CsGy1G022510 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G022510
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RING-H2 finger protein ATL63-like
Location	Chr1 : 21518743 .. 21519190 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAAAGATGAAGACGTGTGGTCATGTCATAAAGACTGCACTGACCGGTGGTTTAAGGTGGATGGCCATTGTCCAATTTATCGGACCTTCGTTTGTGTGGTAGTCGTTGATCGCGGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

mRNA sequence

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATTCGTTGATCGCGGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

Coding sequence (CDS)

ATGCCGTTGTCACCGTCGCCTCTATCGCCGTTGCACTCTCCGATCCTACTTTCTGGCTTCTTTATGGTTTTGCTGACAATCTCCATGCTTTTTCTCATTGTGCTATTTTTATTCATTGTCATTTTATGTACAAAACGATCAGCCAAATTTGACGGGGAAGAGTTGCTGGAGAATCTGGACATTGAAGCACCAATTTTTCATTACATCGGAGTTGAAGGCAGCGAACAAGAATTCGTTGATCGCGGTGGAATTGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAATCGAATTTAA

Protein sequence

MPLSPSPLSPLHSPILLSGFFMVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEFVDRGGIAMASSSSLPTPFINRI

Homology

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: KGN65716.1 (hypothetical protein Csa_1G513470 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 99/123 (80.49%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD
Sbjct: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60

Query: 61  IEAPIFHYIGVEGSEQEF-----------------------VDRGGIAMASSSSLPTPFI 101
           IEAPIFHYIGVEGSEQE+                       VDRGGIAMASSSSLPTPFI
Sbjct: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI 120

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: XP_011648512.1 (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 3.7e-25
Identity = 77/149 (51.68%), Postives = 82/149 (55.03%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSPL PLHSPILL GFFMVL+T+S   XXX       LCTKRSAK+DGEE  +NLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLXXXLFLFIAILCTKRSAKYDGEESSDNLD 60

Query: 61  IEAPIFHYIGVEGSEQE------------------------------------------- 101
           IEAPIFHY GVEG EQE                                           
Sbjct: 61  IEAPIFHYSGVEGGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: XP_011659858.1 (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 85/149 (57.05%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSPL PLHSPILL GFFMVLLTIS XXXXXXXXX   LCTKRSAK D EEL ENLD
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMXXXXXXXXXIAILCTKRSAKSDREELSENLD 60

Query: 61  IEAPIFHYIGVEGSEQE------------------------------------------- 101
           IEAPIFHY  VEG EQE                                           
Sbjct: 61  IEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICR 120

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: KGN44779.1 (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 69/149 (46.31%), Postives = 72/149 (48.32%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSP+  LHS ILL GF M LLT+              LC KRSAK DGEEL ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYIGVEGSEQE------------------------------------------- 101
           IEAPIFHY GVEG EQE                                           
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 130

[Close]

BLAST of CsGy1G022510 vs. NCBI nr
Match: XP_011659772.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 69/149 (46.31%), Postives = 72/149 (48.32%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSP+  LHS ILL GF M LLT+              LC KRSAK DGEEL ENLD
Sbjct: 1   MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 60

Query: 61  IEAPIFHYIGVEGSEQE------------------------------------------- 101
           IEAPIFHY GVEG EQE                                           
Sbjct: 61  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 120

[Close]

BLAST of CsGy1G022510 vs. TrEMBL
Match: tr|A0A0A0M0G7|A0A0A0M0G7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G513470 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-34
Identity = 99/123 (80.49%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD
Sbjct: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60

Query: 61  IEAPIFHYIGVEGSEQEF-----------------------VDRGGIAMASSSSLPTPFI 101
           IEAPIFHYIGVEGSEQE+                       VDRGGIAMASSSSLPTPFI
Sbjct: 61  IEAPIFHYIGVEGSEQEYCTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSLPTPFI 120

[Close]

BLAST of CsGy1G022510 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.0e-20
Identity = 69/149 (46.31%), Postives = 72/149 (48.32%), Query Frame = 0


Query: 1   MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
           MPLSPSP+  LHS ILL GF M LLT+              LC KRSAK DGEEL ENLD
Sbjct: 11  MPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLD 70

Query: 61  IEAPIFHYIGVEGSEQE------------------------------------------- 101
           IEAPIFHY GVEG EQE                                           
Sbjct: 71  IEAPIFHYNGVEGDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICR 130

[Close]

BLAST of CsGy1G022510 vs. TrEMBL
Match: tr|A0A0A0LUU6|A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 55/128 (42.97%), Postives = 60/128 (46.88%), Query Frame = 0


Query: 22  MVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQE---- 81
           MVL+T+S             LCTKRSAK+DGEE  +NLDIEAPIFHY GVEG EQE    
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 82  ---------------------------------------------FVDRGGIAMASSSSL 101
                                                         +DRGG AMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

[Close]

BLAST of CsGy1G022510 vs. TrEMBL
Match: tr|A0A0A0LY10|A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 42/77 (54.55%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1  MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
          M LSPSPL  LHS ILL  +   LL  S             LC KRSAK D EE  EN+D
Sbjct: 1  MSLSPSPLPSLHSLILLPRYIEDLLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVD 60

Query: 61 IEAPIFHYIGVEGSEQE 78
          IEAPIFHY G EG EQ+
Sbjct: 61 IEAPIFHYGGDEGGEQD 77

[Close]

BLAST of CsGy1G022510 vs. TrEMBL
Match: tr|A0A1S3C741|A0A1S3C741_CUCME (RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.4e-09
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MPLSPSPLSPLHSPILLSGFFMVLLTISXXXXXXXXXXXXXLCTKRSAKFDGEELLENLD 60
          +PL PSPL PLHSPI+L      LL +SXXXXXXXXXXXXXLC KRSAK D +EL +NL+
Sbjct: 11 LPLPPSPLPPLHSPIVLPRSIEDLLMLSXXXXXXXXXXXXXLCGKRSAKSDEKELSKNLN 70

Query: 61 IEAPIFHYIGVEGSEQE 78
          I+APIFHY G++G +++
Sbjct: 71 IQAPIFHY-GIDGDDEQ 86

The following BLAST results are available for this feature:

BLAST of CsGy1G022510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65716.1	2.6e-34	80.49	hypothetical protein Csa_1G513470 [Cucumis sativus]	[more]
XP_011648512.1	3.7e-25	51.68	PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus]	[more]
XP_011659858.1	5.4e-24	57.05	PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
KGN44779.1	1.4e-19	46.31	hypothetical protein Csa_7G387140 [Cucumis sativus]	[more]
XP_011659772.1	1.4e-19	46.31	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]

BLAST of CsGy1G022510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G022510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G022510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0G7\|A0A0A0M0G7_CUCSA	1.7e-34	80.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G513470 PE=4 SV=1	[more]
tr\|A0A0A0K790\|A0A0A0K790_CUCSA	9.0e-20	46.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1	[more]
tr\|A0A0A0LUU6\|A0A0A0LUU6_CUCSA	1.9e-14	42.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1	[more]
tr\|A0A0A0LY10\|A0A0A0LY10_CUCSA	1.9e-09	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1	[more]
tr\|A0A1S3C741\|A0A1S3C741_CUCME	9.4e-09	64.94	RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G022510.1	CsGy1G022510.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G022510	Cucumber (Gy14) v2	cgybcgybB018
CsGy1G022510	Cucumber (Gy14) v2	cgybcgybB039
CsGy1G022510	Cucurbita maxima (Rimu)	cgybcmaB075
CsGy1G022510	Cucurbita maxima (Rimu)	cgybcmaB083
CsGy1G022510	Cucurbita maxima (Rimu)	cgybcmaB104
CsGy1G022510	Cucurbita maxima (Rimu)	cgybcmaB118
CsGy1G022510	Cucurbita maxima (Rimu)	cgybcmaB122
CsGy1G022510	Cucurbita moschata (Rifu)	cgybcmoB069
CsGy1G022510	Cucurbita moschata (Rifu)	cgybcmoB077
CsGy1G022510	Cucurbita moschata (Rifu)	cgybcmoB098
CsGy1G022510	Cucurbita moschata (Rifu)	cgybcmoB109
CsGy1G022510	Cucurbita moschata (Rifu)	cgybcmoB112
CsGy1G022510	Cucurbita pepo (Zucchini)	cgybcpeB035
CsGy1G022510	Cucurbita pepo (Zucchini)	cgybcpeB071
CsGy1G022510	Cucurbita pepo (Zucchini)	cgybcpeB099
CsGy1G022510	Cucurbita pepo (Zucchini)	cgybcpeB107
CsGy1G022510	Cucurbita pepo (Zucchini)	cgybcpeB136
CsGy1G022510	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G022510	Cucumber (Chinese Long) v2	cgybcuB023
CsGy1G022510	Cucumber (Chinese Long) v2	cgybcuB044
CsGy1G022510	Bottle gourd (USVL1VR-Ls)	cgyblsiB002
CsGy1G022510	Bottle gourd (USVL1VR-Ls)	cgyblsiB027
CsGy1G022510	Melon (DHL92) v3.5.1	cgybmeB023
CsGy1G022510	Melon (DHL92) v3.5.1	cgybmeB059
CsGy1G022510	Melon (DHL92) v3.6.1	cgybmedB007
CsGy1G022510	Melon (DHL92) v3.6.1	cgybmedB021
CsGy1G022510	Melon (DHL92) v3.6.1	cgybmedB053
CsGy1G022510	Watermelon (Charleston Gray)	cgybwcgB004
CsGy1G022510	Watermelon (Charleston Gray)	cgybwcgB031
CsGy1G022510	Watermelon (Charleston Gray)	cgybwcgB044
CsGy1G022510	Watermelon (97103) v1	cgybwmB005
CsGy1G022510	Watermelon (97103) v1	cgybwmB023
CsGy1G022510	Watermelon (97103) v1	cgybwmB071
CsGy1G022510	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G022510	Wild cucumber (PI 183967)	cgybcpiB022
CsGy1G022510	Wild cucumber (PI 183967)	cgybcpiB041
CsGy1G022510	Silver-seed gourd	carcgybB0316
CsGy1G022510	Silver-seed gourd	carcgybB0341
CsGy1G022510	Silver-seed gourd	carcgybB0390
CsGy1G022510	Silver-seed gourd	carcgybB0448
CsGy1G022510	Silver-seed gourd	carcgybB0983
CsGy1G022510	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G022510	Cucumber (Chinese Long) v3	cgybcucB027
CsGy1G022510	Cucumber (Chinese Long) v3	cgybcucB048
CsGy1G022510	Watermelon (97103) v2	cgybwmbB015
CsGy1G022510	Watermelon (97103) v2	cgybwmbB028
CsGy1G022510	Watermelon (97103) v2	cgybwmbB042
CsGy1G022510	Wax gourd	cgybwgoB016
CsGy1G022510	Wax gourd	cgybwgoB045