CsGy1G015240 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G015240
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	rhodanese-like domain-containing protein 6
Location	Chr1 : 11207756 .. 11208799 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGTTGGTGTGTGATAATTGCCAGGTCTGCTATAATAGTTAATCTCTCTGAACACATTCTCATCTGGCTTGCTGTTCCCTGTTCTATTTAGTGATTCTTTTAGTTATAACTCGAATTCTAAAGTTTGTTTCTCCTGTCCTGTTATCATATCATTTTTTTAATCACCTTTAGCTTTCTTGGGATTTGTGGTATCCTGCTTCTGCATCCTGTTATTGCGGCTCAGAAAAAGGAGACCCTATATGTTTGTGAGCTGTGTAGGAAGCATGGCAAGGAGGGTGAGGTGATTTCGCAATTCCAGAGCTCCAAATCCGAAGTAGTCTTGCTGCAAAGTGAACTTGAAAATGGTTCCCAGCAACTTCCATGGAGTAACGGTAAGGTCTGTTAATTCTTCTATGACTTCTTGCATGTGCAAGGAATATATGGACCTAATATATTATGATGTTATTTGAATGATCAGTACATTGCTCAGTTAATATCATCACAAAAATCAACTCCTTGATTCAGAGTTTGTATGAGAATTCTTCTAGAATAACTGTTTATAGCTAAAAGCATTTTGATCCCTATGAGGTGCTTATTGCTTAATAACAACTCATTTCAACGTTCACTTTTTACACTCTTAAAAGTGCTTTTGAATTCTTTCTAACTCAAGCACTCCAAAAACATTTTGTCAGCGTCTTTCAAGGCACTTTAAATGTTTTTATTTATATTTTATATTTTTTACCAAAGCACTTGTACCTCACTCTTAGACAATAAACACGAAGATGAGGGCCAAAATATGTGATTATCACTGTCTTTCCACACTAAGCCCCAACCAGAATCTGTTAGCTCTTCAAGCCTTCATGAGCAATTAATTGCTTTATTACAGAATCCTCAATGTGCTGTTCATGTTTTCTATCAAATCATATTTCTGAGCATCAGCAATCTGATATGGAATTTAAAGTACTGCCTTGCCTTTCCATTTTGAGCATAAGAGTTGGAAACGAAATCATTCTTCATTCTTTAATTGGTCTGCAATTCAAACTCTTATTCAGGTTGTAG

mRNA sequence

ATGCTTGTGTTGGTGTGTGATAATTGCCAGAAAAAGGAGACCCTATATGTTTGTGAGCTGTGTAGGAAGCATGGCAAGGAGGGTGAGGTGATTTCGCAATTCCAGAGCTCCAAATCCGAAGTAGTCTTGCTGCAAAGTGAACTTGAAAATGGTTCCCAGCAACTTCCATGGAGTAACGGTAAGAATCCTCAATGTGCTGTTCATGTTTTCTATCAAATCATATTTCTGAGCATCAGCAATCTGATATGGAATTTAAAGTTGTAG

Coding sequence (CDS)

ATGCTTGTGTTGGTGTGTGATAATTGCCAGAAAAAGGAGACCCTATATGTTTGTGAGCTGTGTAGGAAGCATGGCAAGGAGGGTGAGGTGATTTCGCAATTCCAGAGCTCCAAATCCGAAGTAGTCTTGCTGCAAAGTGAACTTGAAAATGGTTCCCAGCAACTTCCATGGAGTAACGGTAAGAATCCTCAATGTGCTGTTCATGTTTTCTATCAAATCATATTTCTGAGCATCAGCAATCTGATATGGAATTTAAAGTTGTAG

Protein sequence

MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNGKNPQCAVHVFYQIIFLSISNLIWNLKL

Homology

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BLAST of CsGy1G015240 vs. NCBI nr
Match: XP_011654858.1 (PREDICTED: rhodanese-like domain-containing protein 6 isoform X2 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 60
           MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG
Sbjct: 301 MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 360

Query: 61  K 62
           K
Sbjct: 361 K 361

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BLAST of CsGy1G015240 vs. NCBI nr
Match: XP_011654855.1 (PREDICTED: rhodanese-like domain-containing protein 6 isoform X1 [Cucumis sativus] >KGN65012.1 hypothetical protein Csa_1G180760 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 60
           MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG
Sbjct: 301 MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 360

[Close]

BLAST of CsGy1G015240 vs. NCBI nr
Match: XP_022159722.1 (rhodanese-like domain-containing protein 6 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 6.3e-21
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 60
           MLVLVCDNCQKKETLYVCELC+KHGK+G +ISQFQS+KSEVV LQ+EL+ GSQQLPWSNG
Sbjct: 300 MLVLVCDNCQKKETLYVCELCQKHGKDGGLISQFQSTKSEVVSLQNELQIGSQQLPWSNG 359

[Close]

BLAST of CsGy1G015240 vs. NCBI nr
Match: XP_008464312.1 (PREDICTED: rhodanese-like domain-containing protein 6 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 60
           MLVLVCDNCQ+KETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSEL      +PWSNG
Sbjct: 299 MLVLVCDNCQEKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSEL------VPWSNG 352

[Close]

BLAST of CsGy1G015240 vs. NCBI nr
Match: XP_022989360.1 (rhodanese-like domain-containing protein 6 isoform X1 [Cucurbita maxima])

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-18
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 60
           MLVLVCDNCQKK TLYVCELCRK+GK+G  ISQFQS+K EVV  QS+ E GSQQLPWSNG
Sbjct: 331 MLVLVCDNCQKKNTLYVCELCRKNGKDGGPISQFQSTKLEVVSQQSDHEIGSQQLPWSNG 390

Query: 61  K 62
           K
Sbjct: 391 K 391

[Close]

BLAST of CsGy1G015240 vs. TAIR10
Match: AT1G09280.1 (Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645))

HSP 1 Score: 47.4 bits (111), Expect = 5.3e-06
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEV 31
           MLVLVC++C+ K  +Y+CELCRKHGK GEV
Sbjct: 304 MLVLVCNHCRVKGDIYICELCRKHGK-GEV 332

[Close]

BLAST of CsGy1G015240 vs. Swiss-Prot
Match: sp|Q94AC1|STR6_ARATH (Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=STR6 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.6e-05
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEV 31
           MLVLVC++C+ K  +Y+CELCRKHGK GEV
Sbjct: 304 MLVLVCNHCRVKGDIYICELCRKHGK-GEV 332

[Close]

BLAST of CsGy1G015240 vs. TrEMBL
Match: tr|A0A0A0LW43|A0A0A0LW43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G180760 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.3e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 60
           MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG
Sbjct: 301 MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 360

[Close]

BLAST of CsGy1G015240 vs. TrEMBL
Match: tr|A0A1S3CLM0|A0A1S3CLM0_CUCME (rhodanese-like domain-containing protein 6 OS=Cucumis melo OX=3656 GN=LOC103502226 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELENGSQQLPWSNG 60
           MLVLVCDNCQ+KETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSEL      +PWSNG
Sbjct: 299 MLVLVCDNCQEKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSEL------VPWSNG 352

[Close]

BLAST of CsGy1G015240 vs. TrEMBL
Match: tr|A0A2P4HZP6|A0A2P4HZP6_QUESU (Rhodanese-like domain-containing protein 6 OS=Quercus suber OX=58331 GN=CFP56_54837 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELE------NGSQQ 60
           MLVLVCD+C+ +  LYVCELC+K+GK  + +   ++ K++V+ LQ E +        S Q
Sbjct: 360 MLVLVCDSCRMEGALYVCELCQKYGKGVQSVPSLENGKTQVLSLQEEHKLVSLDTKLSPQ 419

Query: 61  LPWSNGK 62
           LPWS+GK
Sbjct: 420 LPWSHGK 426

[Close]

BLAST of CsGy1G015240 vs. TrEMBL
Match: tr|A0A2P4HZT4|A0A2P4HZT4_QUESU (Rhodanese-like domain-containing protein 6 OS=Quercus suber OX=58331 GN=CFP56_54837 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELE------NGSQQ 60
           MLVLVCD+C+ +  LYVCELC+K+GK  + +   ++ K++V+ LQ E +        S Q
Sbjct: 360 MLVLVCDSCRMEGALYVCELCQKYGKGVQSVPSLENGKTQVLSLQEEHKLVSLDTKLSPQ 419

[Close]

BLAST of CsGy1G015240 vs. TrEMBL
Match: tr|A0A2P4HZN3|A0A2P4HZN3_QUESU (Rhodanese-like domain-containing protein 6 OS=Quercus suber OX=58331 GN=CFP56_54837 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1   MLVLVCDNCQKKETLYVCELCRKHGKEGEVISQFQSSKSEVVLLQSELE------NGSQQ 60
           MLVLVCD+C+ +  LYVCELC+K+GK  + +   ++ K++V+ LQ E +        S Q
Sbjct: 306 MLVLVCDSCRMEGALYVCELCQKYGKGVQSVPSLENGKTQVLSLQEEHKLVSLDTKLSPQ 365

The following BLAST results are available for this feature:

BLAST of CsGy1G015240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654858.1	2.2e-26	100.00	PREDICTED: rhodanese-like domain-containing protein 6 isoform X2 [Cucumis sativu...	[more]
XP_011654855.1	1.1e-25	100.00	PREDICTED: rhodanese-like domain-containing protein 6 isoform X1 [Cucumis sativu...	[more]
XP_022159722.1	6.3e-21	85.00	rhodanese-like domain-containing protein 6 [Momordica charantia]	[more]
XP_008464312.1	1.6e-19	86.67	PREDICTED: rhodanese-like domain-containing protein 6 [Cucumis melo]	[more]
XP_022989360.1	1.7e-18	80.33	rhodanese-like domain-containing protein 6 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy1G015240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09280.1	5.3e-06	70.00	Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645)	[more]

BLAST of CsGy1G015240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94AC1\|STR6_ARATH	9.6e-05	70.00	Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=ST...	[more]

BLAST of CsGy1G015240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LW43\|A0A0A0LW43_CUCSA	7.3e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G180760 PE=4 SV=1	[more]
tr\|A0A1S3CLM0\|A0A1S3CLM0_CUCME	1.0e-19	86.67	rhodanese-like domain-containing protein 6 OS=Cucumis melo OX=3656 GN=LOC1035022...	[more]
tr\|A0A2P4HZP6\|A0A2P4HZP6_QUESU	3.4e-07	46.27	Rhodanese-like domain-containing protein 6 OS=Quercus suber OX=58331 GN=CFP56_54...	[more]
tr\|A0A2P4HZT4\|A0A2P4HZT4_QUESU	1.7e-06	45.45	Rhodanese-like domain-containing protein 6 OS=Quercus suber OX=58331 GN=CFP56_54...	[more]
tr\|A0A2P4HZN3\|A0A2P4HZN3_QUESU	1.7e-06	45.45	Rhodanese-like domain-containing protein 6 OS=Quercus suber OX=58331 GN=CFP56_54...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G015240.1	CsGy1G015240.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G015240	Csa1G180760	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G015240	MELO3C026102	Melon (DHL92) v3.5.1	cgybmeB029
CsGy1G015240	CSPI01G15530	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G015240	Lsi02G011510	Bottle gourd (USVL1VR-Ls)	cgyblsiB029
CsGy1G015240	MELO3C026102.2	Melon (DHL92) v3.6.1	cgybmedB022
CsGy1G015240	CsaV3_1G015660	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G015240	Bhi08G000615	Wax gourd	cgybwgoB032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G015240	Cucumber (Gy14) v2	cgybcgybB036
CsGy1G015240	Cucurbita maxima (Rimu)	cgybcmaB068
CsGy1G015240	Cucurbita maxima (Rimu)	cgybcmaB095
CsGy1G015240	Cucurbita maxima (Rimu)	cgybcmaB128
CsGy1G015240	Cucurbita moschata (Rifu)	cgybcmoB065
CsGy1G015240	Cucurbita moschata (Rifu)	cgybcmoB084
CsGy1G015240	Cucurbita moschata (Rifu)	cgybcmoB118
CsGy1G015240	Cucurbita pepo (Zucchini)	cgybcpeB007
CsGy1G015240	Cucurbita pepo (Zucchini)	cgybcpeB024
CsGy1G015240	Cucumber (Chinese Long) v2	cgybcuB041
CsGy1G015240	Bottle gourd (USVL1VR-Ls)	cgyblsiB016
CsGy1G015240	Bottle gourd (USVL1VR-Ls)	cgyblsiB038
CsGy1G015240	Watermelon (Charleston Gray)	cgybwcgB018
CsGy1G015240	Watermelon (Charleston Gray)	cgybwcgB021
CsGy1G015240	Watermelon (97103) v1	cgybwmB048
CsGy1G015240	Watermelon (97103) v1	cgybwmB043
CsGy1G015240	Wild cucumber (PI 183967)	cgybcpiB038
CsGy1G015240	Silver-seed gourd	carcgybB0051
CsGy1G015240	Silver-seed gourd	carcgybB0408
CsGy1G015240	Cucumber (Chinese Long) v3	cgybcucB046
CsGy1G015240	Watermelon (97103) v2	cgybwmbB006
CsGy1G015240	Watermelon (97103) v2	cgybwmbB009
CsGy1G015240	Wax gourd	cgybwgoB042