CsGy1G016670 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCCATGTTGCTGAGGCCTTCATTGAGAAAAATTATCACCCAACAGTCATTTGTCGGGGTAATTTTTGTTTTTTAGCCAGTGATTTCATCTTGGATATTGATCATAACGTGATCCTTATAAACATCCATTTCCTTTGTTACAGCCTATAACAAAGCTCTAGAGGATGCACTTGCTGTGCTTGATAAAATAGCTATGGACATCGATGTGAAAGATCGTAAGTTACTTGAATTCCCTTACCTTTGACTTGTTGAGTGAAATGGCCTTCAGTACAATCATGTACTCATGTCTACTAACTTAGACACCAGATGCTAAACCAAATGCTTCAATATATTTCCTCTCAAACAATTACTGGTTTATTCCATTAAAAACTACAATAATTGGAAAGATCTCTACTCTACTAATGACTATCATGTGACAGGCACTGCTATGTTGGGGCTGGTCAAAAGCTGCATAGGCACCAAGTTCACTAGTCAATTTGGAGATCTGATTGCTGTAAGAATTTTAGTTCATTGCCTTGTGACATTGTTGTATGATTTCATTTATTTGTATATTTTCAATCTAACACGTGAATCATTTTTAGAAGTTGGAAAATGATCCATCTCTATAATGGCTATGTAGATTAGTTTCTGTAGACTAGTTGAAATATTGATTGATTGGTTCATCCACTCTTTCTTTTAAGGATGCCAGATCTTTAGATTCAGTGTCAAGATTTTTAGGAGGTTGTTGCAGAAGACAACTTAAATAGATAATTTGGTTATTTTCAGATATTTTTGGCCTATAAGGATGCCAGGTCTTTATATTTTTGATGTTATAAGTTTTTAGGAGGAGATTTGTCTAGTAGACCCGTTGCTTGATTTATTTTCATTTGCAGAAGATACTAGTCATGTGTAGCCTACAAGAAGTTATAATCTTATTTGCAGATAGTCCAAGTTTTCTAGTGAATTTAAATTTAATTATTTCAAGGGTTTTTTTCTTTTTTCTTTTTCAAGAGTTGAATATTGAAGAAAATTTAGGCTGTTATTTGTGGATAGTGTATAGACTATGTGCATTTAAAATCTTATTTGTACTCTAAAGATCTAATTGTGATGATCAAGGGATTCCCTCTCCATTTGTAATGTAGAGGTGTTTTTTTGTGGCAAGTTAGAGTGAATCATTCATTTCAGTGTCTTTTTTTCCTTTTCTTTTCTTTTCTCTTCTCTTTTCTTGCTTAATTCGACTCTAAGCCGATAAAAAGGCACATCGGAAAAAGATTCAGGCACTGTTCATGAGATTCTCTAGTCTTGAAATTGCTAGATAATTCATGTTAACTAAGATTTATTACCATAAGTCACATTGACTTAGCTTCTAAGTTTATCCTCTCCCATCTACAGGATCGAGATTCTCTGCCATGACATCAATGTGCACATTCCCCACCATATTTCTCCAAGAATACCGAGTTACAACTTACGGGCAGCTCATAAGTCTCTTCAAGAAAACTGGGGAAAGGTAATGGGGTTAAACCAAATGCATATGTACGTAGTTCGATGTTCAGATCTTGCAAAATCTAATGGTTGCCTTGTTTATTGCATATATTTTCCCCCATTGATGCTAATAATCTAGTTCTTTTCTTCCACTTTGTTACACATTCTGTAGCATCTGAATGAGGCTTCATGGAATTGGCGATTAATGAAGACGATCATGACGATATGCCATGTATACAACAAAGAGGAAAATGACCGACTCAATAAAGAAGATTCTTATCCCATTACATTCCTCAAGAAAGTCATGCCTGATCTTGCTTGA ATGCTCCATGTTGCTGAGGCCTTCATTGAGAAAAATTATCACCCAACAGTCATTTGTCGGGCCTATAACAAAGCTCTAGAGGATGCACTTGCTGTGCTTGATAAAATAGCTATGGACATCGATGTGAAAGATCGCACTGCTATGTTGGGGCTGGTCAAAAGCTGCATAGGCACCAAGTTCACTAGTCAATTTGGAGATCTGATTGCTATATTTTTGGCCTATAAGGATGCCAGGATCGAGATTCTCTGCCATGACATCAATGTGCACATTCCCCACCATATTTCTCCAAGAATACCGAGTTACAACTTACGGGCAGCTCATAAGTCTCTTCAAGAAAACTGGGGAAAGCATCTGAATGAGGCTTCATGGAATTGGCGATTAATGAAGACGATCATGACGATATGCCATGTATACAACAAAGAGGAAAATGACCGACTCAATAAAGAAGATTCTTATCCCATTACATTCCTCAAGAAAGTCATGCCTGATCTTGCTTGA ATGCTCCATGTTGCTGAGGCCTTCATTGAGAAAAATTATCACCCAACAGTCATTTGTCGGGCCTATAACAAAGCTCTAGAGGATGCACTTGCTGTGCTTGATAAAATAGCTATGGACATCGATGTGAAAGATCGCACTGCTATGTTGGGGCTGGTCAAAAGCTGCATAGGCACCAAGTTCACTAGTCAATTTGGAGATCTGATTGCTATATTTTTGGCCTATAAGGATGCCAGGATCGAGATTCTCTGCCATGACATCAATGTGCACATTCCCCACCATATTTCTCCAAGAATACCGAGTTACAACTTACGGGCAGCTCATAAGTCTCTTCAAGAAAACTGGGGAAAGCATCTGAATGAGGCTTCATGGAATTGGCGATTAATGAAGACGATCATGACGATATGCCATGTATACAACAAAGAGGAAAATGACCGACTCAATAAAGAAGATTCTTATCCCATTACATTCCTCAAGAAAGTCATGCCTGATCTTGCTTGA MLHVAEAFIEKNYHPTVICRAYNKALEDALAVLDKIAMDIDVKDRTAMLGLVKSCIGTKFTSQFGDLIAIFLAYKDARIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGKHLNEASWNWRLMKTIMTICHVYNKEENDRLNKEDSYPITFLKKVMPDLA
BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_004146685.1 (PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X1 [Cucumis sativus] >KGN65155.1 hypothetical protein Csa_1G255170 [Cucumis sativus]) HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43 Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_011655551.1 (PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43 Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_008443861.1 (PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Cucumis melo]) HSP 1 Score: 182.2 bits (461), Expect = 1.4e-42 Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_022930407.1 (omega-6 fatty acid desaturase, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41 Identity = 84/91 (92.31%), Postives = 85/91 (93.41%), Query Frame = 0
BLAST of CsGy1G016670 vs. NCBI nr
Match: XP_023529482.1 (omega-6 fatty acid desaturase, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 176.8 bits (447), Expect = 6.1e-41 Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = 0
BLAST of CsGy1G016670 vs. TAIR10
Match: AT4G30950.1 (fatty acid desaturase 6) HSP 1 Score: 155.2 bits (391), Expect = 3.4e-38 Identity = 71/89 (79.78%), Postives = 79/89 (88.76%), Query Frame = 0
BLAST of CsGy1G016670 vs. TAIR10
Match: AT5G26360.1 (TCP-1/cpn60 chaperonin family protein) HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28 Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0
BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|P48627|FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus OX=3708 PE=1 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 7.3e-38 Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0
BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|P46312|FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FAD6 PE=1 SV=2) HSP 1 Score: 155.2 bits (391), Expect = 6.2e-37 Identity = 71/89 (79.78%), Postives = 79/89 (88.76%), Query Frame = 0
BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|P48628|FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30 Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 0
BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|P48629|FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea OX=3562 GN=FAD6 PE=1 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28 Identity = 58/91 (63.74%), Postives = 74/91 (81.32%), Query Frame = 0
BLAST of CsGy1G016670 vs. Swiss-Prot
Match: sp|Q84WV1|TCPG_ARATH (T-complex protein 1 subunit gamma OS=Arabidopsis thaliana OX=3702 GN=CCT3 PE=1 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27 Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0
BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|A0A0A0LTB1|A0A0A0LTB1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255170 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43 Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|A0A1S3B9S5|A0A1S3B9S5_CUCME (omega-6 fatty acid desaturase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487358 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 9.6e-43 Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|A0A2P6RI95|A0A2P6RI95_ROSCH (Putative acyl-CoA (9+3)-desaturase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0085771 PE=4 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 7.1e-38 Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 0
BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|E6Y9A8|E6Y9A8_ARAHY (Chloroplast omega-6 fatty acid desaturase OS=Arachis hypogaea OX=3818 GN=fad6 PE=2 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37 Identity = 76/91 (83.52%), Postives = 82/91 (90.11%), Query Frame = 0
BLAST of CsGy1G016670 vs. TrEMBL
Match: tr|A0A2R6QS37|A0A2R6QS37_ACTCH (Omega-6 fatty acid desaturase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14552 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36 Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |