CsGy1G019640 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G019640
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Glutamate receptor
Location	Chr1 : 18554130 .. 18554850 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGATGAGAAAAGTTTCATTGTTATTAGTAATGTTTTTGTTGATGTTTGGTTTTTTGTTGATTTGGGGAAAAAAAATTGAAGGCCATCGAGAAGAGGAAGAACTAAATAATGAAAATAAGACAAGAAGTAGAAAAGTGAATTTGATACATGTAGGTGCAGTTGTTGATGAAGTGAGTCCATCCATTGGTGTTGCTGCACAAAAATGCATCTATATGGCACTCACCGATTTTTATGCATTTCATTCAAATTATCGTAATAAGTTGGTTCTACATTTTAGAGATTCACAAGACATGGTTGCTGCAACCTCTGCCGGTGAGCTCAAACAAAAACTATATATATATATATATATATCCTTCTTTTAACCCTTCATTATTTATTTTTTTTTTAGTCATACTACGTGTGTGTCTGATCATGCCCACAAACTATAACATGCAACATGCATATATATGATTTTACTTTAATAATTTAATTCAAGAAAACCGATTGAGAGTTGGTTGTCATCCTTTTCAAATACACCAATTGAATTTTTAACAACTTTTCAAATAGATATATGTTTTGAAGTTTTGTGTACTTTACATTACTGTAACGTTGTGTGTATATATGTGGAGTGAGATATCGTTGTTTTCTCTCCCTCTTTAGGTTTGTGGTCTTTTCATTTCGGACTTTTTTCTTAGTTACTTTTGTTCTCAGTTCTTTTTATTAGTAGGGAGCTAG

mRNA sequence

ATGATGAAGATGAGAAAAGTTTCATTGTTATTAGTAATGTTTTTGTTGATGTTTGGTTTTTTGTTGATTTGGGGAAAAAAAATTGAAGGCCATCGAGAAGAGGAAGAACTAAATAATGAAAATAAGACAAGAAGTAGAAAAGTGAATTTGATACATGTAGGTGCAGTTGTTGATGAAGTGAGTCCATCCATTGGTGTTGCTGCACAAAAATGCATCTATATGGCACTCACCGATTTTTATGCATTTCATTCAAATTATCGTAATAAGTTGGTTCTACATTTTAGAGATTCACAAGACATGGTTGCTGCAACCTCTGCCGTCATACTACGTGTTTGTGGTCTTTTCATTTCGGACTTTTTTCTTAGTTACTTTTGTTCTCAGTTCTTTTTATTAGTAGGGAGCTAG

Coding sequence (CDS)

ATGATGAAGATGAGAAAAGTTTCATTGTTATTAGTAATGTTTTTGTTGATGTTTGGTTTTTTGTTGATTTGGGGAAAAAAAATTGAAGGCCATCGAGAAGAGGAAGAACTAAATAATGAAAATAAGACAAGAAGTAGAAAAGTGAATTTGATACATGTAGGTGCAGTTGTTGATGAAGTGAGTCCATCCATTGGTGTTGCTGCACAAAAATGCATCTATATGGCACTCACCGATTTTTATGCATTTCATTCAAATTATCGTAATAAGTTGGTTCTACATTTTAGAGATTCACAAGACATGGTTGCTGCAACCTCTGCCGTCATACTACGTGTTTGTGGTCTTTTCATTTCGGACTTTTTTCTTAGTTACTTTTGTTCTCAGTTCTTTTTATTAGTAGGGAGCTAG

Protein sequence

MMKMRKVSLLLVMFLLMFGFLLIWGKKIEGHREEEELNNENKTRSRKVNLIHVGAVVDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQDMVAATSAVILRVCGLFISDFFLSYFCSQFFLLVGS

Homology

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BLAST of CsGy1G019640 vs. NCBI nr
Match: XP_008453652.1 (PREDICTED: glutamate receptor 2.2-like [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38
Identity = 91/109 (83.49%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 2   MKMRKVSLLLVMFLLMFGFLLIWGKKIEGHREEE-ELNNENKT-RSRKVNLIHVGAVVDE 61
           M+MRK SLL V+F LM GFLLIWGK+IEGHREEE + NN NKT RSRKVNLIHVGAVVDE
Sbjct: 1   MEMRKGSLLSVLFWLMLGFLLIWGKQIEGHREEEVQFNNGNKTSRSRKVNLIHVGAVVDE 60

Query: 62  VSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQDMVAATSAVI 109
           VSPSIGVAAQKCI MALTDFYAFH NY NKLVLHFRDS DMVAATSA +
Sbjct: 61  VSPSIGVAAQKCIKMALTDFYAFHPNYNNKLVLHFRDSHDMVAATSAAV 109

[Close]

BLAST of CsGy1G019640 vs. NCBI nr
Match: XP_022928927.1 (glutamate receptor 2.2-like [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 2   MKMRKVSLLLVMFLLMFGFLLIW-----GKKIEGHREEEELNNENKTRSRKVNLIHVGAV 61
           M+M+ +S L   F L++G LLIW     G KI+G   EEE+ NEN+T    VNLIHVGAV
Sbjct: 1   MEMKGMSKLKAPFWLIWG-LLIWVGLSCGAKIDG---EEEVMNENRT---TVNLIHVGAV 60

Query: 62  VDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQDMVAATSAVI 109
           VD+++PSIG AA+KCI MALTDFYA H +YRN+LV+  RDSQD+VAATSAV+
Sbjct: 61  VDKLTPSIGGAAEKCIQMALTDFYAAHPHYRNRLVMKIRDSQDVVAATSAVV 105

[Close]

BLAST of CsGy1G019640 vs. NCBI nr
Match: XP_023530388.1 (glutamate receptor 2.2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 2   MKMRKVSLLLVMFLLMFGFLLIW-----GKKIEGHREEEELNNENKTRSRKVNLIHVGAV 61
           M+M+ +S L   F L++G LLIW       KI+G   EEE+ NEN+T    VN IHVGAV
Sbjct: 1   MEMKGMSKLRAPFWLIWG-LLIWVGLSCAAKIDG---EEEVMNENRT---AVNFIHVGAV 60

Query: 62  VDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQDMVAATSAVI 109
           VD+++PSIG AA+KCI MALTDFYA H +YRN+L++  RDSQD+VAATSAV+
Sbjct: 61  VDKLTPSIGGAAEKCIQMALTDFYAAHPHYRNRLIMQIRDSQDVVAATSAVV 105

[Close]

BLAST of CsGy1G019640 vs. NCBI nr
Match: XP_022971646.1 (glutamate receptor 2.2-like [Cucurbita maxima])

HSP 1 Score: 106.7 bits (265), Expect = 6.3e-20
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 2   MKMRKVSLLLVMFLLMFGFLLIW-----GKKIEGHREEEELNNENKTRSRKVNLIHVGAV 61
           M+M+  S +   F L++G LLIW       KI+    EEE+ NEN+T    VNLIHVGAV
Sbjct: 1   MEMKGKSKIKAPFWLIWG-LLIWVGLSCAAKID---VEEEVMNENRT---AVNLIHVGAV 60

Query: 62  VDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQDMVAATSAVI 109
           VD+++PSIG AA+KCI MALTDFYA H  YRN+L++H RDSQD+VAATSAV+
Sbjct: 61  VDKLTPSIGGAAEKCIQMALTDFYAAHPYYRNRLIMHIRDSQDVVAATSAVV 105

[Close]

BLAST of CsGy1G019640 vs. NCBI nr
Match: XP_022134803.1 (glutamate receptor 2.2-like [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 5   RKVSLLLVMFLLMFGFLLIWGKKIEGHR--EEEELNNENKTRSRKVNLIHVGAVVDEVSP 64
           R++ ++++   ++  +L+++G      +  + E + + N+TRS KVNLIHVGAVVDE++P
Sbjct: 76  REMKVIMISKAVILIWLILFGLSCASKKDTQNEGIMDGNRTRS-KVNLIHVGAVVDELTP 135

Query: 65  SIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQDMVAATSAVI 109
           SIG AAQKCI MAL DFYA H N RN LV+HFRDSQD+V ATSAV+
Sbjct: 136 SIGGAAQKCITMALADFYAAHPNNRNNLVVHFRDSQDVVDATSAVV 180

[Close]

BLAST of CsGy1G019640 vs. TAIR10
Match: AT2G29110.1 (glutamate receptor 2.8)

HSP 1 Score: 44.3 bits (103), Expect = 6.9e-05
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 47  KVNLIHVGAVVDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDS-QDMVAATS 106
           +++ I VG V+D ++ +        I +AL+DFY  H NYR +L LH RDS +D V A++
Sbjct: 29  QISEIKVGVVLD-LNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDSMKDTVQASA 88

Query: 107 AVI 109
           A +
Sbjct: 89  AAL 90

[Close]

BLAST of CsGy1G019640 vs. TAIR10
Match: AT2G29100.1 (glutamate receptor 2.9)

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 51  IHVGAVVDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDS-QDMVAATSAVI 109
           I VG V+D ++ +        I MA++DFYA H NY  +L LH RDS +D V A++A +
Sbjct: 30  IKVGVVLD-LNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDSMEDTVQASAAAL 87

[Close]

BLAST of CsGy1G019640 vs. TrEMBL
Match: tr|A0A1S3BWV8|A0A1S3BWV8_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103494304 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 91/109 (83.49%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 2   MKMRKVSLLLVMFLLMFGFLLIWGKKIEGHREEE-ELNNENKT-RSRKVNLIHVGAVVDE 61
           M+MRK SLL V+F LM GFLLIWGK+IEGHREEE + NN NKT RSRKVNLIHVGAVVDE
Sbjct: 1   MEMRKGSLLSVLFWLMLGFLLIWGKQIEGHREEEVQFNNGNKTSRSRKVNLIHVGAVVDE 60

Query: 62  VSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQDMVAATSAVI 109
           VSPSIGVAAQKCI MALTDFYAFH NY NKLVLHFRDS DMVAATSA +
Sbjct: 61  VSPSIGVAAQKCIKMALTDFYAFHPNYNNKLVLHFRDSHDMVAATSAAV 109

[Close]

BLAST of CsGy1G019640 vs. TrEMBL
Match: tr|A0A061DUR5|A0A061DUR5_THECC (Glutamate receptor OS=Theobroma cacao OX=3641 GN=TCM_002626 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 41  NKTRSRKVNLIHVGAVVDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQ-D 100
           NKT +  VN +HVG ++D  S   G   Q+CI MA++DFY+ H +Y+ +LVLH RDS+ +
Sbjct: 33  NKTENEMVNEVHVGVILDMGSLE-GKILQRCISMAISDFYSVHDHYKTRLVLHTRDSKGE 92

Query: 101 MVAATSAVI 109
            + A SA +
Sbjct: 93  TLNALSAAV 100

[Close]

BLAST of CsGy1G019640 vs. TrEMBL
Match: tr|A0A1U8A1T8|A0A1U8A1T8_NELNU (Glutamate receptor OS=Nelumbo nucifera OX=4432 GN=LOC104599354 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 51  IHVGAVVDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDS-QDMVAATSAVI 109
           I +G ++D ++ ++G  A+ CI MAL+DFYA H++YR +LVLH RDS +D+VAA SA +
Sbjct: 39  IPIGVILD-LNSTVGEMAETCIRMALSDFYAAHTDYRTRLVLHTRDSNEDVVAAASAAL 96

[Close]

BLAST of CsGy1G019640 vs. TrEMBL
Match: tr|A0A1U8AW40|A0A1U8AW40_NELNU (Glutamate receptor OS=Nelumbo nucifera OX=4432 GN=LOC104607030 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-06
Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 41  NKTRSRKVNLIHVGAVVDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQ-D 100
           N++ S  V+ +HVG V+D ++  +G  AQ CI MA++DFYA +S+Y+ ++VLH RDS+ D
Sbjct: 25  NRSFSANVS-VHVGVVLD-LNSQVGKMAQSCISMAVSDFYAKNSHYKTRMVLHTRDSKND 84

Query: 101 MVAATSAVI 109
           ++ A S+V+
Sbjct: 85  VITAASSVL 91

[Close]

BLAST of CsGy1G019640 vs. TrEMBL
Match: tr|A0A1U8AS57|A0A1U8AS57_NELNU (glutamate receptor 2.7-like OS=Nelumbo nucifera OX=4432 GN=LOC104606995 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-06
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 50  LIHVGAVVDEVSPSIGVAAQKCIYMALTDFYAFHSNYRNKLVLHFRDSQDMVAATSAVIL 109
           L+HVG V+D  +  +G  AQ CI MA++DFYA +S+Y+ ++VLH RDS++ V   ++V L
Sbjct: 33  LVHVGVVLD-FNSQVGKMAQSCISMAVSDFYARNSHYKTRMVLHTRDSKNDVLTAASVEL 92

Query: 110 RV 112
            V
Sbjct: 93  HV 93

The following BLAST results are available for this feature:

BLAST of CsGy1G019640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453652.1	1.8e-38	83.49	PREDICTED: glutamate receptor 2.2-like [Cucumis melo]	[more]
XP_022928927.1	1.1e-21	60.71	glutamate receptor 2.2-like [Cucurbita moschata]	[more]
XP_023530388.1	1.7e-20	58.04	glutamate receptor 2.2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971646.1	6.3e-20	58.04	glutamate receptor 2.2-like [Cucurbita maxima]	[more]
XP_022134803.1	6.9e-19	53.77	glutamate receptor 2.2-like [Momordica charantia]	[more]

BLAST of CsGy1G019640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29110.1	6.9e-05	39.68	glutamate receptor 2.8	[more]
AT2G29100.1	1.5e-04	42.37	glutamate receptor 2.9	[more]

BLAST of CsGy1G019640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G019640 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BWV8\|A0A1S3BWV8_CUCME	1.2e-38	83.49	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103494304 PE=3 SV=1	[more]
tr\|A0A061DUR5\|A0A061DUR5_THECC	3.4e-06	44.93	Glutamate receptor OS=Theobroma cacao OX=3641 GN=TCM_002626 PE=3 SV=1	[more]
tr\|A0A1U8A1T8\|A0A1U8A1T8_NELNU	4.5e-06	50.85	Glutamate receptor OS=Nelumbo nucifera OX=4432 GN=LOC104599354 PE=3 SV=1	[more]
tr\|A0A1U8AW40\|A0A1U8AW40_NELNU	9.9e-06	44.93	Glutamate receptor OS=Nelumbo nucifera OX=4432 GN=LOC104607030 PE=3 SV=1	[more]
tr\|A0A1U8AS57\|A0A1U8AS57_NELNU	9.9e-06	46.77	glutamate receptor 2.7-like OS=Nelumbo nucifera OX=4432 GN=LOC104606995 PE=3 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035235	ionotropic glutamate receptor signaling pathway
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004970	ionotropic glutamate receptor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G019640.1	CsGy1G019640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34836	FAMILY NOT NAMED	coord: 51..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G019640	CmoCh11G004180	Cucurbita moschata (Rifu)	cgybcmoB038
CsGy1G019640	Cla97C06G122330	Watermelon (97103) v2	cgybwmbB064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G019640	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G019640	Wax gourd	cgybwgoB095
CsGy1G019640	Cucurbita maxima (Rimu)	cgybcmaB015
CsGy1G019640	Cucurbita maxima (Rimu)	cgybcmaB041
CsGy1G019640	Cucurbita pepo (Zucchini)	cgybcpeB042
CsGy1G019640	Cucurbita pepo (Zucchini)	cgybcpeB110
CsGy1G019640	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G019640	Bottle gourd (USVL1VR-Ls)	cgyblsiB061
CsGy1G019640	Melon (DHL92) v3.5.1	cgybmeB039
CsGy1G019640	Melon (DHL92) v3.6.1	cgybmedB033
CsGy1G019640	Watermelon (Charleston Gray)	cgybwcgB064
CsGy1G019640	Watermelon (97103) v1	cgybwmB080
CsGy1G019640	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G019640	Silver-seed gourd	carcgybB0779