CsGy1G021340 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G021340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Protein DETOXIFICATION
Location	Chr1 : 20074485 .. 20074709 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCTTATATTATTCTGTTCGTCATCTCCTTCTGCAACACTAAATATATTGAAAGTTTTCCTTCTCAAACAAATGATACTTTCTGACAGCATAAGGGTCTCAAATGAGTTGGGAGCAGGCAATTTTGACAAAGCCAAAACTACCATGTTTGCAACTCTCAAGCTTTCTGTTCTCCTTCCTCTGCTGGTTGTTTTAGCACTTGCATTTGGTCATAACACCTAG

mRNA sequence

ATGTACCTTATATTATTCTGTTCGTCATCTCCTTCTGCAACACTAAATATATTGAAAGTTTTCCTTCTCAAACAAATGATACTTTCTGACAGCATAAGGGTCTCAAATGAGTTGGGAGCAGGCAATTTTGACAAAGCCAAAACTACCATGTTTGCAACTCTCAAGCTTTCTGTTCTCCTTCCTCTGCTGGTTGTTTTAGCACTTGCATTTGGTCATAACACCTAG

Coding sequence (CDS)

ATGTACCTTATATTATTCTGTTCGTCATCTCCTTCTGCAACACTAAATATATTGAAAGTTTTCCTTCTCAAACAAATGATACTTTCTGACAGCATAAGGGTCTCAAATGAGTTGGGAGCAGGCAATTTTGACAAAGCCAAAACTACCATGTTTGCAACTCTCAAGCTTTCTGTTCTCCTTCCTCTGCTGGTTGTTTTAGCACTTGCATTTGGTCATAACACCTAG

Protein sequence

MYLILFCSSSPSATLNILKVFLLKQMILSDSIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHNT

Homology

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BLAST of CsGy1G021340 vs. NCBI nr
Match: XP_008456028.1 (PREDICTED: protein DETOXIFICATION 18-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHNT 75
           S RVSNELGAGNFDKAKT MFATLKLSVLLPLLVVLALAFGHNT
Sbjct: 315 STRVSNELGAGNFDKAKTAMFATLKLSVLLPLLVVLALAFGHNT 358

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BLAST of CsGy1G021340 vs. NCBI nr
Match: KGN57628.1 (hypothetical protein Csa_3G233980 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31 SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHNT 75
          S RVSNELGAGNFDKAKT MFATLKLSVLLPLLVVLALAFGHNT
Sbjct: 51 STRVSNELGAGNFDKAKTAMFATLKLSVLLPLLVVLALAFGHNT 94

[Close]

BLAST of CsGy1G021340 vs. NCBI nr
Match: XP_022923002.1 (protein DETOXIFICATION 18-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 29  SDSIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHNT 75
           + S RVSNELGAGN D+A+T MF TLKL+VL+PLLVVLALAFG +T
Sbjct: 313 ASSTRVSNELGAGNLDRARTAMFVTLKLAVLVPLLVVLALAFGQST 358

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BLAST of CsGy1G021340 vs. NCBI nr
Match: XP_023552678.1 (protein DETOXIFICATION 18-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 29  SDSIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHNT 75
           + S RVSNELGAGN D+A+T MF TLKL+VL+PLLVVLALAFG +T
Sbjct: 313 ASSTRVSNELGAGNLDRARTAMFVTLKLAVLVPLLVVLALAFGQST 358

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BLAST of CsGy1G021340 vs. NCBI nr
Match: XP_022142776.1 (protein DETOXIFICATION 18-like [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 31  SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHNT 75
           S RVSNEL A N D+AKT MFATLKLS LLPLLVVLALAFGH T
Sbjct: 294 STRVSNELRADNLDRAKTAMFATLKLSFLLPLLVVLALAFGHTT 337

[Close]

BLAST of CsGy1G021340 vs. TAIR10
Match: AT3G23550.1 (MATE efflux family protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.1e-04
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 31  SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHN 74
           S RVSNELGAGN   AK     ++KLS++L L VV+A+  GH+
Sbjct: 316 STRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIAILVGHD 358

[Close]

BLAST of CsGy1G021340 vs. TAIR10
Match: AT3G23560.1 (MATE efflux family protein)

HSP 1 Score: 42.0 bits (97), Expect = 1.9e-04
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 31  SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHN 74
           S RVSNELGAGN   AK     ++KLS++L L VV+ L  GH+
Sbjct: 324 STRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLLVGHD 366

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BLAST of CsGy1G021340 vs. TrEMBL
Match: tr|A0A1S3C2Z1|A0A1S3C2Z1_CUCME (Protein DETOXIFICATION OS=Cucumis melo OX=3656 GN=LOC103496079 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31  SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHNT 75
           S RVSNELGAGNFDKAKT MFATLKLSVLLPLLVVLALAFGHNT
Sbjct: 315 STRVSNELGAGNFDKAKTAMFATLKLSVLLPLLVVLALAFGHNT 358

[Close]

BLAST of CsGy1G021340 vs. TrEMBL
Match: tr|A0A0A0L783|A0A0A0L783_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G233980 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 31 SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHNT 75
          S RVSNELGAGNFDKAKT MFATLKLSVLLPLLVVLALAFGHNT
Sbjct: 51 STRVSNELGAGNFDKAKTAMFATLKLSVLLPLLVVLALAFGHNT 94

[Close]

BLAST of CsGy1G021340 vs. TrEMBL
Match: tr|A0A2K1YIX1|A0A2K1YIX1_POPTR (Protein DETOXIFICATION (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_011G117400v3 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-08
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 7   CSSSPSATLNILKVFLLKQMILSDSIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVL 66
           C+S  SAT       +LK  I  +S RVSNELGAGN DKAK  M  TLKLSVLL LL+VL
Sbjct: 310 CTSGLSAT-------ILKLRISVNSTRVSNELGAGNPDKAKQAMATTLKLSVLLALLIVL 369

Query: 67  ALAFGHN 74
           ALA GH+
Sbjct: 370 ALATGHD 369

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BLAST of CsGy1G021340 vs. TrEMBL
Match: tr|A0A251PNM5|A0A251PNM5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G206700 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 36/43 (83.72%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 31  SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHN 74
           S RVSNELGAGN DKAK  M  TLKLSVLL LLVVLALAFGHN
Sbjct: 266 STRVSNELGAGNPDKAKKAMAVTLKLSVLLGLLVVLALAFGHN 308

[Close]

BLAST of CsGy1G021340 vs. TrEMBL
Match: tr|M5X4M8|M5X4M8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020761mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 36/43 (83.72%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 31  SIRVSNELGAGNFDKAKTTMFATLKLSVLLPLLVVLALAFGHN 74
           S RVSNELGAGN DKAK  M  TLKLSVLL LLVVLALAFGHN
Sbjct: 252 STRVSNELGAGNPDKAKKAMAVTLKLSVLLGLLVVLALAFGHN 294

The following BLAST results are available for this feature:

BLAST of CsGy1G021340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456028.1	1.6e-12	95.45	PREDICTED: protein DETOXIFICATION 18-like [Cucumis melo]	[more]
KGN57628.1	1.6e-12	95.45	hypothetical protein Csa_3G233980 [Cucumis sativus]	[more]
XP_022923002.1	1.4e-08	73.91	protein DETOXIFICATION 18-like isoform X1 [Cucurbita moschata]	[more]
XP_023552678.1	1.4e-08	73.91	protein DETOXIFICATION 18-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022142776.1	1.8e-08	81.82	protein DETOXIFICATION 18-like [Momordica charantia]	[more]

BLAST of CsGy1G021340 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23550.1	1.1e-04	53.49	MATE efflux family protein	[more]
AT3G23560.1	1.9e-04	53.49	MATE efflux family protein	[more]

BLAST of CsGy1G021340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G021340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2Z1\|A0A1S3C2Z1_CUCME	1.0e-12	95.45	Protein DETOXIFICATION OS=Cucumis melo OX=3656 GN=LOC103496079 PE=3 SV=1	[more]
tr\|A0A0A0L783\|A0A0A0L783_CUCSA	1.0e-12	95.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G233980 PE=4 SV=1	[more]
tr\|A0A2K1YIX1\|A0A2K1YIX1_POPTR	4.5e-08	61.19	Protein DETOXIFICATION (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_011G11...	[more]
tr\|A0A251PNM5\|A0A251PNM5_PRUPE	7.7e-08	83.72	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G206700 PE=4 SV=1	[more]
tr\|M5X4M8\|M5X4M8_PRUPE	7.7e-08	83.72	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020761mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006855	drug transmembrane transport
GO:0055085	transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015238	drug transmembrane transporter activity
GO:0015297	antiporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR002528	MATE_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0015238	drug transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G021340.1	CsGy1G021340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002528	Multi antimicrobial extrusion protein	PFAM	PF01554	MatE	coord: 29..71 e-value: 2.4E-6 score: 27.2
None	No IPR available	PANTHER	PTHR11206:SF78	PROTEIN DETOXIFICATION 18-RELATED	coord: 27..73
None	No IPR available	PANTHER	PTHR11206	MULTIDRUG RESISTANCE PROTEIN	coord: 27..73

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G021340	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G021340	Cucumber (Chinese Long) v3	cgybcucB047
CsGy1G021340	Watermelon (97103) v2	cgybwmbB012
CsGy1G021340	Watermelon (97103) v2	cgybwmbB031
CsGy1G021340	Watermelon (97103) v2	cgybwmbB033
CsGy1G021340	Wax gourd	cgybwgoB021
CsGy1G021340	Wax gourd	cgybwgoB026
CsGy1G021340	Cucumber (Gy14) v2	cgybcgybB038
CsGy1G021340	Cucurbita maxima (Rimu)	cgybcmaB062
CsGy1G021340	Cucurbita maxima (Rimu)	cgybcmaB094
CsGy1G021340	Cucurbita maxima (Rimu)	cgybcmaB127
CsGy1G021340	Cucurbita maxima (Rimu)	cgybcmaB141
CsGy1G021340	Cucurbita moschata (Rifu)	cgybcmoB059
CsGy1G021340	Cucurbita moschata (Rifu)	cgybcmoB089
CsGy1G021340	Cucurbita moschata (Rifu)	cgybcmoB117
CsGy1G021340	Cucurbita moschata (Rifu)	cgybcmoB132
CsGy1G021340	Cucurbita pepo (Zucchini)	cgybcpeB006
CsGy1G021340	Cucurbita pepo (Zucchini)	cgybcpeB022
CsGy1G021340	Cucurbita pepo (Zucchini)	cgybcpeB068
CsGy1G021340	Cucurbita pepo (Zucchini)	cgybcpeB079
CsGy1G021340	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G021340	Cucumber (Chinese Long) v2	cgybcuB043
CsGy1G021340	Bottle gourd (USVL1VR-Ls)	cgyblsiB028
CsGy1G021340	Bottle gourd (USVL1VR-Ls)	cgyblsiB013
CsGy1G021340	Melon (DHL92) v3.5.1	cgybmeB011
CsGy1G021340	Melon (DHL92) v3.5.1	cgybmeB075
CsGy1G021340	Melon (DHL92) v3.6.1	cgybmedB010
CsGy1G021340	Melon (DHL92) v3.6.1	cgybmedB070
CsGy1G021340	Watermelon (Charleston Gray)	cgybwcgB024
CsGy1G021340	Watermelon (Charleston Gray)	cgybwcgB034
CsGy1G021340	Watermelon (97103) v1	cgybwmB011
CsGy1G021340	Watermelon (97103) v1	cgybwmB052
CsGy1G021340	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G021340	Wild cucumber (PI 183967)	cgybcpiB040
CsGy1G021340	Silver-seed gourd	carcgybB0160
CsGy1G021340	Silver-seed gourd	carcgybB0552
CsGy1G021340	Silver-seed gourd	carcgybB0789
CsGy1G021340	Silver-seed gourd	carcgybB0943