CsGy1G019450 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G019450
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	E3 ubiquitin-protein ligase RGLG1 isoform X2
Location	Chr1 : 18248278 .. 18253316 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTGCACTCTCAATCGTCGTCTCAGTCGTTGCCTTTTCAATTCGCATCTCCATCTCTCTCGGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGCCATCTCCATCTCTGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGTCATCTCCATCTCTGCTCTCTTATTGTCGCTCCTTCCAAATCCGTCCATCGGATTTCTTCGACCTCTCGAACTCGGCTGGCGTCAAGGCATTGGAGCTTCGCATTGGCTAGGGTGAAACCCCCCTTGATGGAGATCGGGTAATTTCATTTCAAAATCCAATTTAGGGTGATTTGTTCTAGTGACTAGATTGACTAATAGAAGGAGCAGAGCAGGAAGGGATGAGTTTTTTTTTTTTTTTTATAAATATTTTGTTGACCCTTTTTCTGGGTTTAGAGGCTTTCCAATTGATGAGGAATTAAATTCAGATGATGAAAAACAATCCGAAAAAGAAAGTAGAAATCATAAGAATTCATCCAAAACGCCTCTTGTTAAAAATTGATGCGTTGTTTTCTTACTACTTTACTTTAGGTTGGATCGGTTCTCGTTCGAAAATTCTCTTTTGTTTTCCATGGTTTGTCCATATATTTTTTGCATTCAATTTTTATATCATGCAATTTTTTTCCTGTAAAATTTTTCAGGGTGGAGTCATCTTTCAGTATCCATTAAACGAAAGGTATTTTGTTTACTATATTGATATATTTTTGTTTATGATGTTGGGTTGATGAAATTTAACTTCCATTCTACTTCAATATCCATAATCAAACAAACCTATCAAAATGGCCATTACTCTACAGCTCATGGCCACTGTGAGGTATTTTTCTTCTCTCTTAAAGAAATTGATCTTTCTCTTCAACTTAGATTTTCCATTTTTCAAATGTATTTTTGATTGTGACTCAACTTACTGATATTTTGATGTATTTATGTGTTTTTGTTTTCCTTAGTGAACATGGGTTGCTATATTTTTAGAATTCAAGGACACACTAGTACAACATAAACAAGTCCTATTCAAGTAAAAGTTGTAAATATAAGTTGTGCTTACAAAAGGTGTTAATTGAGCATCTTTTTTATTTTTCATTATTTTTGTTTTCTTTTTTCTCATTACTTAGAAGTCAATTTGTTTATTTGTCTTATCCCTTTTCTCTTGTCCGAATTTTCCTTTGTCTTCATTGTACACATGAACTGAAATCTCAATCGAGGATATTTCTTTGTCAGTTTTCGATGGAAAGTTTTGCAATTGGGATGTGAGTGTAACGTTAGTTCAATTTTGACTTGGTTCTTGATGTCATATTGCCTCATGATGTCTTGGATTGTTGGGTTAGAGTTTGTTTGATAGATAACAAGATTCTTAGGATTAAATGTGATATTAGTGGATGTAAAGAAACAAGACTCGTCTGTTTAAGAGAAGTGTATATAATATGTAATTGGTCATTTGGATTACATCTTGTGAATTCTCTCGTATCATTTCTTAGTTGTAGTAGAAAAATGATTTGATGATTTCTATGGGAGCTCAAAAGCGTTGTAAAAGGGTGCTTGTAGTAGAAAAATGATTTGATGATTTCTTTATTTGTTGATTTCGTAACAATTTCTGTTTTGGGTTTGGAAAAATAACACACTAACTATTACGCAGGAGAGAATCTGTATATGGAAAAAGTGCAGGGCCACTTCCTCCTCCTCCTGAAGTCATCAATTATGACAATGCAGTTACAAACCAAATTTTGGAGAATGCAAAAGCTGAAAAACATAGTTCCTCATCTGAATCGGTAACTTTGCTTTTATTTTATTTATGGAGTTTTCTAAGAATGAGAGAACCAAACATGTGTGGCTTTACAATTACTCTAGGAAAATTTTGTTGAAATCTGGGGTTTAAGATTGATTAAGGCAACAAGTTGTGAGAGCCTTGTCTACTGAAACAAAAGAAATTTCTCTTTTGTTTAAATTTCTTTTGTTTCATGACTTCATTAATATAAATTATTAATTAAATGTCTCTTGTTCAAGGTCTGCCCCATATGCCTCACAAACCCAAAGGACATGGCTTTTGCATGTGGTCATACAGTAAGTTCTCTACCTTTGAACTTCTAACAGTGCTAATGTTTGCTAATATTTTCTAATGGAATAAAAAATGTTTGAATGGTTTCATATTCGTATTACTTGGCCAAGACACTCATGAATGTTTGAATGGTTTCATATTCGTATTATTTGGTCATACAATAGGTTTTGCTGTTAAAGTATCTTTCTAATGTTTATTTTTCCAATATTCAACTGACCTTAATTATCCACTGATTTGAATTTTTAAGTTTGTTGATTTCATGGTGATTTTTTAGGCTGCTTCAACTATTTCACAAGCATTGCATGCTATTTTATTTTAGTCAGTATACTGAATCCATTTCTTTATGTCAACTTTTCTCTGTTATATGTTTAGAATATGTTGAAAAGAATAAATAGTACCCTAAATTTATCTTTTTGAACTTAACCTTTTAGTTGATATTTTAATGAACATTTATAATTTCCCCAAGTGTTGAAGATTTTATTGGTACTTAATTTTATATTTTTATTTTTACAGACTCTGGCCTTATGTGTTTGAAGCTATTTTCTGATCGATCCATTGTAGTGATGAAGCTACGAAGCAAGTGACTGATGTTTGGTTAGTGACAAGATTTATTGTAATTTTGTTATTCATGACAATATAACCTTGTTGTATTTAGTTTCTTTGTAAAAATATATTACCCACGTTCAGTTTCTATTTTGCTTGTATTTGTCCCTTCGGAAAATTTCGATAGATTTTCTACACTTAGTTTCTTTGTAAAAATGTTATCTATGAAATCTAATGTAAATCCTATTTCATTATGTATATGTAAAGTCTTGGAATTGAATATATATGGTGAATGGTTTTATTTATATATGTTTGAGATTTGAAACTATATTTGATGAATATCAAATATCTATGAAACTGTTGCTGGACAATTACAGAACAATCATCTTTCCATTACAGCATAATTCAATTACAATTTTTTTTAAAAAAAAAATTAAAAAATGCTTGACGGTTTTAAAATGTCATGAACAATTGCAAGCTTAACGGTTTTAAACTATCATGAACAATTGCATTTTTGACGGTTGACAAATGTCAAGAACAATTACATTCTTGAGAGTTTTAAAATGTCATGAATATTAAAATTCTTGACGGGTTTAAAATGTCATAAATCAGTTCATCATTGACGGTTTTAAAATGTCATAAACAATTGCATTTTTTACGGTTGACAAATGTCAAGAACAATTACATTCTTGAGAGTTTTAAAATGTCATGAATATTAAAATTCTTGACGGGTTTAAAATGTCATAAATCAGTTCATCATTGACGGTTTTAAAATGTCATAAACGATACCAGTCTTGACGGTCCTAAAACGTCATGAACATAAGTATACTTGACGTTTATAAAACGTCAACGTTCACTATTCTTGACGTTTAATCAACCGTCAAGAACTTTGCCTTTCTTGACGCTGGCTTCAACGACAGTTTTAAAACCGTCAAGAGAGCCTTCTCTTGACAGTTTAAAAACGTCAAGAGAGCGTGTTTTTGTAGTAGTGGATATATAAGTTTGTCCTTTCCAAGAATGAGATGTATGTTGGAAAAGGTTATTTGAGTGATGGTTTGTTTAAACTAAATGTACTCGCAATTGTACCCAAAAGTATTATTAATAATAAAGTATCTACTTTTACTTATATTGTTGAGTCATTTGTTTGGCATGACAGACTAGAACATGTCAATTTCAATTCTTTCCGTAGGCTAATTAATATGAACTTGATTCCAAAATTCACTTTTGACACAAATCATAAATGTGAGGTGTTGTGAACTAAAAAATGACCAAAACATCTTTTCATTCAACTAGAAGAATTACCAAATTTTTAGGGGGTGCTTGGGGGAAGGAAAGGAATATGGAAAAAGAGATTAAGTGGAGGAAATTATTATTATAGTCCTTATTTTGGAAAACAATTATGTGAAAAGGATTATGCCAAAAAAAATTATTAATTTTTTTAATTTCTATAAAAATGTTTTTTTAATTTGTTCTGTGAACCGAATACAAAAAAAATAAAAAATAAATTTATTTGTATAAGATATTTTTTTCAATTTGTACCGTAAATCCAATGTATAAACAAATTTATTAAATTTTGTTTTCATTTGTAATTTTTTTATTTCCACCATAAATCCAATACACAAGTTTGTTTTGTTAATTTTTTTTCACTTCTATAAATCTAATTTTTTTTCATAAAAACGATAACCAACATAATTCCTGTGGAATGAAATAAATTTATTGGAAACAAATGTATTTGTTTTCCATATGCAGTTAAATAGAACATCAATTGCATAATTCATTAGTCTAACGAAAAATAAACAAAGAAAAGCAATGAAAACGGAATGAATAACTTGTCATGCGGTTGAGGCATAATGACAATCGAGGGTTATCGTGAAGAATGACCCTACAATAGGTGGGCTTCAGGGCATCAAACATGTCAAAAGATGTATGCATTATGGACGTTTTTGTTGTCACTACGATATCATACATTTGGTCAAGTTCTCTTCACTGAGGCTCGGAATGGACTTCAAGTGTGCAATTACCTCCCATCGCAAAGCAACTTCATTATGGCAGGCTTTATCTGGCCATTTTCACAATCGCCCTGAGATGCTTATTTGTACAGTCCATGGCATCGCAAATGAGGTCAAAATTATCGAATGACTACATGTCGCACTTCCTTTTGCTTCTGCTCAAACTCGGTCTAGCATTGCTGGACCTAGAAGGTCGTCTGACCATCATGTCTTCTAAGGACATGTTCATTCTCGAGCTGCACACAGTGGGAAACTCCATATTCAGCCCATCTTTCTCTCGTACTTCGTCGTTGTCGCTTGGTACATTAGACTTGATATCTACGAAGGTCTCCACACAGACCCCTATCGTGCAGTCTTTCTCGGATATGTATGACAACGCGTCG

mRNA sequence

CGCTGCACTCTCAATCGTCGTCTCAGTCGTTGCCTTTTCAATTCGCATCTCCATCTCTCTCGGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGCCATCTCCATCTCTGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGTCATCTCCATCTCTGCTCTCTTATTGTCGCTCCTTCCAAATCCGTCCATCGGATTTCTTCGACCTCTCGAACTCGGCTGGCGTCAAGGCATTGGAGCTTCGCATTGGCTAGGGTGAAACCCCCCTTGATGGAGATCGGGTTGGATCGGTTCTCGTTCGAAAATTCTCTTTTGTTTTCCATGGGTGGAGTCATCTTTCAGTATCCATTAAACGAAAGGAGAGAATCTGTATATGGAAAAAGTGCAGGGCCACTTCCTCCTCCTCCTGAAGTCATCAATTATGACAATGCAGTTACAAACCAAATTTTGGAGAATGCAAAAGCTGAAAAACATAGTTCCTCATCTGAATCGGTCTGCCCCATATGCCTCACAAACCCAAAGGACATGGCTTTTGCATGTGACTCTGGCCTTATGTGTTTGAAGCTATTTTCTGATCGATCCATTGTAGTGATGAAGCTACGAAGCAAGCTTTATCTGGCCATTTTCACAATCGCCCTGAGATGCTTATTTGTACAGTCCATGGCATCGCAAATGAGGTCAAAATTATCGAATGACTACATGTCGCACTTCCTTTTGCTTCTGCTCAAACTCGGTCTAGCATTGCTGGACCTAGAAGGTCGTCTGACCATCATGTCTTCTAAGGACATGTTCATTCTCGAGCTGCACACAGTGGGAAACTCCATATTCAGCCCATCTTTCTCTCGTACTTCGTCGTTGTCGCTTGGTACATTAGACTTGATATCTACGAAGGTCTCCACACAGACCCCTATCGTGCAGTCTTTCTCGGATATGTATGACAACGCGTCG

Coding sequence (CDS)

CGCTGCACTCTCAATCGTCGTCTCAGTCGTTGCCTTTTCAATTCGCATCTCCATCTCTCTCGGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGCCATCTCCATCTCTGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGTCATCTCCATCTCTGCTCTCTTATTGTCGCTCCTTCCAAATCCGTCCATCGGATTTCTTCGACCTCTCGAACTCGGCTGGCGTCAAGGCATTGGAGCTTCGCATTGGCTAGGGTGAAACCCCCCTTGATGGAGATCGGGTTGGATCGGTTCTCGTTCGAAAATTCTCTTTTGTTTTCCATGGGTGGAGTCATCTTTCAGTATCCATTAAACGAAAGGAGAGAATCTGTATATGGAAAAAGTGCAGGGCCACTTCCTCCTCCTCCTGAAGTCATCAATTATGACAATGCAGTTACAAACCAAATTTTGGAGAATGCAAAAGCTGAAAAACATAGTTCCTCATCTGAATCGGTCTGCCCCATATGCCTCACAAACCCAAAGGACATGGCTTTTGCATGTGACTCTGGCCTTATGTGTTTGAAGCTATTTTCTGATCGATCCATTGTAGTGATGAAGCTACGAAGCAAGCTTTATCTGGCCATTTTCACAATCGCCCTGAGATGCTTATTTGTACAGTCCATGGCATCGCAAATGAGGTCAAAATTATCGAATGACTACATGTCGCACTTCCTTTTGCTTCTGCTCAAACTCGGTCTAGCATTGCTGGACCTAGAAGGTCGTCTGACCATCATGTCTTCTAAGGACATGTTCATTCTCGAGCTGCACACAGTGGGAAACTCCATATTCAGCCCATCTTTCTCTCGTACTTCGTCGTTGTCGCTTGGTACATTAGACTTGATATCTACGAAGGTCTCCACACAGACCCCTATCGTGCAGTCTTTCTCGGATATGTATGACAACGCGTCG

Protein sequence

RCTLNRRLSRCLFNSHLHLSRLHSQFSSPSLFWFLSIAISISATLSIFISISLLVPLNRHLHLCSLIVAPSKSVHRISSTSRTRLASRHWSFALARVKPPLMEIGLDRFSFENSLLFSMGGVIFQYPLNERRESVYGKSAGPLPPPPEVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMAFACDSGLMCLKLFSDRSIVVMKLRSKLYLAIFTIALRCLFVQSMASQMRSKLSNDYMSHFLLLLLKLGLALLDLEGRLTIMSSKDMFILELHTVGNSIFSPSFSRTSSLSLGTLDLISTKVSTQTPIVQSFSDMYDNAS

Homology

[Close]

BLAST of CsGy1G019450 vs. NCBI nr
Match: XP_008462645.1 (PREDICTED: E3 ubiquitin-protein ligase RGLG1 isoform X1 [Cucumis melo] >XP_008462646.1 PREDICTED: E3 ubiquitin-protein ligase RGLG1 isoform X1 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 8.7e-23
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 129 NERRESVYGKSAGPLPPPPEVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMA 188
           N +RES+YGKSAGPLPPPPEVIN+DNAV  Q LE+AKAEKHSSSSESVCPICLTNPKDMA
Sbjct: 272 NSKRESIYGKSAGPLPPPPEVINHDNAVAIQNLEHAKAEKHSSSSESVCPICLTNPKDMA 331

Query: 189 FAC 192
           FAC
Sbjct: 332 FAC 334

[Close]

BLAST of CsGy1G019450 vs. NCBI nr
Match: XP_008462648.1 (PREDICTED: E3 ubiquitin-protein ligase RGLG1 isoform X2 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 8.7e-23
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 129 NERRESVYGKSAGPLPPPPEVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMA 188
           N +RES+YGKSAGPLPPPPEVIN+DNAV  Q LE+AKAEKHSSSSESVCPICLTNPKDMA
Sbjct: 254 NSKRESIYGKSAGPLPPPPEVINHDNAVAIQNLEHAKAEKHSSSSESVCPICLTNPKDMA 313

Query: 189 FAC 192
           FAC
Sbjct: 314 FAC 316

[Close]

BLAST of CsGy1G019450 vs. NCBI nr
Match: KGN65402.1 (hypothetical protein Csa_1G408740 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 63/100 (63.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 6   RRLSRCLFNSHLHLSRLHSQFSSPSLFWFLSIXXXXXXXXXXXXXXXXXXPLNRHLHLCS 65
           + LS    +S      L  QF+SPSL   LSI                  PLNRHLHLCS
Sbjct: 2   QNLSSQPLHSQSSSQSLPFQFASPSLSATLSI----------FISISLLVPLNRHLHLCS 61

Query: 66  LIVAPSKSVHRISSTSRTRLASRHWSFALARVKPPLMEIG 106
           LIVAPSKSVHRISSTSRTRLASRHWSFALARVKPPLMEIG
Sbjct: 62  LIVAPSKSVHRISSTSRTRLASRHWSFALARVKPPLMEIG 91

[Close]

BLAST of CsGy1G019450 vs. NCBI nr
Match: XP_023003248.1 (E3 ubiquitin-protein ligase RGLG3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 131 RRESVYGKSAGPLPPPPEVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMAFA 190
           +RESVY KSAGP+PPPPEVIN+DNAV NQ L  A AE+ SSSSESVCPIC TNPKDMAFA
Sbjct: 236 KRESVYSKSAGPVPPPPEVINHDNAVANQNLIKANAERQSSSSESVCPICQTNPKDMAFA 295

Query: 191 C 192
           C
Sbjct: 296 C 296

[Close]

BLAST of CsGy1G019450 vs. NCBI nr
Match: XP_023003247.1 (E3 ubiquitin-protein ligase RGLG3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 131 RRESVYGKSAGPLPPPPEVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMAFA 190
           +RESVY KSAGP+PPPPEVIN+DNAV NQ L  A AE+ SSSSESVCPIC TNPKDMAFA
Sbjct: 274 KRESVYSKSAGPVPPPPEVINHDNAVANQNLIKANAERQSSSSESVCPICQTNPKDMAFA 333

Query: 191 C 192
           C
Sbjct: 334 C 334

[Close]

BLAST of CsGy1G019450 vs. TAIR10
Match: AT5G63970.1 (Copine (Calcium-dependent phospholipid-binding protein) family)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-11
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 142 PLPPPPEVINYDNA---VTNQILENA-KAEKHSSSSESVCPICLTNPKDMAFAC 192
           PLPPPPEVI  DNA   V NQ+ E A K+++ + S+  VCPICLTNPKDMAF+C
Sbjct: 284 PLPPPPEVIERDNAVRSVPNQMTETAEKSDRLAPSTVPVCPICLTNPKDMAFSC 337

[Close]

BLAST of CsGy1G019450 vs. Swiss-Prot
Match: sp|Q8RX26|RGLG3_ARATH (E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-09
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 142 PLPPPPEVINYDNA---VTNQILENA-KAEKHSSSSESVCPICLTNPKDMAFAC 192
           PLPPPPEVI  DNA   V NQ+ E A K+++ + S+  VCPICLTNPKDMAF+C
Sbjct: 284 PLPPPPEVIERDNAVRSVPNQMTETAEKSDRLAPSTVPVCPICLTNPKDMAFSC 337

[Close]

BLAST of CsGy1G019450 vs. TrEMBL
Match: tr|A0A1S3CHF5|A0A1S3CHF5_CUCME (E3 ubiquitin-protein ligase RGLG1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500954 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-23
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 129 NERRESVYGKSAGPLPPPPEVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMA 188
           N +RES+YGKSAGPLPPPPEVIN+DNAV  Q LE+AKAEKHSSSSESVCPICLTNPKDMA
Sbjct: 272 NSKRESIYGKSAGPLPPPPEVINHDNAVAIQNLEHAKAEKHSSSSESVCPICLTNPKDMA 331

Query: 189 FAC 192
           FAC
Sbjct: 332 FAC 334

[Close]

BLAST of CsGy1G019450 vs. TrEMBL
Match: tr|A0A1S3CHE4|A0A1S3CHE4_CUCME (E3 ubiquitin-protein ligase RGLG1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500954 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-23
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 129 NERRESVYGKSAGPLPPPPEVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMA 188
           N +RES+YGKSAGPLPPPPEVIN+DNAV  Q LE+AKAEKHSSSSESVCPICLTNPKDMA
Sbjct: 254 NSKRESIYGKSAGPLPPPPEVINHDNAVAIQNLEHAKAEKHSSSSESVCPICLTNPKDMA 313

Query: 189 FAC 192
           FAC
Sbjct: 314 FAC 316

[Close]

BLAST of CsGy1G019450 vs. TrEMBL
Match: tr|A0A0A0LX17|A0A0A0LX17_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G408740 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.6e-19
Identity = 63/100 (63.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 6   RRLSRCLFNSHLHLSRLHSQFSSPSLFWFLSIXXXXXXXXXXXXXXXXXXPLNRHLHLCS 65
           + LS    +S      L  QF+SPSL   LSI                  PLNRHLHLCS
Sbjct: 2   QNLSSQPLHSQSSSQSLPFQFASPSLSATLSI----------FISISLLVPLNRHLHLCS 61

Query: 66  LIVAPSKSVHRISSTSRTRLASRHWSFALARVKPPLMEIG 106
           LIVAPSKSVHRISSTSRTRLASRHWSFALARVKPPLMEIG
Sbjct: 62  LIVAPSKSVHRISSTSRTRLASRHWSFALARVKPPLMEIG 91

[Close]

BLAST of CsGy1G019450 vs. TrEMBL
Match: tr|A0A0H4TDF1|A0A0H4TDF1_MOMCH (E3 ubiquitin-protein ligase RGLG1-like protein OS=Momordica charantia OX=3673 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 131 RRESVYGKSAGPLPPPPEVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMAFA 190
           +RESV G S  PL PPPEVIN+DNAV NQ L+N  AEK S+S+ESVCPICLTNPKDMAFA
Sbjct: 275 KRESVNGTSTRPLSPPPEVINHDNAVANQDLKNVNAEKPSASAESVCPICLTNPKDMAFA 334

Query: 191 C 192
           C
Sbjct: 335 C 335

[Close]

BLAST of CsGy1G019450 vs. TrEMBL
Match: tr|A0A0A0KF27|A0A0A0KF27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G476060 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 148 EVINYDNAVTNQILENAKAEKHSSSSESVCPICLTNPKDMAFAC 192
           ++INYDNAV NQILENAKAEKHSSSSESVCPICLTNPKDMAFAC
Sbjct: 278 QIINYDNAVANQILENAKAEKHSSSSESVCPICLTNPKDMAFAC 321

The following BLAST results are available for this feature:

BLAST of CsGy1G019450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462645.1	8.7e-23	87.30	PREDICTED: E3 ubiquitin-protein ligase RGLG1 isoform X1 [Cucumis melo] >XP_00846...	[more]
XP_008462648.1	8.7e-23	87.30	PREDICTED: E3 ubiquitin-protein ligase RGLG1 isoform X2 [Cucumis melo]	[more]
KGN65402.1	1.3e-18	63.00	hypothetical protein Csa_1G408740 [Cucumis sativus]	[more]
XP_023003248.1	1.7e-18	80.33	E3 ubiquitin-protein ligase RGLG3-like isoform X2 [Cucurbita maxima]	[more]
XP_023003247.1	1.7e-18	80.33	E3 ubiquitin-protein ligase RGLG3-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy1G019450 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63970.1	9.3e-11	62.96	Copine (Calcium-dependent phospholipid-binding protein) family	[more]

BLAST of CsGy1G019450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8RX26\|RGLG3_ARATH	1.7e-09	62.96	E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 ...	[more]

BLAST of CsGy1G019450 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CHF5\|A0A1S3CHF5_CUCME	5.7e-23	87.30	E3 ubiquitin-protein ligase RGLG1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|A0A1S3CHE4\|A0A1S3CHE4_CUCME	5.7e-23	87.30	E3 ubiquitin-protein ligase RGLG1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|A0A0A0LX17\|A0A0A0LX17_CUCSA	8.6e-19	63.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G408740 PE=4 SV=1	[more]
tr\|A0A0H4TDF1\|A0A0H4TDF1_MOMCH	1.8e-16	75.41	E3 ubiquitin-protein ligase RGLG1-like protein OS=Momordica charantia OX=3673 PE...	[more]
tr\|A0A0A0KF27\|A0A0A0KF27_CUCSA	2.2e-14	93.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G476060 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G019450.1	CsGy1G019450.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G019450	Wax gourd	cgybwgoB004
CsGy1G019450	Wax gourd	cgybwgoB097
CsGy1G019450	Cucurbita maxima (Rimu)	cgybcmaB020
CsGy1G019450	Cucurbita maxima (Rimu)	cgybcmaB044
CsGy1G019450	Cucurbita maxima (Rimu)	cgybcmaB138
CsGy1G019450	Cucurbita moschata (Rifu)	cgybcmoB020
CsGy1G019450	Cucurbita moschata (Rifu)	cgybcmoB041
CsGy1G019450	Cucurbita pepo (Zucchini)	cgybcpeB045
CsGy1G019450	Cucurbita pepo (Zucchini)	cgybcpeB113
CsGy1G019450	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G019450	Bottle gourd (USVL1VR-Ls)	cgyblsiB059
CsGy1G019450	Melon (DHL92) v3.5.1	cgybmeB053
CsGy1G019450	Melon (DHL92) v3.6.1	cgybmedB048
CsGy1G019450	Melon (DHL92) v3.6.1	cgybmedB065
CsGy1G019450	Watermelon (Charleston Gray)	cgybwcgB067
CsGy1G019450	Watermelon (97103) v1	cgybwmB083
CsGy1G019450	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G019450	Silver-seed gourd	carcgybB0038
CsGy1G019450	Silver-seed gourd	carcgybB0134
CsGy1G019450	Silver-seed gourd	carcgybB0571
CsGy1G019450	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G019450	Cucumber (Chinese Long) v3	cgybcucB019
CsGy1G019450	Watermelon (97103) v2	cgybwmbB021
CsGy1G019450	Watermelon (97103) v2	cgybwmbB067