CsGy1G017890 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G017890
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr1 : 16038270 .. 16038613 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTTGAAGGCCATTTTAAACTGCCATAATCTACAAGTAACTGCCATTTGTTCAATCCAAATCCTCACATCTTCCCGCTTTCTTCTCCAATACCCCTTTTTCTTCCTCTCTTTGTTCTAATTCCAAATCCCCCAAACCAATTTCAGTACCACGGGCTTCTCACAAAGAAAATCCAAAAACAGAGGAAGAACAGAGCATCGGCAATGACAGGATCACAGCAAGTAAATGCCACCGGCGACAGAATGAACGGCCCATCTCTGGCTCAGCACACCACTGAGGTTCTTCACCAGCGCAAGAAGCTTCCTGTTTGTCCAATGAGAATGGCGATTGGCTACTAA

mRNA sequence

ATGGCTGATTTGAAGGCCATTTTAAACTGCCATAATCTACAATACCACGGGCTTCTCACAAAGAAAATCCAAAAACAGAGGAAGAACAGAGCATCGGCAATGACAGGATCACAGCAAGTAAATGCCACCGGCGACAGAATGAACGGCCCATCTCTGGCTCAGCACACCACTGAGGTTCTTCACCAGCGCAAGAAGCTTCCTGTTTGTCCAATGAGAATGGCGATTGGCTACTAA

Coding sequence (CDS)

ATGGCTGATTTGAAGGCCATTTTAAACTGCCATAATCTACAATACCACGGGCTTCTCACAAAGAAAATCCAAAAACAGAGGAAGAACAGAGCATCGGCAATGACAGGATCACAGCAAGTAAATGCCACCGGCGACAGAATGAACGGCCCATCTCTGGCTCAGCACACCACTGAGGTTCTTCACCAGCGCAAGAAGCTTCCTGTTTGTCCAATGAGAATGGCGATTGGCTACTAA

Protein sequence

MADLKAILNCHNLQYHGLLTKKIQKQRKNRASAMTGSQQVNATGDRMNGPSLAQHTTEVLHQRKKLPVCPMRMAIGY

Homology

[Close]

BLAST of CsGy1G017890 vs. NCBI nr
Match: XP_022134574.1 (uncharacterized protein LOC111006810 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-10
Identity = 42/71 (59.15%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 14  QYHGLLTKKIQKQRK--------NRASAMTGSQQVNATGDRMNGPSLAQHTTEVLHQRKK 73
           + H +  KKI+ QRK        NR SAM GSQQ       MNGPS AQHTTEVL QRKK
Sbjct: 38  EQHRVHRKKIENQRKNSSDQTEQNRTSAMAGSQQ-------MNGPSPAQHTTEVLSQRKK 97

Query: 74  LPVCPMRMAIG 77
           LPVCPM+MA+G
Sbjct: 98  LPVCPMKMAVG 101

[Close]

BLAST of CsGy1G017890 vs. NCBI nr
Match: PQP98417.1 (hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 28/45 (62.22%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 34 MTGSQQVNAT--GDRMNGPSLAQHTTEVLHQRKKLPVCPMRMAIG 77
          M G QQV A      M GPS AQH+TEVLHQ  KL  CPMRMA+G
Sbjct: 1  MAGPQQVKAAAGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALG 45

[Close]

BLAST of CsGy1G017890 vs. NCBI nr
Match: PQP99204.1 (hypothetical protein Pyn_32198 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 28/45 (62.22%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 34 MTGSQQVNAT--GDRMNGPSLAQHTTEVLHQRKKLPVCPMRMAIG 77
          M G QQV A      M GPS AQH+TEVLHQ  KL  CPMRMA+G
Sbjct: 1  MAGPQQVKAAAGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALG 45

[Close]

BLAST of CsGy1G017890 vs. NCBI nr
Match: ONH98720.1 (hypothetical protein PRUPE_7G263500 [Prunus persica])

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-04
Identity = 27/45 (60.00%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 34 MTGSQQVNAT--GDRMNGPSLAQHTTEVLHQRKKLPVCPMRMAIG 77
          M G QQV A      M GPS AQH+TEVLHQ  K+  CPMRMA+G
Sbjct: 1  MAGPQQVKAAAGAQGMKGPSPAQHSTEVLHQTSKVSFCPMRMALG 45

[Close]

BLAST of CsGy1G017890 vs. TrEMBL
Match: tr|A0A251NHA2|A0A251NHA2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G263500 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.1e-04
Identity = 27/45 (60.00%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 34 MTGSQQVNAT--GDRMNGPSLAQHTTEVLHQRKKLPVCPMRMAIG 77
          M G QQV A      M GPS AQH+TEVLHQ  K+  CPMRMA+G
Sbjct: 1  MAGPQQVKAAAGAQGMKGPSPAQHSTEVLHQTSKVSFCPMRMALG 45

The following BLAST results are available for this feature:

BLAST of CsGy1G017890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134574.1	5.8e-10	59.15	uncharacterized protein LOC111006810 [Momordica charantia]	[more]
PQP98417.1	2.8e-04	62.22	hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora]	[more]
PQP99204.1	2.8e-04	62.22	hypothetical protein Pyn_32198 [Prunus yedoensis var. nudiflora]	[more]
ONH98720.1	6.2e-04	60.00	hypothetical protein PRUPE_7G263500 [Prunus persica]	[more]

BLAST of CsGy1G017890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G017890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G017890 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251NHA2\|A0A251NHA2_PRUPE	4.1e-04	60.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G263500 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G017890.1	CsGy1G017890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..51

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G017890	Cla018737	Watermelon (97103) v1	cgybwmB079
CsGy1G017890	MELO3C010217	Melon (DHL92) v3.5.1	cgybmeB049
CsGy1G017890	ClCG06G012430	Watermelon (Charleston Gray)	cgybwcgB063
CsGy1G017890	Lsi06G011520	Bottle gourd (USVL1VR-Ls)	cgyblsiB071
CsGy1G017890	MELO3C010217.2	Melon (DHL92) v3.6.1	cgybmedB045
CsGy1G017890	Cla97C06G121670	Watermelon (97103) v2	cgybwmbB063
CsGy1G017890	Bhi02G000684	Wax gourd	cgybwgoB093

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G017890	Watermelon (97103) v2	cgybwmbB060
CsGy1G017890	Wax gourd	cgybwgoB072
CsGy1G017890	Cucumber (Gy14) v2	cgybcgybB026
CsGy1G017890	Cucurbita maxima (Rimu)	cgybcmaB003
CsGy1G017890	Cucurbita maxima (Rimu)	cgybcmaB014
CsGy1G017890	Cucurbita maxima (Rimu)	cgybcmaB039
CsGy1G017890	Cucurbita maxima (Rimu)	cgybcmaB109
CsGy1G017890	Cucurbita moschata (Rifu)	cgybcmoB004
CsGy1G017890	Cucurbita moschata (Rifu)	cgybcmoB014
CsGy1G017890	Cucurbita moschata (Rifu)	cgybcmoB037
CsGy1G017890	Cucurbita pepo (Zucchini)	cgybcpeB040
CsGy1G017890	Cucurbita pepo (Zucchini)	cgybcpeB104
CsGy1G017890	Cucurbita pepo (Zucchini)	cgybcpeB109
CsGy1G017890	Cucurbita pepo (Zucchini)	cgybcpeB141
CsGy1G017890	Cucumber (Chinese Long) v2	cgybcuB006
CsGy1G017890	Cucumber (Chinese Long) v2	cgybcuB030
CsGy1G017890	Bottle gourd (USVL1VR-Ls)	cgyblsiB060
CsGy1G017890	Melon (DHL92) v3.5.1	cgybmeB072
CsGy1G017890	Melon (DHL92) v3.6.1	cgybmedB068
CsGy1G017890	Watermelon (Charleston Gray)	cgybwcgB061
CsGy1G017890	Watermelon (97103) v1	cgybwmB039
CsGy1G017890	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G017890	Wild cucumber (PI 183967)	cgybcpiB027
CsGy1G017890	Silver-seed gourd	carcgybB0132
CsGy1G017890	Silver-seed gourd	carcgybB0508
CsGy1G017890	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G017890	Cucumber (Chinese Long) v3	cgybcucB035