CsGy1G020460 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G020460
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transmembrane protein 230-like
Location	Chr1 : 19161192 .. 19162399 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAACGGATCAAATATTAATTAAACAAAAACAAATGGATTATCTTAAACTTCAATTTAATATTCCTTTTGTTTGAATATAATTAAATAATTCATTAATTAAGACTTTAAATGTTTTTAATTTCCTTACACGCTGACGTGGAAGTTTTTGCCTTTCTTCTCACTCAATCCTTCGCTCAGAGTCAAAATCAGGCAGAGAGCTTTTCCCTTCTCTTTGCTTCAATTATCGTATTTCCACCGTCGCATTGCCGCCGCCGCCGCCACTACCTCCACCTCCCTTTCCTTCACCCAATTCCGACACTCTTTTTCTACAGATCCAACCTCCAACCCCTTCTTCTCCCAGAAATGGCGTATGTGGATCATGCGTTTTCCATAACAGATGAAGACATTATGATGGATTCTCCATTCACCGTCAATAATCGCCCTCCTATCAAAGAGATCGCTCTTGCCGTTTCTCTTCTCGTTTTTGGCATGATTGGAATCATTGTTGGTGCCTTCATGGCCAGTAATCGGGTCGGTGGTGATCGTGTTCACGGTACTCTTCTTTTTCCTTTATTATTTTTTCCTGTTCTTCCTCCAATTTTGCCCTAGTTCGTTCGAGGGTTAATTTTTGGTTTTGTTCTTCAAATAATTTCAGGGGTGTTTTTCTCGTTGTTGGGAGGTCTCCTGTTTATTCCAGGCTTCTATTACACAAGGATTGCCTATTATGCTTATAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCCCCTGTCTAAACTCTCAAAGTTCAACCAGTTCTTTACATTTGTACAGATTTTCTTCCACCTTCCCCTTTCTATGAAACTGTATCCGTTTACTATAGTTGAAGAGTGAGGAATTCTATGTGGATTTGCGTTGTGCATTATCAAGATAATTCTTCTTCTGTTTCTTGAAGTTTTTCTTTTTAGTGGTCGTTGACATAGCCATTTCAATGAATGAAGGCCTATATATAATATAATATACACAGTAAATTTCTGATCAGGTTTTTCTATCTCTATAATTTGAAAATTTCCTACTTTTTTGCCCTTGTCTGTTTGTTTGTTGGTTTGAACACATAGTTTATGATGTATAGGAAACAATGAATTAAAAGAACTAAATTAGCTTGCTAGTTTCAAGTCTCTTCTGGACTTGGCTTATCTAGCCCTAGGAGAGATACTAAGGAGGTTTTTATGGAAATTAGTTTATAC

mRNA sequence

TTGAACGGATCAAATATTAATTAAACAAAAACAAATGGATTATCTTAAACTTCAATTTAATATTCCTTTTGTTTGAATATAATTAAATAATTCATTAATTAAGACTTTAAATGTTTTTAATTTCCTTACACGCTGACGTGGAAGTTTTTGCCTTTCTTCTCACTCAATCCTTCGCTCAGAGTCAAAATCAGGCAGAGAGCTTTTCCCTTCTCTTTGCTTCAATTATCGTATTTCCACCGTCGCATTGCCGCCGCCGCCGCCACTACCTCCACCTCCCTTTCCTTCACCCAATTCCGACACTCTTTTTCTACAGATCCAACCTCCAACCCCTTCTTCTCCCAGAAATGGCGTATGTGGATCATGCGTTTTCCATAACAGATGAAGACATTATGATGGATTCTCCATTCACCGTCAATAATCGCCCTCCTATCAAAGAGATCGCTCTTGCCGTTTCTCTTCTCGTTTTTGGCATGATTGGAATCATTGTTGGTGCCTTCATGGCCAGTAATCGGGTCGGTGGTGATCGTGTTCACGGGGTGTTTTTCTCGTTGTTGGGAGGTCTCCTGTTTATTCCAGGCTTCTATTACACAAGGATTGCCTATTATGCTTATAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCCCCTGTCTAAACTCTCAAAGTTCAACCAGTTCTTTACATTTGTACAGATTTTCTTCCACCTTCCCCTTTCTATGAAACTGTATCCGTTTACTATAGTTGAAGAGTGAGGAATTCTATGTGGATTTGCGTTGTGCATTATCAAGATAATTCTTCTTCTGTTTCTTGAAGTTTTTCTTTTTAGTGGTCGTTGACATAGCCATTTCAATGAATGAAGGCCTATATATAATATAATATACACAGTAAATTTCTGATCAGGTTTTTCTATCTCTATAATTTGAAAATTTCCTACTTTTTTGCCCTTGTCTGTTTGTTTGTTGGTTTGAACACATAGTTTATGATGTATAGGAAACAATGAATTAAAAGAACTAAATTAGCTTGCTAGTTTCAAGTCTCTTCTGGACTTGGCTTATCTAGCCCTAGGAGAGATACTAAGGAGGTTTTTATGGAAATTAGTTTATAC

Coding sequence (CDS)

ATGTTTTTAATTTCCTTACACGCTGACGTGGAAGTTTTTGCCTTTCTTCTCACTCAATCCTTCGCTCAGAGTCAAAATCAGGCAGAGAGCTTTTCCCTTCTCTTTGCTTCAATTATCGTATTTCCACCGTCGCATTGCCGCCGCCGCCGCCACTACCTCCACCTCCCTTTCCTTCACCCAATTCCGACACTCTTTTTCTACAGATCCAACCTCCAACCCCTTCTTCTCCCAGAAATGGCGTATGTGGATCATGCGTTTTCCATAACAGATGAAGACATTATGATGGATTCTCCATTCACCGTCAATAATCGCCCTCCTATCAAAGAGATCGCTCTTGCCGTTTCTCTTCTCGTTTTTGGCATGATTGGAATCATTGTTGGTGCCTTCATGGCCAGTAATCGGGTCGGTGGTGATCGTGTTCACGGGGTGTTTTTCTCGTTGTTGGGAGGTCTCCTGTTTATTCCAGGCTTCTATTACACAAGGATTGCCTATTATGCTTATAAGGGTTACAAGGGTTTCTCCTTCTCCAACATACCCCCTGTCTAA

Protein sequence

MFLISLHADVEVFAFLLTQSFAQSQNQAESFSLLFASIIVFPPSHCRRRRHYLHLPFLHPIPTLFFYRSNLQPLLLPEMAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGDRVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV

Homology

[Close]

BLAST of CsGy1G020460 vs. NCBI nr
Match: XP_004146339.1 (PREDICTED: transmembrane protein 230-like [Cucumis sativus] >KGN65495.1 hypothetical protein Csa_1G426960 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 4.6e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. NCBI nr
Match: XP_008453547.1 (PREDICTED: transmembrane protein 230-like [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. NCBI nr
Match: XP_022931504.1 (transmembrane protein 230-like [Cucurbita moschata] >XP_022972056.1 transmembrane protein 230-like [Cucurbita maxima] >XP_023529399.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.5 bits (506), Expect = 9.6e-48
Identity = 99/103 (96.12%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLL FGMIGIIVG FMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLFFGMIGIIVGIFMASNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HGVFFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. NCBI nr
Match: XP_022987351.1 (transmembrane protein 230-like [Cucurbita maxima])

HSP 1 Score: 197.2 bits (500), Expect = 4.8e-47
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSI DEDI+MDSPF VNNRPPIKEIALAVSLLVFGMIGI+VGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSIADEDIVMDSPFPVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HGVFFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. NCBI nr
Match: XP_022921334.1 (transmembrane protein 230-like [Cucurbita moschata])

HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSI DEDI+MDSPF VNN+PPIKEIALAVSLLVFGMIGI+VGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSIADEDIVMDSPFPVNNQPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HGVFFSLLG LLFIPG YYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGALLFIPGSYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. TAIR10
Match: AT4G29850.1 (Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-44
Identity = 85/103 (82.52%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSITDEDIM+++ +TVNNRPP+KEIALAV+LLVFG +GI+ G FMA NRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMIETSYTVNNRPPVKEIALAVALLVFGTLGIVSGFFMAYNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HG+FF +LG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. TAIR10
Match: AT2G19350.1 (Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 167.9 bits (424), Expect = 5.6e-42
Identity = 80/103 (77.67%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSI+DED+M+ + +TV+NRPP+KEI+LAV LLVFG +GI++G FMA NRVGGD
Sbjct: 1   MAYVDHAFSISDEDLMIGTSYTVSNRPPVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HG+FF +LG LLFIPGFYYTRIAYYAYKGYKGFSFSNIP V
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPSV 103

[Close]

BLAST of CsGy1G020460 vs. TAIR10
Match: AT3G29170.1 (Eukaryotic protein of unknown function (DUF872))

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 103 NRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGDRVHGVFFSLLGGLLFIPGFYYTRI 162
           +R P K IALAV LL  G + +++  F+    + GD   G    +LG L F+PGFY TRI
Sbjct: 43  DRVPWKSIALAVFLLFLGCLLLLLSFFIFIGHMEGDSSQGYALLVLGILTFLPGFYETRI 102

Query: 163 AYYAYKGYKGFSFSNIP 180
           AYY+++G +G+ F+ IP
Sbjct: 103 AYYSWRGAEGYRFAAIP 119

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BLAST of CsGy1G020460 vs. Swiss-Prot
Match: sp|Q5ZLH4|TM230_CHICK (Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-10
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 106 PIKEIALAVSLLVFGMIGIIVGAFMASNRV---GGDRVHGVFFSLLGGLLFIPGFYYTRI 165
           P K IALAV L + G   II+GA + +  +   G DR   V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVL--IIGILVFLPGFYHLRI 101

Query: 166 AYYAYKGYKGFSFSNIP 180
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CsGy1G020460 vs. Swiss-Prot
Match: sp|Q5R8X3|TM230_PONAB (Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-10
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 106 PIKEIALAVSLLVFGMIGIIVGAFMASNRV---GGDRVHGVFFSLLGGLLFIPGFYYTRI 165
           P K IALA  L + G   II+G+ + S  +   G DR   V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATGLFLIGAFLIIIGSLLLSGYISKGGADRAIPVL--IIGILVFLPGFYHLRI 101

Query: 166 AYYAYKGYKGFSFSNIP 180
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CsGy1G020460 vs. Swiss-Prot
Match: sp|Q96A57|TM230_HUMAN (Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 106 PIKEIALAVSLLVFGMIGIIVGAFMASNRV---GGDRVHGVFFSLLGGLLFIPGFYYTRI 165
           P K IALA  L + G   II+G+ + S  +   G DR   V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 166 AYYAYKGYKGFSFSNIP 180
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CsGy1G020460 vs. Swiss-Prot
Match: sp|Q8CIB6|TM230_MOUSE (Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 106 PIKEIALAVSLLVFGMIGIIVGAFMASNRV---GGDRVHGVFFSLLGGLLFIPGFYYTRI 165
           P K IALA  L + G   II+G+ + S  +   G DR   V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 166 AYYAYKGYKGFSFSNIP 180
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CsGy1G020460 vs. Swiss-Prot
Match: sp|Q5BJP5|TM230_RAT (Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 106 PIKEIALAVSLLVFGMIGIIVGAFMASNRV---GGDRVHGVFFSLLGGLLFIPGFYYTRI 165
           P K IALA  L + G   II+G+ + S  +   G DR   V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 166 AYYAYKGYKGFSFSNIP 180
           AYYA KGY+G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

[Close]

BLAST of CsGy1G020460 vs. TrEMBL
Match: tr|A0A0A0LUC1|A0A0A0LUC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426960 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. TrEMBL
Match: tr|A0A1S3BWL2|A0A1S3BWL2_CUCME (transmembrane protein 230-like OS=Cucumis melo OX=3656 GN=LOC103494229 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.9e-50
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. TrEMBL
Match: tr|A0A068U364|A0A068U364_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00041466001 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.8e-43
Identity = 85/103 (82.52%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSI+DEDIMMD+P+TVNNRPPIKEIALAV+LLVFG +GI++G  MA N+VGGD
Sbjct: 1   MAYVDHAFSISDEDIMMDTPYTVNNRPPIKEIALAVALLVFGTLGIVLGVIMAVNKVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HG+FF++LGG+LF+PGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGLFFAILGGILFLPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. TrEMBL
Match: tr|A0A2P5BBH7|A0A2P5BBH7_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_326970 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.1e-43
Identity = 86/103 (83.50%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSITDEDIMM++ +TVNNRPP+KEIALAV+LLVFG +GII+G FMA NRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMETSYTVNNRPPVKEIALAVALLVFGTLGIILGIFMAYNRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HG+FF++LG +LFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGLFFAILGAILFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

[Close]

BLAST of CsGy1G020460 vs. TrEMBL
Match: tr|A0A0J8E2T6|A0A0J8E2T6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_6g155360 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.1e-43
Identity = 84/103 (81.55%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 79  MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 138
           MAYVDHAFSITDEDIMMD+ + +NN+PPI+EIALAVSLLVFG+IGI++G  MA+NRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDNSYAINNKPPIREIALAVSLLVFGVIGIVLGILMAANRVGGD 60

Query: 139 RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 182
           R HG+FF++LGG+LF+PGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 61  RAHGLFFAILGGILFLPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

The following BLAST results are available for this feature:

BLAST of CsGy1G020460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146339.1	4.6e-50	100.00	PREDICTED: transmembrane protein 230-like [Cucumis sativus] >KGN65495.1 hypothet...	[more]
XP_008453547.1	1.3e-49	99.03	PREDICTED: transmembrane protein 230-like [Cucumis melo]	[more]
XP_022931504.1	9.6e-48	96.12	transmembrane protein 230-like [Cucurbita moschata] >XP_022972056.1 transmembran...	[more]
XP_022987351.1	4.8e-47	94.17	transmembrane protein 230-like [Cucurbita maxima]	[more]
XP_022921334.1	1.2e-45	92.23	transmembrane protein 230-like [Cucurbita moschata]	[more]

BLAST of CsGy1G020460 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29850.1	1.2e-44	82.52	Eukaryotic protein of unknown function (DUF872)	[more]
AT2G19350.1	5.6e-42	77.67	Eukaryotic protein of unknown function (DUF872)	[more]
AT3G29170.1	1.1e-10	44.16	Eukaryotic protein of unknown function (DUF872)	[more]

BLAST of CsGy1G020460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5ZLH4\|TM230_CHICK	9.3e-10	48.05	Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1	[more]
sp\|Q5R8X3\|TM230_PONAB	9.3e-10	46.75	Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1	[more]
sp\|Q96A57\|TM230_HUMAN	1.6e-09	46.75	Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1	[more]
sp\|Q8CIB6\|TM230_MOUSE	1.6e-09	46.75	Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1	[more]
sp\|Q5BJP5\|TM230_RAT	1.6e-09	46.75	Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1	[more]

BLAST of CsGy1G020460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUC1\|A0A0A0LUC1_CUCSA	3.1e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426960 PE=4 SV=1	[more]
tr\|A0A1S3BWL2\|A0A1S3BWL2_CUCME	8.9e-50	99.03	transmembrane protein 230-like OS=Cucumis melo OX=3656 GN=LOC103494229 PE=4 SV=1	[more]
tr\|A0A068U364\|A0A068U364_COFCA	2.8e-43	82.52	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00041466001 PE=4 ...	[more]
tr\|A0A2P5BBH7\|A0A2P5BBH7_9ROSA	8.1e-43	83.50	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_326970 PE=4 S...	[more]
tr\|A0A0J8E2T6\|A0A0J8E2T6_BETVU	8.1e-43	81.55	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_6g15536...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008590	DUF872_TM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G020460.1	CsGy1G020460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008590	Protein of unknown function DUF872, transmembrane	PFAM	PF05915	DUF872	coord: 97..179 e-value: 2.5E-16 score: 59.8
None	No IPR available	PANTHER	PTHR15664	C20ORF30 PROTEIN	coord: 79..181
None	No IPR available	PANTHER	PTHR15664:SF6	EXPRESSED PROTEIN	coord: 79..181

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G020460	Cla018867	Watermelon (97103) v1	cgybwmB080
CsGy1G020460	Csa1G426960	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G020460	MELO3C017417	Melon (DHL92) v3.5.1	cgybmeB039
CsGy1G020460	ClCG06G013730	Watermelon (Charleston Gray)	cgybwcgB064
CsGy1G020460	CSPI01G20660	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G020460	CmaCh11G003490	Cucurbita maxima (Rimu)	cgybcmaB037
CsGy1G020460	Lsi06G012170	Bottle gourd (USVL1VR-Ls)	cgyblsiB056
CsGy1G020460	MELO3C017417.2	Melon (DHL92) v3.6.1	cgybmedB033
CsGy1G020460	CsaV3_1G031980	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G020460	Cla97C06G123200	Watermelon (97103) v2	cgybwmbB064
CsGy1G020460	Bhi02G000162	Wax gourd	cgybwgoB099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G020460	Cucumber (Gy14) v2	cgybcgybB009
CsGy1G020460	Cucurbita maxima (Rimu)	cgybcmaB015
CsGy1G020460	Cucurbita maxima (Rimu)	cgybcmaB041
CsGy1G020460	Cucurbita maxima (Rimu)	cgybcmaB056
CsGy1G020460	Cucurbita moschata (Rifu)	cgybcmoB015
CsGy1G020460	Cucurbita moschata (Rifu)	cgybcmoB038
CsGy1G020460	Cucurbita moschata (Rifu)	cgybcmoB052
CsGy1G020460	Cucurbita pepo (Zucchini)	cgybcpeB042
CsGy1G020460	Cucurbita pepo (Zucchini)	cgybcpeB110
CsGy1G020460	Cucurbita pepo (Zucchini)	cgybcpeB145
CsGy1G020460	Cucumber (Chinese Long) v2	cgybcuB018
CsGy1G020460	Bottle gourd (USVL1VR-Ls)	cgyblsiB009
CsGy1G020460	Melon (DHL92) v3.5.1	cgybmeB067
CsGy1G020460	Melon (DHL92) v3.6.1	cgybmedB063
CsGy1G020460	Watermelon (Charleston Gray)	cgybwcgB009
CsGy1G020460	Watermelon (97103) v1	cgybwmB076
CsGy1G020460	Wild cucumber (PI 183967)	cgybcpiB016
CsGy1G020460	Silver-seed gourd	carcgybB0591
CsGy1G020460	Silver-seed gourd	carcgybB0779
CsGy1G020460	Cucumber (Chinese Long) v3	cgybcucB016
CsGy1G020460	Watermelon (97103) v2	cgybwmbB023