CsGy1G023450 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G023450
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 22278728 .. 22279331 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGCCGTTTCAATAATAAGATAGAGTTTAATTTAAAGAATGTATGTACATTGAGATATTAGGAATGTGATCCTTTTTTTTCTTTACTTACCAAAATTAACAACACATTTCATCTATTTTTTGTTCTATATATCCTTCATTCAAATTCACCAATTTTCAACATGATAAAAACTTCCCATAGCTAATTTCTTCATTTCTCTCTACGTAAACACACACATATATGTTTGATTTCTTTATTTCCTAATCTCCATTACAAATCATTCAAACCAAAGAAAATCCAACAACTAACATATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGGTACGTAAGATTGCCAATTAACTTTGCTGTTGAATAGTCTAGATTTGTATAATATATAGAAAACTAAATAATCTAATATCATATCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAA

mRNA sequence

AATAGCCGTTTCAATAATAAGATAGAGTTTAATTTAAAGAATGTATGTACATTGAGATATTAGGAATGTGATCCTTTTTTTTCTTTACTTACCAAAATTAACAACACATTTCATCTATTTTTTGTTCTATATATCCTTCATTCAAATTCACCAATTTTCAACATGATAAAAACTTCCCATAGCTAATTTCTTCATTTCTCTCTACGTAAACACACACATATATGTTTGATTTCTTTATTTCCTAATCTCCATTACAAATCATTCAAACCAAAGAAAATCCAACAACTAACATATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAA

Coding sequence (CDS)

ATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAA

Protein sequence

MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSFEVNAVRGRHITKNP

Homology

[Close]

BLAST of CsGy1G023450 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNAVRGRHITKNP 75
          EVNAVRGRHITKNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]

BLAST of CsGy1G023450 vs. NCBI nr
Match: KGN65815.1 (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-23
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARL+L LLLSF L TSARIIPHSENQE  Y++NDY DPGANPRH+PFPPP  H F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNAVRGRHITKNP 75
          E++ V+   ITKNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]

BLAST of CsGy1G023450 vs. NCBI nr
Match: XP_011658636.1 (PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1G532260 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MDYSKAR--LALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60
          MDYSKAR  LALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60

Query: 61 SFEVNAVRGRHITKNP 75
          S EV+ V+ R I   P
Sbjct: 61 SSEVSVVKSRLIKNKP 75

[Close]

BLAST of CsGy1G023450 vs. NCBI nr
Match: KGN65817.1 (hypothetical protein Csa_1G532250 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-14
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +P         P     SF
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXP-----SF 60

Query: 61 EVNAVRGRHITKNP 75
          EVN V+ RHI KNP
Sbjct: 61 EVNVVKDRHIKKNP 69

[Close]

BLAST of CsGy1G023450 vs. NCBI nr
Match: XP_023522911.1 (extensin-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.1 bits (126), Expect = 4.6e-04
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 5  KARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDP-----FPPP 56
          KARL L  LLSFA  +SARI+  S  Q    ++NDYSDPG NP   P     FPPP
Sbjct: 4  KARLCLVFLLSFAFVSSARIMSDSGKQVIEIVINDYSDPGKNPTLSPVVPKQFPPP 59

[Close]

BLAST of CsGy1G023450 vs. TAIR10
Match: AT2G29995.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.5e-04
Identity = 26/56 (46.43%), Postives = 30/56 (53.57%), Query Frame = 0


Query: 4  SKARLALFLLLSFALATSARIIPHSENQEATYI--------MNDYSDPGANPRHDP 52
          S+  L LFL  +FAL +SARI       E T +         NDYSDP AN RHDP
Sbjct: 7  SRIGLCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDP 62

[Close]

BLAST of CsGy1G023450 vs. TrEMBL
Match: tr|A0A0A0M0T8|A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNAVRGRHITKNP 75
          EVNAVRGRHITKNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]

BLAST of CsGy1G023450 vs. TrEMBL
Match: tr|A0A0A0LV67|A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARL+L LLLSF L TSARIIPHSENQE  Y++NDY DPGANPRH+PFPPP  H F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNAVRGRHITKNP 75
          E++ V+   ITKNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]

BLAST of CsGy1G023450 vs. TrEMBL
Match: tr|A0A0A0LVJ6|A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.7e-20
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MDYSKAR--LALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60
          MDYSKAR  LALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60

Query: 61 SFEVNAVRGRHITKNP 75
          S EV+ V+ R I   P
Sbjct: 61 SSEVSVVKSRLIKNKP 75

[Close]

BLAST of CsGy1G023450 vs. TrEMBL
Match: tr|A0A0A0LY98|A0A0A0LY98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-14
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +P         P     SF
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHXXXXXXXP-----SF 60

Query: 61 EVNAVRGRHITKNP 75
          EVN V+ RHI KNP
Sbjct: 61 EVNVVKDRHIKKNP 69

The following BLAST results are available for this feature:

BLAST of CsGy1G023450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65816.1	1.9e-34	100.00	hypothetical protein Csa_1G532240 [Cucumis sativus]	[more]
KGN65815.1	3.4e-23	72.97	hypothetical protein Csa_1G532230 [Cucumis sativus]	[more]
XP_011658636.1	1.3e-19	72.37	PREDICTED: protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_1...	[more]
KGN65817.1	6.3e-14	62.16	hypothetical protein Csa_1G532250 [Cucumis sativus]	[more]
XP_023522911.1	4.6e-04	53.57	extensin-like, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G023450 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29995.1	1.5e-04	46.43	unknown protein	[more]

BLAST of CsGy1G023450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G023450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0T8\|A0A0A0M0T8_CUCSA	1.3e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]
tr\|A0A0A0LV67\|A0A0A0LV67_CUCSA	2.2e-23	72.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]
tr\|A0A0A0LVJ6\|A0A0A0LVJ6_CUCSA	8.7e-20	72.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532260 PE=4 SV=1	[more]
tr\|A0A0A0LY98\|A0A0A0LY98_CUCSA	4.2e-14	62.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532250 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G023450.1	CsGy1G023450.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G023450	Cucurbita maxima (Rimu)	cgybcmaB075
CsGy1G023450	Cucurbita maxima (Rimu)	cgybcmaB083
CsGy1G023450	Cucurbita maxima (Rimu)	cgybcmaB104
CsGy1G023450	Cucurbita maxima (Rimu)	cgybcmaB133
CsGy1G023450	Cucurbita maxima (Rimu)	cgybcmaB140
CsGy1G023450	Cucurbita moschata (Rifu)	cgybcmoB069
CsGy1G023450	Cucurbita moschata (Rifu)	cgybcmoB077
CsGy1G023450	Cucurbita moschata (Rifu)	cgybcmoB098
CsGy1G023450	Cucurbita moschata (Rifu)	cgybcmoB124
CsGy1G023450	Cucurbita moschata (Rifu)	cgybcmoB125
CsGy1G023450	Cucurbita moschata (Rifu)	cgybcmoB131
CsGy1G023450	Cucurbita pepo (Zucchini)	cgybcpeB065
CsGy1G023450	Cucurbita pepo (Zucchini)	cgybcpeB071
CsGy1G023450	Cucurbita pepo (Zucchini)	cgybcpeB091
CsGy1G023450	Cucurbita pepo (Zucchini)	cgybcpeB149
CsGy1G023450	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G023450	Cucumber (Chinese Long) v2	cgybcuB023
CsGy1G023450	Bottle gourd (USVL1VR-Ls)	cgyblsiB027
CsGy1G023450	Melon (DHL92) v3.5.1	cgybmeB023
CsGy1G023450	Melon (DHL92) v3.5.1	cgybmeB059
CsGy1G023450	Melon (DHL92) v3.6.1	cgybmedB021
CsGy1G023450	Melon (DHL92) v3.6.1	cgybmedB053
CsGy1G023450	Watermelon (Charleston Gray)	cgybwcgB004
CsGy1G023450	Watermelon (Charleston Gray)	cgybwcgB044
CsGy1G023450	Watermelon (Charleston Gray)	cgybwcgB055
CsGy1G023450	Watermelon (97103) v1	cgybwmB005
CsGy1G023450	Watermelon (97103) v1	cgybwmB023
CsGy1G023450	Watermelon (97103) v1	cgybwmB066
CsGy1G023450	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G023450	Wild cucumber (PI 183967)	cgybcpiB022
CsGy1G023450	Silver-seed gourd	carcgybB0166
CsGy1G023450	Silver-seed gourd	carcgybB0390
CsGy1G023450	Silver-seed gourd	carcgybB0525
CsGy1G023450	Silver-seed gourd	carcgybB0655
CsGy1G023450	Silver-seed gourd	carcgybB0983
CsGy1G023450	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G023450	Watermelon (97103) v2	cgybwmbB015
CsGy1G023450	Watermelon (97103) v2	cgybwmbB042
CsGy1G023450	Wax gourd	cgybwgoB045