CsGy1G020020 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G020020
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Golgin candidate 5
Location	Chr1 : 18776792 .. 18777205 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCTACGTATCCAACACTCTAGGCTTCAGGTTGCTTTGGATTTATTTTGAACTGTATACTGTTTGTGCAGTATATGGACATGCCTGTATTGAGTTTTTATTGAATCCACAGGAAGCAGAAGCGAAAGCTGCTGCTGCTGAAGAAAGAGAGCGATCTATAAATGAACGCTTGTCCCAAACCTTATCTAGAATTAATGTTCTGGAGGCGCAGGTTCTTATTGCTAATGATTTTCATCTTTCTCCTTTTTTTTTCAAATATTATCTAATAGCAGAACTCTTTTGCAGGTTTCATGCCTTAGAGCAGAGCAGACTCAATTAAGCAAAACCCTTGAGAAGGAGAGGCAGAGAGCAGCTGAAATCAGGCAGGAGTATCTGGCAGCAAAAGAGGAAGCTAAGCAATTTAAAGTATGA

mRNA sequence

ATGCGTCTACGTATCCAACACTCTAGGCTTCAGGAAGCAGAAGCGAAAGCTGCTGCTGCTGAAGAAAGAGAGCGATCTATAAATGAACGCTTGTCCCAAACCTTATCTAGAATTAATGTTCTGGAGGCGCAGGTTTCATGCCTTAGAGCAGAGCAGACTCAATTAAGCAAAACCCTTGAGAAGGAGAGGCAGAGAGCAGCTGAAATCAGGCAGGAGTATCTGGCAGCAAAAGAGGAAGCTAAGCAATTTAAAGTATGA

Coding sequence (CDS)

ATGCGTCTACGTATCCAACACTCTAGGCTTCAGGAAGCAGAAGCGAAAGCTGCTGCTGCTGAAGAAAGAGAGCGATCTATAAATGAACGCTTGTCCCAAACCTTATCTAGAATTAATGTTCTGGAGGCGCAGGTTTCATGCCTTAGAGCAGAGCAGACTCAATTAAGCAAAACCCTTGAGAAGGAGAGGCAGAGAGCAGCTGAAATCAGGCAGGAGTATCTGGCAGCAAAAGAGGAAGCTAAGCAATTTAAAGTATGA

Protein sequence

MRLRIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRAAEIRQEYLAAKEEAKQFKV

Homology

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: KGN65446.1 (hypothetical protein Csa_1G423040 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MRLRIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE 60
          MRLRIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE
Sbjct: 1  MRLRIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE 60

Query: 61 KERQRAAEIRQEYLAAKEEAKQFKV 86
          KERQRAAEIRQEYLAAKEEAKQFKV
Sbjct: 61 KERQRAAEIRQEYLAAKEEAKQFKV 85

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: XP_022928026.1 (golgin candidate 5-like [Cucurbita moschata])

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-20
Identity = 63/77 (81.82%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAEAK        + +NERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER
Sbjct: 686 RSLNSRLQEAEAKAAAAEEREQFVNERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 745

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAEIRQEYLAAKEEA
Sbjct: 746 QRAAEIRQEYLAAKEEA 762

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: XP_022971745.1 (golgin candidate 5-like [Cucurbita maxima])

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-20
Identity = 63/77 (81.82%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAEAK        + +NERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER
Sbjct: 681 RSLNSRLQEAEAKAAAAEEREQFVNERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 740

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAEIRQEYLAAKEEA
Sbjct: 741 QRAAEIRQEYLAAKEEA 757

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: XP_023512322.1 (golgin candidate 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-20
Identity = 63/77 (81.82%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAEAK        + +NERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER
Sbjct: 688 RSLNSRLQEAEAKAAAAEEREQFVNERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 747

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAEIRQEYLAAKEEA
Sbjct: 748 QRAAEIRQEYLAAKEEA 764

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: PNX57139.1 (golgin candidate 5-like protein, partial [Trifolium pratense])

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-20
Identity = 62/77 (80.52%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 4  RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
          R  +SRLQEAEAK        RS+N+RLSQTLSRINVLEAQ+SCLRAEQTQLSKTLEKER
Sbjct: 11 RSLNSRLQEAEAKAATAEERERSVNDRLSQTLSRINVLEAQISCLRAEQTQLSKTLEKER 70

Query: 64 QRAAEIRQEYLAAKEEA 81
          QRAAE RQEYLAAKEEA
Sbjct: 71 QRAAESRQEYLAAKEEA 87

[Close]

BLAST of CsGy1G020020 vs. TAIR10
Match: AT1G79830.4 (golgin candidate 5)

HSP 1 Score: 63.2 bits (152), Expect = 9.2e-11
Identity = 48/77 (62.34%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAE+K   XXXXX                  AQ+SCLRAEQ QLSK+LEKER
Sbjct: 666 RTLNSRLQEAESKAATXXXXXXXXXXXXXXXXXXXXXXXAQLSCLRAEQGQLSKSLEKER 725

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 726 QRAAENRQEYLAAKEEA 742

[Close]

BLAST of CsGy1G020020 vs. Swiss-Prot
Match: sp|Q0WVL7|GOGC5_ARATH (Golgin candidate 5 OS=Arabidopsis thaliana OX=3702 GN=GC5 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-09
Identity = 48/77 (62.34%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAE+K   XXXXX                  AQ+SCLRAEQ QLSK+LEKER
Sbjct: 646 RTLNSRLQEAESKAATXXXXXXXXXXXXXXXXXXXXXXXAQLSCLRAEQGQLSKSLEKER 705

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 706 QRAAENRQEYLAAKEEA 722

[Close]

BLAST of CsGy1G020020 vs. TrEMBL
Match: tr|A0A0A0LZR9|A0A0A0LZR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423040 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.5e-28
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MRLRIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE 60
          MRLRIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE
Sbjct: 1  MRLRIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE 60

Query: 61 KERQRAAEIRQEYLAAKEEAKQFKV 86
          KERQRAAEIRQEYLAAKEEAKQFKV
Sbjct: 61 KERQRAAEIRQEYLAAKEEAKQFKV 85

[Close]

BLAST of CsGy1G020020 vs. TrEMBL
Match: tr|A0A2K3JSX1|A0A2K3JSX1_TRIPR (Golgin candidate 5-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g058544 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 62/77 (80.52%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 4  RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
          R  +SRLQEAEAK        RS+N+RLSQTLSRINVLEAQ+SCLRAEQTQLSKTLEKER
Sbjct: 11 RSLNSRLQEAEAKAATAEERERSVNDRLSQTLSRINVLEAQISCLRAEQTQLSKTLEKER 70

Query: 64 QRAAEIRQEYLAAKEEA 81
          QRAAE RQEYLAAKEEA
Sbjct: 71 QRAAESRQEYLAAKEEA 87

[Close]

BLAST of CsGy1G020020 vs. TrEMBL
Match: tr|A0A072VBZ6|A0A072VBZ6_MEDTR (Coiled-coil vesicle tethering protein, putative OS=Medicago truncatula OX=3880 GN=11425783 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-20
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAEAK        RS+N+RLSQTLSRINVLEAQ+SCLRAEQTQLS+TLEKER
Sbjct: 600 RTLNSRLQEAEAKAATAEERERSVNDRLSQTLSRINVLEAQISCLRAEQTQLSRTLEKER 659

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 660 QRAAESRQEYLAAKEEA 676

[Close]

BLAST of CsGy1G020020 vs. TrEMBL
Match: tr|Q2HU52|Q2HU52_MEDTR (Coiled-coil vesicle tethering protein, putative OS=Medicago truncatula OX=3880 GN=11425783 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-20
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAEAK        RS+N+RLSQTLSRINVLEAQ+SCLRAEQTQLS+TLEKER
Sbjct: 676 RTLNSRLQEAEAKAATAEERERSVNDRLSQTLSRINVLEAQISCLRAEQTQLSRTLEKER 735

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 736 QRAAESRQEYLAAKEEA 752

[Close]

BLAST of CsGy1G020020 vs. TrEMBL
Match: tr|A0A1U7ZY13|A0A1U7ZY13_NELNU (golgin candidate 5-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104595157 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKXXXXXXXXRSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAEAK        RS+NERLSQTLSRINVLEAQ+SCLRAEQTQ+S++LEKER
Sbjct: 683 RSLNSRLQEAEAKAATAEESKRSVNERLSQTLSRINVLEAQISCLRAEQTQISRSLEKER 742

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 743 QRAAENRQEYLAAKEEA 759

The following BLAST results are available for this feature:

BLAST of CsGy1G020020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65446.1	6.8e-28	100.00	hypothetical protein Csa_1G423040 [Cucumis sativus]	[more]
XP_022928026.1	4.0e-20	81.82	golgin candidate 5-like [Cucurbita moschata]	[more]
XP_022971745.1	4.0e-20	81.82	golgin candidate 5-like [Cucurbita maxima]	[more]
XP_023512322.1	4.0e-20	81.82	golgin candidate 5 [Cucurbita pepo subsp. pepo]	[more]
PNX57139.1	4.0e-20	80.52	golgin candidate 5-like protein, partial [Trifolium pratense]	[more]

BLAST of CsGy1G020020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79830.4	9.2e-11	62.34	golgin candidate 5	[more]

BLAST of CsGy1G020020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0WVL7\|GOGC5_ARATH	1.7e-09	62.34	Golgin candidate 5 OS=Arabidopsis thaliana OX=3702 GN=GC5 PE=1 SV=1	[more]

BLAST of CsGy1G020020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LZR9\|A0A0A0LZR9_CUCSA	4.5e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423040 PE=4 SV=1	[more]
tr\|A0A2K3JSX1\|A0A2K3JSX1_TRIPR	2.6e-20	80.52	Golgin candidate 5-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L19...	[more]
tr\|A0A072VBZ6\|A0A072VBZ6_MEDTR	4.5e-20	79.22	Coiled-coil vesicle tethering protein, putative OS=Medicago truncatula OX=3880 G...	[more]
tr\|Q2HU52\|Q2HU52_MEDTR	4.5e-20	79.22	Coiled-coil vesicle tethering protein, putative OS=Medicago truncatula OX=3880 G...	[more]
tr\|A0A1U7ZY13\|A0A1U7ZY13_NELNU	1.7e-19	77.92	golgin candidate 5-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104595157 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G020020.1	CsGy1G020020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..79
None	No IPR available	PANTHER	PTHR13140:SF557	GOLGIN CANDIDATE 5	coord: 7..81
None	No IPR available	PANTHER	PTHR13140	MYOSIN	coord: 7..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G020020	Csa1G423040	Cucumber (Chinese Long) v2	cgybcuB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G020020	Watermelon (97103) v2	cgybwmbB064
CsGy1G020020	Wax gourd	cgybwgoB095
CsGy1G020020	Cucumber (Gy14) v2	cgybcgybB014
CsGy1G020020	Cucurbita maxima (Rimu)	cgybcmaB015
CsGy1G020020	Cucurbita maxima (Rimu)	cgybcmaB041
CsGy1G020020	Cucurbita maxima (Rimu)	cgybcmaB135
CsGy1G020020	Cucurbita moschata (Rifu)	cgybcmoB015
CsGy1G020020	Cucurbita moschata (Rifu)	cgybcmoB038
CsGy1G020020	Cucurbita moschata (Rifu)	cgybcmoB126
CsGy1G020020	Cucurbita pepo (Zucchini)	cgybcpeB042
CsGy1G020020	Cucurbita pepo (Zucchini)	cgybcpeB110
CsGy1G020020	Bottle gourd (USVL1VR-Ls)	cgyblsiB061
CsGy1G020020	Melon (DHL92) v3.5.1	cgybmeB039
CsGy1G020020	Melon (DHL92) v3.6.1	cgybmedB033
CsGy1G020020	Watermelon (Charleston Gray)	cgybwcgB064
CsGy1G020020	Watermelon (97103) v1	cgybwmB080
CsGy1G020020	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G020020	Silver-seed gourd	carcgybB0059
CsGy1G020020	Silver-seed gourd	carcgybB0591
CsGy1G020020	Silver-seed gourd	carcgybB0779
CsGy1G020020	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G020020	Cucumber (Chinese Long) v3	cgybcucB023