CsGy1G018800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G018800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	glial fibrillary acidic protein-like
Location	Chr1 : 17011175 .. 17011948 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCATGTCCTAGCAACAGAGAATGAAGGACTGAGGAAAGAAGTCAAACGATGGGTGCAAAAAGCTACAACTTCTGAAAGGCAACTTGAAGAAGCGCAACGACATCTTCAAAGACAGTCAGAGTTGGAAAAAGACATGAATTCTTTAAACATTGAAGCTATTCAAATTAGAAAGAAAAACAAAAGATTACTGAGAGATATTGCTACTATGCATAGTGAAGCTGAAGCTCAAAAAGTGTGCATTAGAGAATTGAAGCAGGAATTAGAAAGAGTGAGTAAGGTTGTTATAGATTTCCAAAGTGCATTAGACGAGCAAGCCACATCATCTCAAAGAATCACTACAAAAATGGAGGCTCTAGATAATTTGGCTAAAGAGTATAAAATATGACTTGCATAAGAAGAGTGCAAAAATACACTTCTACAGGAGACTGTTACAAGTTTTGAACACCAGCTGTTGATTTGTCGCAATGCACGAAAGGTGGTAACAGAAGATCATGCTCGATTATTGAACGAGCACAAAGAAGTGTTAGGAGATTTTGCAATTTGGAGAGATGACTATAACATTATGAGACACAGATATGAGGTTGTTAGAAGACAAATTGAACAAGGAACGAAAAAGCTAAGGCATATGGCAAGAATGTCATATCAGCTCTCAACACGAGCTATAGTCCTTCAGGAAAACATTGTACCAACACAACGAGGCGATCGAGAGTTGTCCCACTTTCTAGAGATTATAGGGCATTATCTTGGGCGTTTTGGGTGCTACCATTAG

mRNA sequence

ATGAGTCATGTCCTAGCAACAGAGAATGAAGGACTGAGGAAAGAAGTCAAACGATGGGTGCAAAAAGCTACAACTTCTGAAAGGCAACTTGAAGAAGCGCAACGACATCTTCAAAGACAGTCAGAGTTGGAAAAAGACATGAATTCTTTAAACATTGAAGCTATTCAAATTAGAAAGAAAAACAAAAGATTACTGAGAGATATTGCTACTATGCATAGTGAAGCTGAAGCTCAAAAAGTGTGCATTAGAGAATTGAAGCAGGAATTAGAAAGAGTGAGTAAGGAGACTGTTACAAGTTTTGAACACCAGCTGTTGATTTGTCGCAATGCACGAAAGGTGGTAACAGAAGATCATGCTCGATTATTGAACGAGCACAAAGAAGTGTTAGGAGATTTTGCAATTTGGAGAGATGACTATAACATTATGAGACACAGATATGAGGTTGTTAGAAGACAAATTGAACAAGGAACGAAAAAGCTAAGGCATATGGCAAGAATGTCATATCAGCTCTCAACACGAGCTATAGTCCTTCAGGAAAACATTGTACCAACACAACGAGGCGATCGAGAGTTGTCCCACTTTCTAGAGATTATAGGGCATTATCTTGGGCGTTTTGGGTGCTACCATTAG

Coding sequence (CDS)

ATGAGTCATGTCCTAGCAACAGAGAATGAAGGACTGAGGAAAGAAGTCAAACGATGGGTGCAAAAAGCTACAACTTCTGAAAGGCAACTTGAAGAAGCGCAACGACATCTTCAAAGACAGTCAGAGTTGGAAAAAGACATGAATTCTTTAAACATTGAAGCTATTCAAATTAGAAAGAAAAACAAAAGATTACTGAGAGATATTGCTACTATGCATAGTGAAGCTGAAGCTCAAAAAGTGTGCATTAGAGAATTGAAGCAGGAATTAGAAAGAGTGAGTAAGGAGACTGTTACAAGTTTTGAACACCAGCTGTTGATTTGTCGCAATGCACGAAAGGTGGTAACAGAAGATCATGCTCGATTATTGAACGAGCACAAAGAAGTGTTAGGAGATTTTGCAATTTGGAGAGATGACTATAACATTATGAGACACAGATATGAGGTTGTTAGAAGACAAATTGAACAAGGAACGAAAAAGCTAAGGCATATGGCAAGAATGTCATATCAGCTCTCAACACGAGCTATAGTCCTTCAGGAAAACATTGTACCAACACAACGAGGCGATCGAGAGTTGTCCCACTTTCTAGAGATTATAGGGCATTATCTTGGGCGTTTTGGGTGCTACCATTAG

Protein sequence

MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVSKETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH

Homology

[Close]

BLAST of CsGy1G018800 vs. NCBI nr
Match: KGN65327.1 (hypothetical protein Csa_1G328390 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60
          MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK
Sbjct: 1  MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 61 NKRLLRDIATMHSEAEAQKVCIRELKQELERVSKETV 98
          NKRLLRDIATMHSEAEAQKVCIRELKQELERVSK  +
Sbjct: 61 NKRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVI 97

[Close]

BLAST of CsGy1G018800 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 72/152 (47.37%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 1   MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60
           M+ VLATENE LR+EVK+WVQ+A  ++R L+EA+R   ++ ELEK+ +SLN EAIQ+RKK
Sbjct: 27  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKR---KRLELEKENDSLNTEAIQVRKK 86

Query: 61  NKRLLRDIATMHSEAEAQKV------------------------CIRELKQEL-ERVSK- 120
           NKRLLR+IA +H E EA+K                          I E K +L E  SK 
Sbjct: 87  NKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTAMGIEVLQHSIEEYKSQLIEAESKN 146

Query: 121 ----ETVTSFEHQLLICRNARKVVTEDHARLL 123
               + V S E QLLICR AR+V+T+D+A+L+
Sbjct: 147 NFLQKAVNSSESQLLICRKAREVITDDYAQLM 175

[Close]

BLAST of CsGy1G018800 vs. TrEMBL
Match: tr|A0A0A0LWU7|A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.4e-40
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60
          MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK
Sbjct: 1  MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 61 NKRLLRDIATMHSEAEAQKVCIRELKQELERVSKETV 98
          NKRLLRDIATMHSEAEAQKVCIRELKQELERVSK  +
Sbjct: 61 NKRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVI 97

[Close]

BLAST of CsGy1G018800 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 72/152 (47.37%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 1   MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60
           M+ VLATENE LR+EVK+WVQ+A  ++R L+EA+R   ++ ELEK+ +SLN EAIQ+RKK
Sbjct: 27  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKR---KRLELEKENDSLNTEAIQVRKK 86

Query: 61  NKRLLRDIATMHSEAEAQKV------------------------CIRELKQEL-ERVSK- 120
           NKRLLR+IA +H E EA+K                          I E K +L E  SK 
Sbjct: 87  NKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTAMGIEVLQHSIEEYKSQLIEAESKN 146

Query: 121 ----ETVTSFEHQLLICRNARKVVTEDHARLL 123
               + V S E QLLICR AR+V+T+D+A+L+
Sbjct: 147 NFLQKAVNSSESQLLICRKAREVITDDYAQLM 175

The following BLAST results are available for this feature:

BLAST of CsGy1G018800 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65327.1	1.1e-39	96.91	hypothetical protein Csa_1G328390 [Cucumis sativus]	[more]
XP_008464352.1	2.9e-19	47.37	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]

BLAST of CsGy1G018800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G018800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G018800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWU7\|A0A0A0LWU7_CUCSA	7.4e-40	96.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1	[more]
tr\|A0A1S3CLQ1\|A0A1S3CLQ1_CUCME	1.9e-19	47.37	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G018800.1	CsGy1G018800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..95
None	No IPR available	COILS	Coil	Coil	coord: 16..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G018800	Csa1G328390	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G018800	CSPI01G18790	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G018800	CsaV3_1G030060	Cucumber (Chinese Long) v3	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G018800	Cucumber (Gy14) v2	cgybcgybB008
CsGy1G018800	Cucumber (Gy14) v2	cgybcgybB023
CsGy1G018800	Cucurbita maxima (Rimu)	cgybcmaB017
CsGy1G018800	Cucurbita maxima (Rimu)	cgybcmaB059
CsGy1G018800	Cucurbita maxima (Rimu)	cgybcmaB137
CsGy1G018800	Cucurbita moschata (Rifu)	cgybcmoB016
CsGy1G018800	Cucurbita moschata (Rifu)	cgybcmoB044
CsGy1G018800	Cucurbita moschata (Rifu)	cgybcmoB055
CsGy1G018800	Cucurbita moschata (Rifu)	cgybcmoB129
CsGy1G018800	Cucurbita pepo (Zucchini)	cgybcpeB031
CsGy1G018800	Cucurbita pepo (Zucchini)	cgybcpeB044
CsGy1G018800	Cucurbita pepo (Zucchini)	cgybcpeB114
CsGy1G018800	Cucurbita pepo (Zucchini)	cgybcpeB146
CsGy1G018800	Cucumber (Chinese Long) v2	cgybcuB016
CsGy1G018800	Cucumber (Chinese Long) v2	cgybcuB028
CsGy1G018800	Bottle gourd (USVL1VR-Ls)	cgyblsiB057
CsGy1G018800	Bottle gourd (USVL1VR-Ls)	cgyblsiB007
CsGy1G018800	Melon (DHL92) v3.5.1	cgybmeB051
CsGy1G018800	Melon (DHL92) v3.5.1	cgybmeB066
CsGy1G018800	Melon (DHL92) v3.5.1	cgybmeB074
CsGy1G018800	Melon (DHL92) v3.6.1	cgybmedB047
CsGy1G018800	Melon (DHL92) v3.6.1	cgybmedB062
CsGy1G018800	Watermelon (Charleston Gray)	cgybwcgB007
CsGy1G018800	Watermelon (Charleston Gray)	cgybwcgB065
CsGy1G018800	Watermelon (97103) v1	cgybwmB075
CsGy1G018800	Watermelon (97103) v1	cgybwmB081
CsGy1G018800	Wild cucumber (PI 183967)	cgybcpiB014
CsGy1G018800	Silver-seed gourd	carcgybB0039
CsGy1G018800	Silver-seed gourd	carcgybB0133
CsGy1G018800	Silver-seed gourd	carcgybB0570
CsGy1G018800	Cucumber (Chinese Long) v3	cgybcucB015
CsGy1G018800	Cucumber (Chinese Long) v3	cgybcucB032
CsGy1G018800	Watermelon (97103) v2	cgybwmbB020
CsGy1G018800	Watermelon (97103) v2	cgybwmbB065
CsGy1G018800	Wax gourd	cgybwgoB003
CsGy1G018800	Wax gourd	cgybwgoB096