CsGy1G016810 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G016810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	30S ribosomal protein S16, chloroplastic
Location	Chr1 : 14131742 .. 14132372 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAAGGCAAGGATAAAGGATCCCGGAACAAGTAAAAATCTTTTTCAATTGTCTCAATAACTAAACTAGATCAGAATGAAGAATCGAAATAGATTCTAACGGAGACAGGCAAAAATAAAGAGGTTAGAGACCGCTCAATAAATGAAATGCTTAAGCTTAAGGTTTTTTTCCTTTGCGTGAGAGTTATCCAACTTGAGTTATGGGGATAAGAATGAGTTTTTTTTTCAAAAAGAAAAACAAAAGAATAAGAAAAAATTATTTAAATCATAGTCTAATTGATTTAATAATCTATGGATCTATTTGACATTAATTAGAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGGGGGTATTGTTAATTTACATCTATCCCAATGAGCTGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCGATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

mRNA sequence

ATGATTCAAGGCAAGGATAAAGGATCCCGGAACAAAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGGGGCTGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCGATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

Coding sequence (CDS)

ATGATTCAAGGCAAGGATAAAGGATCCCGGAACAAAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGGGGCTGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCGATTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

Protein sequence

MIQGKDKGSRNKILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Homology

[Close]

BLAST of CsGy1G016810 vs. NCBI nr
Match: YP_247581.1 (ribosomal protein S16 [Cucumis sativus] >CAJ00740.1 ribosomal protein S16 (chloroplast) [Cucumis sativus] >ABI97400.1 ribosomal protein S16 (chloroplast) [Cucumis sativus] >AHM88696.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM88755.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM88813.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM88870.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM88928.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM88986.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89045.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89104.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89163.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89222.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89281.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89341.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89400.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89459.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89518.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89578.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89637.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89696.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89755.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89814.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89873.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89932.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM89991.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90050.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90109.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90168.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90227.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90286.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90345.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90404.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90463.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90522.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90581.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90640.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90699.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90758.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90817.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90876.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90935.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM90994.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM91053.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >AHM91286.1 ribosomal protein S16 (chloroplast) [Lagenaria siceraria] >ALF03283.1 ribosomal protein S16 (chloroplast) [Cucumis sativus var. hardwickii] >ANF28359.1 ribosomal protein S16 (chloroplast) [Cucumis sativus var. hardwickii] >ARQ16061.1 ribosomal protein S16 (chloroplast) [Cucumis sativus] >ARQ16144.1 ribosomal protein S16 (chloroplast) [Cucumis sativus] >ARQ16227.1 ribosomal protein S16 (chloroplast) [Cucumis sativus] >ARQ16310.1 ribosomal protein S16 (chloroplast) [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]

BLAST of CsGy1G016810 vs. NCBI nr
Match: Q2QDA6.1 (RecName: Full=30S ribosomal protein S16, chloroplastic >AAZ94634.1 ribosomal protein S16 (chloroplast) [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 16  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 75

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 76  GVFTELHLNQ 85

[Close]

BLAST of CsGy1G016810 vs. NCBI nr
Match: YP_009505062.1 (ribosomal protein S16 (chloroplast) [Cucurbita pepo] >AWX90370.1 ribosomal protein S16 (chloroplast) [Cucurbita pepo])

HSP 1 Score: 145.6 bits (366), Expect = 9.6e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVR+RREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 17  AVYRIIAIDVRARREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 76

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 77  GVFTELHLNQ 86

[Close]

BLAST of CsGy1G016810 vs. NCBI nr
Match: YP_009317368.1 (ribosomal protein S16 (chloroplast) [Coccinia grandis] >AOX48741.1 ribosomal protein S16 (chloroplast) [Coccinia grandis] >AOX48826.1 ribosomal protein S16 (chloroplast) [Coccinia grandis])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI KKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDIFKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]

BLAST of CsGy1G016810 vs. NCBI nr
Match: YP_009004027.1 (ribosomal protein S16 [Cucumis hystrix] >AHJ61369.1 ribosomal protein S16 (plastid) [Cucumis hystrix] >AVE15313.1 ribosomal protein S16 (chloroplast) [Cucumis sativus var. sativus])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 37  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAG 96
           VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAG
Sbjct: 14  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAG 73

Query: 97  VFTELHLNQ 106
           VFTELHLNQ
Sbjct: 74  VFTELHLNQ 82

[Close]

BLAST of CsGy1G016810 vs. TAIR10
Match: ATCG00050.1 (ribosomal protein S16)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-24
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRI+AIDVR RREGRDL KVGFYDPI NQT+LN+ AIL FL+KGAQPT T HDI KKA
Sbjct: 15  AVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKGAQPTRTAHDISKKA 74

Query: 96  GVFTE 101
           G+FTE
Sbjct: 75  GIFTE 79

[Close]

BLAST of CsGy1G016810 vs. TAIR10
Match: AT4G34620.1 (small subunit ribosomal protein 16)

HSP 1 Score: 57.4 bits (137), Expect = 6.2e-09
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 38 YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDIL 97
          YR++  D +SRR+G+ +  +GFYDP++     ++  L    I Y+L  GAQPT TV  +L
Sbjct: 18 YRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIKYWLSVGAQPTDTVESML 77

[Close]

BLAST of CsGy1G016810 vs. TAIR10
Match: AT5G56940.1 (Ribosomal protein S16 family protein)

HSP 1 Score: 45.1 bits (105), Expect = 3.2e-05
Identity = 22/65 (33.85%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 38 YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDIL 97
          +R++A D RS R+G+ L  +G+++P+  Q       L    I Y+L  GAQP+  V  +L
Sbjct: 18 FRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIKYWLSVGAQPSDPVQRLL 77

[Close]

BLAST of CsGy1G016810 vs. Swiss-Prot
Match: sp|Q2QDA6|RR16_CUCSA (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 16  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 75

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 76  GVFTELHLNQ 85

[Close]

BLAST of CsGy1G016810 vs. Swiss-Prot
Match: sp|Q2L8Y7|RR16_GOSHI (30S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps16 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-32
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRI+AIDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKA
Sbjct: 15  AVYRIVAIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKGAQPTATVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTEL LNQ
Sbjct: 75  GVFTELTLNQ 84

[Close]

BLAST of CsGy1G016810 vs. Swiss-Prot
Match: sp|A0ZZ17|RR16_GOSBA (30S ribosomal protein S16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps16 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-31
Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRI+ IDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKA
Sbjct: 15  AVYRIVVIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKGAQPTATVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTEL LNQ
Sbjct: 75  GVFTELTLNQ 84

[Close]

BLAST of CsGy1G016810 vs. Swiss-Prot
Match: sp|Q0ZJ38|RR16_VITVI (30S ribosomal protein S16, chloroplastic OS=Vitis vinifera OX=29760 GN=rps16 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.4e-31
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRI+AID RSRREGRDLRKVGFYDPIKNQTY NVPAILYFLEKGAQPTGTVHDI KKA
Sbjct: 15  AVYRIVAIDARSRREGRDLRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTGTVHDISKKA 74

Query: 96  GVFTELHLNQ 106
            VFTEL LNQ
Sbjct: 75  EVFTELRLNQ 84

[Close]

BLAST of CsGy1G016810 vs. Swiss-Prot
Match: sp|Q6EW66|RR16_NYMAL (30S ribosomal protein S16, chloroplastic OS=Nymphaea alba OX=34301 GN=rps16 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-30
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           A YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI KKA
Sbjct: 15  ATYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDISKKA 74

Query: 96  GVFTELHLNQ 106
            VF EL +NQ
Sbjct: 75  EVFKELRVNQ 84

[Close]

BLAST of CsGy1G016810 vs. TrEMBL
Match: tr|X2F3D0|X2F3D0_LAGSI (30S ribosomal protein S16, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps16 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.8e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]

BLAST of CsGy1G016810 vs. TrEMBL
Match: tr|A0A218KG12|A0A218KG12_CUCSA (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rps16 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.8e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]

BLAST of CsGy1G016810 vs. TrEMBL
Match: tr|A0A1X9Q1R7|A0A1X9Q1R7_CUCSA (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.8e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

[Close]

BLAST of CsGy1G016810 vs. TrEMBL
Match: tr|W8E1Y8|W8E1Y8_9ROSI (Ribosomal protein S16 OS=Cucumis hystrix OX=396994 GN=rps16 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.3e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 37  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAG 96
           VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAG
Sbjct: 14  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAG 73

Query: 97  VFTELHLNQ 106
           VFTELHLNQ
Sbjct: 74  VFTELHLNQ 82

[Close]

BLAST of CsGy1G016810 vs. TrEMBL
Match: tr|G3ETW7|G3ETW7_CUCME (30S ribosomal protein S16, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=rps16 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 36  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 95
           AVYRIIAIDVR RREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA
Sbjct: 15  AVYRIIAIDVRCRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKA 74

Query: 96  GVFTELHLNQ 106
           GVFTELHLNQ
Sbjct: 75  GVFTELHLNQ 84

The following BLAST results are available for this feature:

BLAST of CsGy1G016810 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_247581.1	4.3e-32	100.00	ribosomal protein S16 [Cucumis sativus] >CAJ00740.1 ribosomal protein S16 (chlor...	[more]
Q2QDA6.1	4.3e-32	100.00	RecName: Full=30S ribosomal protein S16, chloroplastic >AAZ94634.1 ribosomal pro...	[more]
YP_009505062.1	9.6e-32	98.57	ribosomal protein S16 (chloroplast) [Cucurbita pepo] >AWX90370.1 ribosomal prote...	[more]
YP_009317368.1	1.2e-31	98.57	ribosomal protein S16 (chloroplast) [Coccinia grandis] >AOX48741.1 ribosomal pro...	[more]
YP_009004027.1	1.2e-31	100.00	ribosomal protein S16 [Cucumis hystrix] >AHJ61369.1 ribosomal protein S16 (plast...	[more]

BLAST of CsGy1G016810 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00050.1	1.1e-24	80.00	ribosomal protein S16	[more]
AT4G34620.1	6.2e-09	40.00	small subunit ribosomal protein 16	[more]
AT5G56940.1	3.2e-05	33.85	Ribosomal protein S16 family protein	[more]

BLAST of CsGy1G016810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2QDA6\|RR16_CUCSA	1.4e-34	100.00	30S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=...	[more]
sp\|Q2L8Y7\|RR16_GOSHI	5.0e-32	94.29	30S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps16 ...	[more]
sp\|A0ZZ17\|RR16_GOSBA	1.5e-31	92.86	30S ribosomal protein S16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
sp\|Q0ZJ38\|RR16_VITVI	9.4e-31	91.43	30S ribosomal protein S16, chloroplastic OS=Vitis vinifera OX=29760 GN=rps16 PE=...	[more]
sp\|Q6EW66\|RR16_NYMAL	1.6e-30	91.43	30S ribosomal protein S16, chloroplastic OS=Nymphaea alba OX=34301 GN=rps16 PE=3...	[more]

BLAST of CsGy1G016810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|X2F3D0\|X2F3D0_LAGSI	2.8e-32	100.00	30S ribosomal protein S16, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps16...	[more]
tr\|A0A218KG12\|A0A218KG12_CUCSA	2.8e-32	100.00	30S ribosomal protein S16, chloroplastic OS=Cucumis sativus var. hardwickii OX=3...	[more]
tr\|A0A1X9Q1R7\|A0A1X9Q1R7_CUCSA	2.8e-32	100.00	30S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=...	[more]
tr\|W8E1Y8\|W8E1Y8_9ROSI	8.3e-32	100.00	Ribosomal protein S16 OS=Cucumis hystrix OX=396994 GN=rps16 PE=3 SV=1	[more]
tr\|G3ETW7\|G3ETW7_CUCME	1.1e-31	98.57	30S ribosomal protein S16, chloroplastic OS=Cucumis melo subsp. melo OX=412675 G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR023803	Ribosomal_S16_dom_sf
IPR000307	Ribosomal_S16

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G016810.1	CsGy1G016810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000307	Ribosomal protein S16	PFAM	PF00886	Ribosomal_S16	coord: 37..85 e-value: 2.7E-13 score: 49.6
IPR000307	Ribosomal protein S16	TIGRFAM	TIGR00002	TIGR00002	coord: 36..98 e-value: 5.0E-22 score: 75.7
IPR000307	Ribosomal protein S16	PANTHER	PTHR12919	30S RIBOSOMAL PROTEIN S16	coord: 36..102
IPR023803	Ribosomal protein S16 domain superfamily	GENE3D	G3DSA:3.30.1320.10		coord: 34..105 e-value: 5.5E-17 score: 63.7
IPR023803	Ribosomal protein S16 domain superfamily	SUPERFAMILY	SSF54565	Ribosomal protein S16	coord: 36..102
None	No IPR available	PANTHER	PTHR12919:SF20	37S RIBOSOMAL PROTEIN S16, MITOCHONDRIAL	coord: 36..102

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G016810	Cucurbita maxima (Rimu)	cgybcmaB010
CsGy1G016810	Cucurbita maxima (Rimu)	cgybcmaB026
CsGy1G016810	Cucurbita maxima (Rimu)	cgybcmaB033
CsGy1G016810	Cucurbita moschata (Rifu)	cgybcmoB011
CsGy1G016810	Cucurbita moschata (Rifu)	cgybcmoB031
CsGy1G016810	Cucurbita pepo (Zucchini)	cgybcpeB050
CsGy1G016810	Cucurbita pepo (Zucchini)	cgybcpeB057
CsGy1G016810	Cucurbita pepo (Zucchini)	cgybcpeB124
CsGy1G016810	Cucurbita pepo (Zucchini)	cgybcpeB131
CsGy1G016810	Cucumber (Chinese Long) v2	cgybcuB009
CsGy1G016810	Cucumber (Chinese Long) v2	cgybcuB026
CsGy1G016810	Bottle gourd (USVL1VR-Ls)	cgyblsiB065
CsGy1G016810	Melon (DHL92) v3.5.1	cgybmeB056
CsGy1G016810	Melon (DHL92) v3.6.1	cgybmedB051
CsGy1G016810	Watermelon (Charleston Gray)	cgybwcgB082
CsGy1G016810	Watermelon (97103) v1	cgybwmB097
CsGy1G016810	Silver-seed gourd	carcgybB0035
CsGy1G016810	Silver-seed gourd	carcgybB0135
CsGy1G016810	Silver-seed gourd	carcgybB0136
CsGy1G016810	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G016810	Watermelon (97103) v2	cgybwmbB080
CsGy1G016810	Wax gourd	cgybwgoB115