAATGCACAACTGTGTTGCATCAATCATCCTGAGTGGGGAGCTTGCAAGCCAGGAGTAGACGATGCAACTGATGGAAGGTGTTGGCTTAAATGCATTGGTGGTTGTGAGAAAGGTGGGATCTGTAAACGAGTTGGGAAGAAACATGTCTGCCATTGTTACTGCTGA

mRNA sequence

ATGGCTAAAGTGGGAGTTATTTCTTGGGTCGTCTTCATCGTCTTTCTTGCCTTCTATTCAGGGAGTTTGAACACAAATGCACAACTGTGTTGCATCAATCATCCTGAGTGGGGAGCTTGCAAGCCAGGAGTAGACGATGCAACTGATGGAAGGTGTTGGCTTAAATGCATTGGTGGTTGTGAGAAAGGTGGGATCTGTAAACGAGTTGGGAAGAAACATGTCTGCCATTGTTACTGCTGA

Coding sequence (CDS)

ATGGCTAAAGTGGGAGTTATTTCTTGGGTCGTCTTCATCGTCTTTCTTGCCTTCTATTCAGGGAGTTTGAACACAAATGCACAACTGTGTTGCATCAATCATCCTGAGTGGGGAGCTTGCAAGCCAGGAGTAGACGATGCAACTGATGGAAGGTGTTGGCTTAAATGCATTGGTGGTTGTGAGAAAGGTGGGATCTGTAAACGAGTTGGGAAGAAACATGTCTGCCATTGTTACTGCTGA

Protein sequence

MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGGICKRVGKKHVCHCYC

Homology

[Close]

BLAST of CsGy1G026320 vs. NCBI nr
Match: KGN66134.1 (hypothetical protein Csa_1G573040 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 9.1e-43
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          EKGGICKRVGKKHVCHCYC
Sbjct: 61 EKGGICKRVGKKHVCHCYC 79

[Close]

BLAST of CsGy1G026320 vs. NCBI nr
Match: KGN66136.1 (hypothetical protein Csa_1G573060 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 9.1e-27
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAK+G    +VFI FL  YSGS+NTNAQLCC NHPE G C+ GVDDA DG+CWL CI GC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          EKGG CK +  K+VCHCYC
Sbjct: 61 EKGGFCKHLSDKNVCHCYC 79

[Close]

BLAST of CsGy1G026320 vs. NCBI nr
Match: KGN66133.1 (hypothetical protein Csa_1G573030 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAK+G I   VF+ FL  Y+GS+NTNAQLCC NH E G+C PGVDD  DG+CW  CI GC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          E+GG CK++   HVCHCYC
Sbjct: 61 ERGGFCKKLWYGHVCHCYC 79

[Close]

BLAST of CsGy1G026320 vs. NCBI nr
Match: KGN66137.1 (hypothetical protein Csa_1G573070 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDA--TDGRCWLKCIG 60
          MAKVG+IS  V +VFL FYSG+LN NA +CC N+P  G+CKPGVDD+   +G+CW  C  
Sbjct: 1  MAKVGLIS-CVLVVFLVFYSGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTS 60

Query: 61 GCEKGGICKRVGK--KHVCHCYC 80
          GC KGG CKRVG+  +HVCHCYC
Sbjct: 61 GCTKGGFCKRVGRNGRHVCHCYC 82

[Close]

BLAST of CsGy1G026320 vs. NCBI nr
Match: KGN66135.1 (hypothetical protein Csa_1G573050 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 20 SGSLNTNAQLCCINHPEWGACKPGVDDA--TDGRCWLKCIGGCEKGGICKRVGK--KHVC 79
          +G+LN NA +CC N+P  G+CKPGVDD+   +G+CW  C  GC KGG CKRVG+  +HVC
Sbjct: 4  TGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVC 63

[Close]

BLAST of CsGy1G026320 vs. TAIR10
Match: AT4G14276.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-15
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQ------------LCCINHPEWGACKPGVDDAT 60
          M +  V+S+V+F   +    GS+  + Q            +CC  HP  G C P +DD+ 
Sbjct: 1  MVRTNVVSFVLFAA-IVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSA 60

Query: 61 D--GRCWLKCIGGCEKGGICKRVGKKHVCHCYC 80
          +  G+CW  CI GCE GG CK  G KH+CHC C
Sbjct: 61 EKGGKCWKFCIEGCETGGFCKLFGHKHICHCNC 92

[Close]

BLAST of CsGy1G026320 vs. TAIR10
Match: AT5G52605.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-15
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 1  MAKVGVISWVVF--IVFLAFYSGS-----LNTNAQLCCINHPEWGACKPGVDD--ATDGR 60
          M +  V+S+V+F  IV    Y        +  +  +CC  HP  G C PG+DD    DG+
Sbjct: 1  MVRTNVVSFVLFAAIVLCILYGQKHIAPWIFEDKSICCKEHPSVGRCLPGIDDDAEKDGK 60

Query: 61 CWLKCIGGCEKGGICKRVGKKHVCHCYC 80
          CW  CI GCE GG CK    KH+CHC C
Sbjct: 61 CWKFCIEGCETGGFCKLFEHKHICHCNC 88

[Close]

BLAST of CsGy1G026320 vs. Swiss-Prot
Match: sp|Q2V2S1|DEF20_ARATH (Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-13
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 1  MAKVGVISWVVF--IVFLAFYSGS-----LNTNAQLCCINHPEWGACKPGVDD--ATDGR 60
          M +  V+S+V+F  IV    Y        +  +  +CC  HP  G C PG+DD    DG+
Sbjct: 1  MVRTNVVSFVLFAAIVLCILYGQKHIAPWIFEDKSICCKEHPSVGRCLPGIDDDAEKDGK 60

Query: 61 CWLKCIGGCEKGGICKRVGKKHVCHCYC 80
          CW  CI GCE GG CK    KH+CHC C
Sbjct: 61 CWKFCIEGCETGGFCKLFEHKHICHCNC 88

[Close]

BLAST of CsGy1G026320 vs. Swiss-Prot
Match: sp|P0CAX9|DEF21_ARATH (Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-13
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQ------------LCCINHPEWGACKPGVDDAT 60
          M +  V+S+V+F   +    GS+  + Q            +CC  HP  G C P +DD+ 
Sbjct: 1  MVRTNVVSFVLFAA-IVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSA 60

Query: 61 D--GRCWLKCIGGCEKGGICKRVGKKHVCHCYC 80
          +  G+CW  CI GCE GG CK  G KH+CHC C
Sbjct: 61 EKGGKCWKFCIEGCETGGFCKLFGHKHICHCNC 92

[Close]

BLAST of CsGy1G026320 vs. TrEMBL
Match: tr|A0A0A0LYL5|A0A0A0LYL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.0e-43
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          EKGGICKRVGKKHVCHCYC
Sbjct: 61 EKGGICKRVGKKHVCHCYC 79

[Close]

BLAST of CsGy1G026320 vs. TrEMBL
Match: tr|A0A0A0M1N0|A0A0A0M1N0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.0e-27
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAK+G    +VFI FL  YSGS+NTNAQLCC NHPE G C+ GVDDA DG+CWL CI GC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          EKGG CK +  K+VCHCYC
Sbjct: 61 EKGGFCKHLSDKNVCHCYC 79

[Close]

BLAST of CsGy1G026320 vs. TrEMBL
Match: tr|A0A0A0LWJ9|A0A0A0LWJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60
          MAK+G I   VF+ FL  Y+GS+NTNAQLCC NH E G+C PGVDD  DG+CW  CI GC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 EKGGICKRVGKKHVCHCYC 80
          E+GG CK++   HVCHCYC
Sbjct: 61 ERGGFCKKLWYGHVCHCYC 79

[Close]

BLAST of CsGy1G026320 vs. TrEMBL
Match: tr|A0A0A0LZ58|A0A0A0LZ58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573070 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDA--TDGRCWLKCIG 60
          MAKVG+IS  V +VFL FYSG+LN NA +CC N+P  G+CKPGVDD+   +G+CW  C  
Sbjct: 1  MAKVGLIS-CVLVVFLVFYSGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTS 60

Query: 61 GCEKGGICKRVGK--KHVCHCYC 80
          GC KGG CKRVG+  +HVCHCYC
Sbjct: 61 GCTKGGFCKRVGRNGRHVCHCYC 82

[Close]

BLAST of CsGy1G026320 vs. TrEMBL
Match: tr|A0A0A0LW61|A0A0A0LW61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573050 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 20 SGSLNTNAQLCCINHPEWGACKPGVDDA--TDGRCWLKCIGGCEKGGICKRVGK--KHVC 79
          +G+LN NA +CC N+P  G+CKPGVDD+   +G+CW  C  GC KGG CKRVG+  +HVC
Sbjct: 4  TGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVC 63

The following BLAST results are available for this feature:

BLAST of CsGy1G026320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66134.1	9.1e-43	100.00	hypothetical protein Csa_1G573040 [Cucumis sativus]	[more]
KGN66136.1	9.1e-27	68.35	hypothetical protein Csa_1G573060 [Cucumis sativus]	[more]
KGN66133.1	1.6e-23	63.29	hypothetical protein Csa_1G573030 [Cucumis sativus]	[more]
KGN66137.1	2.3e-22	62.65	hypothetical protein Csa_1G573070 [Cucumis sativus]	[more]
KGN66135.1	2.5e-16	59.38	hypothetical protein Csa_1G573050 [Cucumis sativus]	[more]

BLAST of CsGy1G026320 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14276.1	5.7e-15	38.71	Defensin-like (DEFL) family protein	[more]
AT5G52605.1	5.7e-15	42.05	Defensin-like (DEFL) family protein	[more]

BLAST of CsGy1G026320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2V2S1\|DEF20_ARATH	1.0e-13	42.05	Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 P...	[more]
sp\|P0CAX9\|DEF21_ARATH	1.0e-13	38.71	Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1	[more]

BLAST of CsGy1G026320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYL5\|A0A0A0LYL5_CUCSA	6.0e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=4 SV=1	[more]
tr\|A0A0A0M1N0\|A0A0A0M1N0_CUCSA	6.0e-27	68.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=4 SV=1	[more]
tr\|A0A0A0LWJ9\|A0A0A0LWJ9_CUCSA	1.1e-23	63.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=4 SV=1	[more]
tr\|A0A0A0LZ58\|A0A0A0LZ58_CUCSA	1.5e-22	62.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573070 PE=4 SV=1	[more]
tr\|A0A0A0LW61\|A0A0A0LW61_CUCSA	1.6e-16	59.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573050 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0050832	defense response to fungus

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR022618	Defensin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G026320.1	CsGy1G026320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022618	Defensin-like protein	PFAM	PF10868	Defensin_like	coord: 29..79 e-value: 1.1E-14 score: 54.7
IPR022618	Defensin-like protein	PANTHER	PTHR34453	FAMILY NOT NAMED	coord: 1..79

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G026320	Cucurbita maxima (Rimu)	cgybcmaB022
CsGy1G026320	Cucurbita maxima (Rimu)	cgybcmaB054
CsGy1G026320	Cucurbita moschata (Rifu)	cgybcmoB022
CsGy1G026320	Cucurbita moschata (Rifu)	cgybcmoB050
CsGy1G026320	Cucurbita pepo (Zucchini)	cgybcpeB027
CsGy1G026320	Cucurbita pepo (Zucchini)	cgybcpeB143
CsGy1G026320	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G026320	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G026320	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G026320	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G026320	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G026320	Watermelon (97103) v1	cgybwmB022
CsGy1G026320	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G026320	Silver-seed gourd	carcgybB0761
CsGy1G026320	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G026320	Watermelon (97103) v2	cgybwmbB041
CsGy1G026320	Wax gourd	cgybwgoB101