CsGy1G024800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G024800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 23737976 .. 23742812 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGACAAACAGACAGCTCCCTGCTCCGTCGTCCGCTCCAAACAGAACTTCACCTTCTTCTTCTCTTTCCCCTTCTTTCCTTTATTTTCATTTACTTTCTGATTCGATTCCATTAACGACGCCCCCCATTTTTACGTTCTCTCTCATTTTCTCACAATACCCACATCCCCATTTTTTTTTTTTTTTTGTTCTTTCTTCCTCCAATTTCAATTCCTCTCCCCCACTTCCATTCAATTCCTGGTAACATTCTCCTCTTTCTCTTCTTTTCCTTTTCTGGGTCTTCCTTCGTTTCATGTAATCTGTTTTCCCTTTTCATCTTTTTTCTTTATAATTTGCTTTTCATGAAGATCTTTTGATTCACAAATGCCAAAATTCAAACGGCCTTCTTTCTAATCATCTTCCTTCTACTGTTTCTCTCTTGTTTCCCATTTTTCAGTTACTTCTTTGCGATCAAAGCCGTTCAGTTACCTCGACGTGTACGTTTTTATTTTGATGATTACGTTACTTTTTGTTTTCGTTTTTTGTTTTTATTATGTGGGATTCTCTTCCTTTCATCTCCGCTTTCATCTCTGTTTAGGGATTGATTTCTTTCTTCTTTACTCGTTGAAAGTGGAAATGACTGGTCAGATGATTGTTGTTTTTTAAGAAAATTTTATTTTTTAGTGTCATTCTTGTAATGGTTACTTGGAATGGGAATTGATCTGTATTTTTAAATTTGTGGTTTGATTGGTACTTGGTTTCCATTAATGCATGCTGATTACTATAATTTGCATTATACTTTTTCTAATCTTATCAGCATCTATGAAGTGGAGTTGGTTTTTTTCTTTTGGTTCTTTCTTGTTATGTAGTTTGAAAAAAGAAGTTATTATTTTTTATATTTCCTAATTTTTTTTTAAAAAAAATTGATTTTTGTTTATATTTGTGTTTTGCTTTTGATTTCTGCTTATGGGGTTTTCTCCTGATAGTATTTTGTCTCCATTTGTCATTCAGAAGTTTTGAGATTTGAAAGTAATCATATCTTGAGGTTTCACATTTGTGGCTAGTTTAGTTTCAGAATTTACTGATATGTTTTTGGTTAATTTTGCAGGATTTTATACCACAGCTCCATCTGTGAAGTAGACTCATTGAGTTACTGTCCTATAATATTACGAGAGATAGAGCAATTTCCCAAATGCTCAGTTTTGGTAGGTCGAGAAATCAATCAAGGTTCGGGAGATCTGTGTCATTTGGAGGTGAGTTTCTCTTCTATAGTGTTTTAGAAAAATTATGTTTATTGCAACTATGGATGTTTCAAACTTTTAAGTTGCTTGAAAATATGTGAAAATTGTAGCTCTTTAAGATTTTCAAATTTTTTTACTTGTTTTTCTTGCATGGACCTATCTTTTCCCTTGTAGGTATGGATTATCCTGATCCCAAACGGAAGAACAATTTTGTTGGAAAGATCATCTTGGCTGCTTCACTTACTGCAATTTGTATTGTTATGCTCAAGCAATCCCCAAATTTTAGCACCCCAACCCCGGTAGCTCTCAATCTCTAATGATAATTTTATGACTTTATATCACTTCTGACCAAGTACATTCCGTGATTATATTATTTTCTATTGGAAGCTACAAGTCCTGTCGGAAGGATATTTAGACTTTTCACTTGTTATGTGGACTGTCATGTACCAGATCATATTTTACAAGTTTGGTTTAAGGAAATATTATTGTACAATAGCAATACAGCTGCTAATCAATTTCTTTATTTAATTGTACATCATAGTGCATACTCTAATCCCGTGTTTATGTTATTTCATTGCTACGATAAATGTAGGGTTGTATGCATTTCGTTTGTAGGTTGTTTCCAACATCATTTGGCTGATGCAATCGTTTAATTGTAGTTCTGATCTAAGAGGCCAAAAACTGTTCTTTGCTCCAAGATTTGTTTTTATTCACCATTGGCTCTTCTCTGTTTCTGTTTAAAAATTGCTGTCATTTTCAATGAACTTAGCAGTTCTTAGTTTACAAAGTTGCTCCATTGAATTTCCTTCAACTTGTTCTTTAATTTTAGTTTTAGAATTCTGATCTGATATTTTTGGGCAGCAGTCAAATAATTGATAACTCTCTCTCTCTCTCTCTCTCTCTCTCGCAGATAAAGCTCTTATATCTGGTGCTCTTTGTGATCAATTTTGTAGACACCCATCTTAATATTTTTGCTTTTAAACTCCTTGGCTTATTTAGAGGATTTCTTATTTCTAAACCTGCCTTTATTGGGCAATGAAAGAACTTTTCTTATCGAAAAAAGACTTGTTGAGAATCAACTTTTCCTAAAAGAATCACTCTTTTATGTAATTTCTAAAGTTGTGCATGTTTTTTTTCCTTCCAGTTTGCAAGTCATCAACTAGGAGTTACTCATGTTCTAGTAACAGGAGGTGCAGGATACATTGGCTCGCATGCTGCACTTCGATTATTAAAGGACTCATACCGTGTAACAATTGTGGTATGACACTTTTTAATATTGTATTTGTACCCTTTTCATATCTTTGGTGTTATACCCTATTAATAATTCAATCACGTCAGGACAACCTATCACGAGGAAACCTAGGTGCTGTGAAGGTTTTGCAAGAATTGTTTCCAGAATATGGAAGGCTTCAGTTCATCTATGCTGACTTGGGAGATGCAAAATCCGTATCCTTTCTACTTGACATGTTATGATTTATATTTCTGAAGAATACTCGAAATACTATCTGCCTTGAATACAAATGTTGCCTTAACTGATATGTTCAGGTTAACAAAATATTTTCAGAGAATGCTTTTGATGCCGTCATGCATTTTGCAGCGGTAGCATATGTTGGGGAGAGCACCCTTGATCCCCTGAAGTAAGTTTAAACTGTTAGAATTGCTATTTTTGGGTTGTCTGTCTCTGGTTTCTTGCACCATCATGTAGATTCTGATAGAAGATTGTTTTCCTATCCATAAATGGATTTGAGGTCTCAGCATATATGCAGACTGATGGATGGCCAACATTTTGCGAATAGATGGATGATTTTGAAAATTTGTTCATGATCATAACTTCTGGTCCATTGTTCTTATCAACCTGTTGATATAAATGTTTAAACTTGAATCAATAAAACAGTTCAATTGTTAGAAAAGGGAATCCGAAAAAGTTTCTCGTTTTCTTTGGGGTTGAGAGATGAGAAAACATGGAGGAACTGTTTTGAGTTTTAGCATTGATCATTTCTGAGGACGGTATTTCTTGTTGTAGGTATTATCACAATATTACTTCAAATACCTTGACAGTATTAGAATCAATGGCAGCACATGGTGTGAAGACATTGATCTATTCTAGTACATGTGCTACATATGGAGAGCCAGAAAAAATGCCTATCACTGAAGAAACTTCTCAGGTTCACATCAATGCATCTGCTTGCGTATTATTGTACTTTTGGAAAGATTTGGTATTGTCTTGTATGGATACAGCAGACTAGAGTTACTATTGATAAATATTTGGTTTGTTTTCATTTCAGGCCCCAATTAATCCTTATGGAAAAGCCAAGAAGATGGCAGAAGAAATTATCCTTGACTTTTCAAAAAATTCAAAGATGGCAGTCATGATCCTAAGGTTGTTATTTTACATTATAAACGGTGGTTCCTTACCCTTTTTTCTTTTTTGTGCCTATTTTCTATCTCGTAGAAGTTGCTACCAAAACAGTTTATTTTCATAACTATGTTTTAAATTTTCAAATTTCAGTTTTTTTCCTTGGTAATTTACTGTTCAAAATAGGAGGGAATTTGGAAACCTTTATCAAGTTTTTGTCGAGTGAACCATCTGAGTAAGCTATCTGATGCATGCATGTTTTGAAAATTATTCAGATACTTCAATGTGATTGGTTCTGATCCAGAGGGCAGACTTGGGGAAGCTCCTAGACCTGAGCTTCGTGAGCATGGACGTATTTCGGGTGCTTGTTTTGATGCTGCCCGTGGCATTATTTCTGGGCTTAAGGTAATTTGCTAGTCCAGCCATAGAAATATATAGTTAAGCAAGCATGAACGTATTATATAGTTACAAGATGAAGCTGGTGAATTAATGATTTGAGATATGCAATCAAGTGGGTAGCTGCTTTTGATGTTTTCAGGTCAAAGGAACAGATTACAAAACACATGATGGGACTTGCATACGGGATTATATCGACGTCACTGATCTCGTTGATGCTCATGTTAAAGCCCTGGAGAAGGCAATCCCTGGAAAAGTCGGAATTTACAATGTTGGAACGGGAAAAGGTAGGATGAAAAAAAAATCGTTGCAGTAGTGATACTTCTTTTTACCAACTTTTCATCTCATTGATGAAGAAGCAACTTCTAGACATGGAAATCTGAAGGTAGTTTTTGGTTGTTTTTTCTAATCAGGTCGATCAGTGAAGGAGTTTGTGGAGGCATGCAAGAAGGCAACTGGGGTGGACATCAAAGTGGACTATCTCCCTCGTCGACCAGGTGACTACGCCGAAGTATTTAGCAACCCCACTAAGATCAAGAAAGAACTGAACTGGACAGCGCAGCACACCGATCTTCAAGAAAGTTTAAGTGTTGCTTGGAGGTGGCAGAAGTCCCATCTGAATGGCTATGGAAATTCTTTGGTTATGTCTTCTTGAAGCACACTGATGATGATGGAAGCTAATAGGAGAAAGACTGAAAAAGAGGAGGAGGGAGCGTCTACTGACTTTGAGGATTTACTTCTTTTTTCACATACAAGTAGGAGAAAATACCATATTACTCTCTACATTTTTGTAGTCTATTTTACAATATTGTTTGTTGGTATAGGTAGAGCCATCCCATTTGTTATTATTATTATTATTATTA

mRNA sequence

ATGTGGACAAACAGACAGCTCCCTGCTCCGTCGTCCGCTCCAAACAGAACTTCACCTTCTTCTTCTCTTTCCCCTTCTTTCCTTTATTTTCATTTACTTTCTGATTCGATTCCATTAACGACGCCCCCCATTTTTACGTTCTCTCTCATTTTCTCACAATACCCACATCCCCATTTTTTTTTTTTTTTTGTTCTTTCTTCCTCCAATTTCAATTCCTCTCCCCCACTTCCATTCAATTCCTGTTACTTCTTTGCGATCAAAGCCGTTCAGTTACCTCGACGTGATTTTATACCACAGCTCCATCTGTGAAGTAGACTCATTGAGTTACTGTCCTATAATATTACGAGAGATAGAGCAATTTCCCAAATGCTCAGTTTTGGTAGGTCGAGAAATCAATCAAGGTTCGGGAGATCTGTGTCATTTGGAGGTATGGATTATCCTGATCCCAAACGGAAGAACAATTTTGTTGGAAAGATCATCTTGGCTGCTTCACTTACTGCAATTTGTATTGTTATGCTCAAGCAATCCCCAAATTTTAGCACCCCAACCCCGTTTGCAAGTCATCAACTAGGAGTTACTCATGTTCTAGTAACAGGAGGTGCAGGATACATTGGCTCGCATGCTGCACTTCGATTATTAAAGGACTCATACCGTGTAACAATTGTGGACAACCTATCACGAGGAAACCTAGGTGCTGTGAAGGTTTTGCAAGAATTGTTTCCAGAATATGGAAGGCTTCAGTTCATCTATGCTGACTTGGGAGATGCAAAATCCGTTAACAAAATATTTTCAGAGAATGCTTTTGATGCCGTCATGCATTTTGCAGCGGTAGCATATGTTGGGGAGAGCACCCTTGATCCCCTGAAGTATTATCACAATATTACTTCAAATACCTTGACAGTATTAGAATCAATGGCAGCACATGGTGTGAAGACATTGATCTATTCTAGTACATGTGCTACATATGGAGAGCCAGAAAAAATGCCTATCACTGAAGAAACTTCTCAGGCCCCAATTAATCCTTATGGAAAAGCCAAGAAGATGGCAGAAGAAATTATCCTTGACTTTTCAAAAAATTCAAAGATGGCAGTCATGATCCTAAGATACTTCAATGTGATTGGTTCTGATCCAGAGGGCAGACTTGGGGAAGCTCCTAGACCTGAGCTTCGTGAGCATGGACGTATTTCGGGTGCTTGTTTTGATGCTGCCCGTGGCATTATTTCTGGGCTTAAGGTCAAAGGAACAGATTACAAAACACATGATGGGACTTGCATACGGGATTATATCGACGTCACTGATCTCGTTGATGCTCATGTTAAAGCCCTGGAGAAGGCAATCCCTGGAAAAGTCGGAATTTACAATGTTGGAACGGGAAAAGGTCGATCAGTGAAGGAGTTTGTGGAGGCATGCAAGAAGGCAACTGGGGTGGACATCAAAGTGGACTATCTCCCTCGTCGACCAGGTGACTACGCCGAAGTATTTAGCAACCCCACTAAGATCAAGAAAGAACTGAACTGGACAGCGCAGCACACCGATCTTCAAGAAAGTTTAAGTGTTGCTTGGAGGTGGCAGAAGTCCCATCTGAATGGCTATGGAAATTCTTTGGTTATGTCTTCTTGAAGCACACTGATGATGATGGAAGCTAATAGGAGAAAGACTGAAAAAGAGGAGGAGGGAGCGTCTACTGACTTTGAGGATTTACTTCTTTTTTCACATACAAGTAGGAGAAAATACCATATTACTCTCTACATTTTTGTAGTCTATTTTACAATATTGTTTGTTGGTATAGGTAGAGCCATCCCATTTGTTATTATTATTATTATTATTA

Coding sequence (CDS)

ATGTGGACAAACAGACAGCTCCCTGCTCCGTCGTCCGCTCCAAACAGAACTTCACCTTCTTCTTCTCTTTCCCCTTCTTTCCTTTATTTTCATTTACTTTCTGATTCGATTCCATTAACGACGCCCCCCATTTTTACGTTCTCTCTCATTTTCTCACAATACCCACATCCCCATTTTTTTTTTTTTTTTGTTCTTTCTTCCTCCAATTTCAATTCCTCTCCCCCACTTCCATTCAATTCCTGTTACTTCTTTGCGATCAAAGCCGTTCAGTTACCTCGACGTGATTTTATACCACAGCTCCATCTGTGA

Protein sequence

MWTNRQLPAPSSAPNRTSPSSSLSPSFLYFHLLSDSIPLTTPPIFTFSLIFSQYPHPHFFFFFVLSSSNFNSSPPLPFNSCYFFAIKAVQLPRRDFIPQLHL

Homology

[Close]

BLAST of CsGy1G024800 vs. NCBI nr
Match: KGN65966.1 (hypothetical protein Csa_1G554530 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MWTNRQLPAPSSAPNRTSPSSSLSPSFLYFHLLSDSIPLTTPPIFTFSLIFSQYPHXXXX 60
           MWTNRQLPAPSSAPNRTSPSSSLSPSFLYFHLLSDSIPLTTPPIFTFSLIFSQYPHXXXX
Sbjct: 1   MWTNRQLPAPSSAPNRTSPSSSLSPSFLYFHLLSDSIPLTTPPIFTFSLIFSQYPHXXXX 60

Query: 61  XXXXXXXXXXXXXPPLPFNSCYFFAIKAVQLPRRDFIPQLHL 103
           XXXXXXXXXXXXXPPLPFNSCYFFAIKAVQLPRRDFIPQLHL
Sbjct: 61  XXXXXXXXXXXXXPPLPFNSCYFFAIKAVQLPRRDFIPQLHL 102

[Close]

BLAST of CsGy1G024800 vs. TrEMBL
Match: tr|A0A0A0M194|A0A0A0M194_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554530 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MWTNRQLPAPSSAPNRTSPSSSLSPSFLYFHLLSDSIPLTTPPIFTFSLIFSQYPHXXXX 60
           MWTNRQLPAPSSAPNRTSPSSSLSPSFLYFHLLSDSIPLTTPPIFTFSLIFSQYPHXXXX
Sbjct: 1   MWTNRQLPAPSSAPNRTSPSSSLSPSFLYFHLLSDSIPLTTPPIFTFSLIFSQYPHXXXX 60

Query: 61  XXXXXXXXXXXXXPPLPFNSCYFFAIKAVQLPRRDFIPQLHL 103
           XXXXXXXXXXXXXPPLPFNSCYFFAIKAVQLPRRDFIPQLHL
Sbjct: 61  XXXXXXXXXXXXXPPLPFNSCYFFAIKAVQLPRRDFIPQLHL 102

The following BLAST results are available for this feature:

BLAST of CsGy1G024800 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65966.1	3.5e-39	100.00	hypothetical protein Csa_1G554530 [Cucumis sativus]	[more]

BLAST of CsGy1G024800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G024800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G024800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M194\|A0A0A0M194_CUCSA	2.3e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554530 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G024800.1	CsGy1G024800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G024800	Csa1G554530	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G024800	CsaV3_1G037720	Cucumber (Chinese Long) v3	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G024800	Wax gourd	cgybwgoB051
CsGy1G024800	Cucurbita maxima (Rimu)	cgybcmaB076
CsGy1G024800	Cucurbita maxima (Rimu)	cgybcmaB087
CsGy1G024800	Cucurbita moschata (Rifu)	cgybcmoB070
CsGy1G024800	Cucurbita moschata (Rifu)	cgybcmoB083
CsGy1G024800	Cucurbita pepo (Zucchini)	cgybcpeB019
CsGy1G024800	Cucurbita pepo (Zucchini)	cgybcpeB072
CsGy1G024800	Bottle gourd (USVL1VR-Ls)	cgyblsiB019
CsGy1G024800	Melon (DHL92) v3.5.1	cgybmeB027
CsGy1G024800	Melon (DHL92) v3.6.1	cgybmedB026
CsGy1G024800	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G024800	Silver-seed gourd	carcgybB0404
CsGy1G024800	Silver-seed gourd	carcgybB0458