CsGy1G014890 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G014890
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Zf-CCHC domain-containing protein
Location	Chr1 : 10803447 .. 10804390 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAGTTGACAAAAGAACATGTTGCTCCAGTTAAAATCTCTGACCTCCAGCATGAAATCAAAGTCCTGAAAAAGGAAGTTCATGATAACAAGAAGCAAATATCTTATCTTGAAAATATCATTGAAGCAATTCAAGAACAAATAATTTTAAAAGATAATGTTGAACATGTCGAATCTTCAAATAACGACATCAACATTATTAGTAAGGTCTTTAATAAAAAATGGCTAACCAAGGTCACTTTAAAGTTTAAAGATTACAAATTTGAGGGGACATCCCTAATCGACTCAGGAGCTGATCAAAATGCTATCCAAGAAGGGATAATTCCATCCAAATACTTTGAGATCACTAGGGAAACCCTCAAAGGTGCAAATAACAATGCTTTACAAATAAAGTACAAAATTTTGAAGGTACACATTTACAAAGACGAAGTGTGCTTGAAAAATTCATTTCTCCTCGTCAAAGGCCTTATCGAGAAAGTAAATTTTGGGTACTCCATTTCTTACCCTAATTTATCCATTTACAGTTTTTGATAAGAGTTTATCTTCTCATAAATTTGGCAAAGAAATCATCTTTGAATTCTACAAACCCGTAATTTAATGGTATCTTTCTTCAATTGAGAGCGAGCTTGTCAAAAGTCTCAATCTCATATCAAGGAAAGAGAAGCAGATTGAGTTTCTTCATGACGACATCAAAGGTTGAAAAATCAATGAAGAAATCAATAAGCCTTCGGTCCAAATAAAAATACAATAAGTCCTCAAAAGGATTGATTATGAGATTTGTTCCAATTTTCCTAATGCCTTTTGGGCCAGAAAGAAACACATAGTGAATCTAACCTATGCTGAAAAACTTTCAGGAAGCCCAAATTCCTACAAAGACCAGACCTATTCAAATGAGTAAGGACTTAGTTGACACCTGGTTCAAGGAGATATCAGATCTCTAG

mRNA sequence

ATGAATCAGTTGACAAAAGAACATGTTGCTCCAGTTAAAATCTCTGACCTCCAGCATGAAATCAAAGTCCTGAAAAAGGAAGTTCATGATAACAAGAAGCAAATATCTTATCTTGAAAATATCATTGAAGCAATTCAAGAACAAATAATTTTAAAAGATAATGTTGAACATGTCGAATCTTCAAATAACGACATCAACATTATTAGTAAGGTCTTTAATAAAAAATGGCTAACCAAGGTCACTTTAAAGTTTAAAGATTACAAATTTGAGGGGACATCCCTAATCGACTCAGGAGCTGATCAAAATGCTATCCAAGAAGGGATAATTCCATCCAAATACTTTGAGATCACTAGGGAAACCCTCAAAGGTGCAAATAACAATGCTTTACAAATAAAGTACAAAATTTTGAAGGTACACATTTACAAAGACGAAGTGTGCTTGAAAAATTCATTTCTCCTCGTCAAAGGCCTTATCGAGAAAGAAGCCCAAATTCCTACAAAGACCAGACCTATTCAAATGAGTAAGGACTTAGTTGACACCTGGTTCAAGGAGATATCAGATCTCTAG

Coding sequence (CDS)

ATGAATCAGTTGACAAAAGAACATGTTGCTCCAGTTAAAATCTCTGACCTCCAGCATGAAATCAAAGTCCTGAAAAAGGAAGTTCATGATAACAAGAAGCAAATATCTTATCTTGAAAATATCATTGAAGCAATTCAAGAACAAATAATTTTAAAAGATAATGTTGAACATGTCGAATCTTCAAATAACGACATCAACATTATTAGTAAGGTCTTTAATAAAAAATGGCTAACCAAGGTCACTTTAAAGTTTAAAGATTACAAATTTGAGGGGACATCCCTAATCGACTCAGGAGCTGATCAAAATGCTATCCAAGAAGGGATAATTCCATCCAAATACTTTGAGATCACTAGGGAAACCCTCAAAGGTGCAAATAACAATGCTTTACAAATAAAGTACAAAATTTTGAAGGTACACATTTACAAAGACGAAGTGTGCTTGAAAAATTCATTTCTCCTCGTCAAAGGCCTTATCGAGAAAGAAGCCCAAATTCCTACAAAGACCAGACCTATTCAAATGAGTAAGGACTTAGTTGACACCTGGTTCAAGGAGATATCAGATCTCTAG

Protein sequence

MNQLTKEHVAPVKISDLQHEIKVLKKEVHDNKKQISYLENIIEAIQEQIILKDNVEHVESSNNDINIISKVFNKKWLTKVTLKFKDYKFEGTSLIDSGADQNAIQEGIIPSKYFEITRETLKGANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGLIEKEAQIPTKTRPIQMSKDLVDTWFKEISDL

Homology

[Close]

BLAST of CsGy1G014890 vs. NCBI nr
Match: GAV78783.1 (hypothetical protein CFOL_v3_22248, partial [Cephalotus follicularis])

HSP 1 Score: 107.5 bits (267), Expect = 5.2e-20
Identity = 62/155 (40.00%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 12  VKISDLQHEIKVLKKEV----HDNKKQISYLENIIEAIQEQIILKD----NVEHVESSNN 71
           + + DLQ EIK  K+E+      +KKQI +LE I+          D     ++  E+S  
Sbjct: 59  ITLQDLQKEIKDTKQELQKFKQKSKKQIIHLEQILLQKHSSSSSSDKEIEQIDQGETSTK 118

Query: 72  DINIISKVFNKKWLTKVTLKFKD-YKFEGTSLIDSGADQNAIQEGIIPSKYFEITRETLK 131
            IN+I +V  +KW   +T+  +D +K +  +LIDSGA  N IQEG+IP+KYFE T++ L 
Sbjct: 119 FINLIERVTYQKWHINITITIQDSFKLQTIALIDSGAQMNCIQEGLIPTKYFEKTKQKLS 178

Query: 132 GANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGL 158
            AN   L++ +K++ VHI    +C+K SF+LVKGL
Sbjct: 179 TANGENLRVNFKVIDVHICNGGICIKQSFILVKGL 213

[Close]

BLAST of CsGy1G014890 vs. NCBI nr
Match: RDY06063.1 (hypothetical protein CR513_10017, partial [Mucuna pruriens])

HSP 1 Score: 103.6 bits (257), Expect = 7.5e-19
Identity = 83/261 (31.80%), Postives = 120/261 (45.98%), Query Frame = 0


Query: 1   MNQLTKEHVAPVKISDLQHEIKVLKKEVHD-NKKQISYLENIIEAIQEQII--------- 60
           MN+ T ++   V I DLQ EIK+LK+E+ +  +  IS    I++   E +I         
Sbjct: 83  MNRFT-DNNQTVTIKDLQEEIKILKQEIQELRENDISLEYRILQLEGEDMINKQKGKEKI 142

Query: 61  ---LKDNVEHVESSNNDINIISKVFNKKWLTKVTLKFKDYKFEGTSLIDSGADQNAIQEG 120
               KD +EH    N  I+I+S +   KW TK+TL     KF   +LIDSGAD N IQEG
Sbjct: 143 NEEEKDKIEH--QGNPYISILSLITTHKWNTKITLILGSEKFTMIALIDSGADINCIQEG 202

Query: 121 IIPSKYFEITRETLKGANNNALQIKYKILKVHIYKDEVCLKNSFLLVKG----------- 180
           +IP+KY+E T E +  AN + + I+YK+    I K+++C   +F+LVK            
Sbjct: 203 LIPTKYYEKTLEGVTSANGSRMHIQYKLPNAKICKNQICFNTAFVLVKNINTPMILGTLI 262

Query: 181 ----------------LIEK----------------------------------EAQIPT 188
                           +I+K                                  E +IPT
Sbjct: 263 KFKRIEEQLKTSKIQEIIKKYENKIIKEICETNPTAFWHRKKYEVSLPYIENFDENKIPT 322

[Close]

BLAST of CsGy1G014890 vs. NCBI nr
Match: GAV87606.1 (zf-CCHC domain-containing protein, partial [Cephalotus follicularis])

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 12  VKISDLQHEIK----VLKKEVHDNKKQISYLENIIEAIQEQIILKD----NVEHVESSNN 71
           + + DLQ EIK             KKQI +LE I+          D     +   E+S  
Sbjct: 323 ITLQDLQKEIKXXXXXXXXXXXXTKKQIIHLEQILLQKHSSSSSYDKEIKQINEGETSTK 382

Query: 72  DINIISKVFNKKWLTKVTLKFKD-YKFEGTSLIDSGADQNAIQEGIIPSKYFEITRETLK 131
            IN+I K+  +KW   +T+K +D +K +  +LIDSGA  N IQEG+IP+KYFE T++ L 
Sbjct: 383 FINLIEKITYQKWHVNITIKIQDSFKLQTIALIDSGAQMNCIQEGLIPTKYFEKTKQKLS 442

Query: 132 GANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGL 158
            AN   L++ +K+  VHI+ + +C+K SF+LVK L
Sbjct: 443 TANGENLRVNFKVTDVHIFNEGICIKQSFILVKDL 477

[Close]

BLAST of CsGy1G014890 vs. NCBI nr
Match: GAV89061.1 (hypothetical protein CFOL_v3_32481 [Cephalotus follicularis])

HSP 1 Score: 101.7 bits (252), Expect = 2.8e-18
Identity = 58/158 (36.71%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 12  VKISDLQHEIKVLKKEV----HDNKKQISYLENII-------EAIQEQIILKDNVEHVES 71
           + + DLQ EIK  K+E+       KK+I +LE ++        +  ++I   + ++  E+
Sbjct: 241 ITLQDLQKEIKDTKQELQKFKQKTKKRIIHLEQVLLQKHSFSSSSDKEI---EQIDQGET 300

Query: 72  SNNDINIISKVFNKKWLTKVTLKFKD-YKFEGTSLIDSGADQNAIQEGIIPSKYFEITRE 131
           S   IN+I ++  +KW   +T+  +D +K +  +LIDSGA  N IQEG+IP+KYFE T++
Sbjct: 301 STKFINLIERITYQKWHVNITITIQDSFKLQTIALIDSGAQMNCIQEGLIPTKYFEKTKQ 360

Query: 132 TLKGANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGL 158
            L  AN   L++ +K+  VHI  + +C+K SF+LVK L
Sbjct: 361 KLSTANGENLRVNFKVTDVHICNEGICIKQSFILVKDL 395

[Close]

BLAST of CsGy1G014890 vs. NCBI nr
Match: GAV78742.1 (RVP domain-containing protein, partial [Cephalotus follicularis])

HSP 1 Score: 101.3 bits (251), Expect = 3.7e-18
Identity = 62/158 (39.24%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 12  VKISDLQHEIKVLKKEV----HDNKKQISYLENII-------EAIQEQIILKDNVEHVES 71
           + + DLQ EIK  K+E+       KKQI +LE I+        +  ++I   D     E+
Sbjct: 1   ITLQDLQKEIKDTKQELQKFKQKTKKQIIHLEQILLQKHSCSSSSDKEIEPIDLESQGET 60

Query: 72  SNNDINIISKVFNKKWLTKVTLKFKD-YKFEGTSLIDSGADQNAIQEGIIPSKYFEITRE 131
           S   IN+I ++  +KW   +T+  +D +K + T LIDSGA  N IQEG+IP+KYFE T +
Sbjct: 61  STKFINLIERIIYQKWHINITITIQDSFKPQTTVLIDSGAQMNCIQEGLIPTKYFEKTEQ 120

Query: 132 TLKGANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGL 158
            L  AN   L++ +KI  VHI  + +C+  SF+LVK L
Sbjct: 121 KLSTANGENLRVNFKITNVHICNEGICINQSFILVKDL 158

[Close]

BLAST of CsGy1G014890 vs. TrEMBL
Match: tr|A0A1Q3CFC2|A0A1Q3CFC2_CEPFO (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22248 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.4e-20
Identity = 62/155 (40.00%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 12  VKISDLQHEIKVLKKEV----HDNKKQISYLENIIEAIQEQIILKD----NVEHVESSNN 71
           + + DLQ EIK  K+E+      +KKQI +LE I+          D     ++  E+S  
Sbjct: 59  ITLQDLQKEIKDTKQELQKFKQKSKKQIIHLEQILLQKHSSSSSSDKEIEQIDQGETSTK 118

Query: 72  DINIISKVFNKKWLTKVTLKFKD-YKFEGTSLIDSGADQNAIQEGIIPSKYFEITRETLK 131
            IN+I +V  +KW   +T+  +D +K +  +LIDSGA  N IQEG+IP+KYFE T++ L 
Sbjct: 119 FINLIERVTYQKWHINITITIQDSFKLQTIALIDSGAQMNCIQEGLIPTKYFEKTKQKLS 178

Query: 132 GANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGL 158
            AN   L++ +K++ VHI    +C+K SF+LVKGL
Sbjct: 179 TANGENLRVNFKVIDVHICNGGICIKQSFILVKGL 213

[Close]

BLAST of CsGy1G014890 vs. TrEMBL
Match: tr|A0A1Q3D520|A0A1Q3D520_CEPFO (Zf-CCHC domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_31032 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 12  VKISDLQHEIK----VLKKEVHDNKKQISYLENIIEAIQEQIILKD----NVEHVESSNN 71
           + + DLQ EIK             KKQI +LE I+          D     +   E+S  
Sbjct: 323 ITLQDLQKEIKXXXXXXXXXXXXTKKQIIHLEQILLQKHSSSSSYDKEIKQINEGETSTK 382

Query: 72  DINIISKVFNKKWLTKVTLKFKD-YKFEGTSLIDSGADQNAIQEGIIPSKYFEITRETLK 131
            IN+I K+  +KW   +T+K +D +K +  +LIDSGA  N IQEG+IP+KYFE T++ L 
Sbjct: 383 FINLIEKITYQKWHVNITIKIQDSFKLQTIALIDSGAQMNCIQEGLIPTKYFEKTKQKLS 442

Query: 132 GANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGL 158
            AN   L++ +K+  VHI+ + +C+K SF+LVK L
Sbjct: 443 TANGENLRVNFKVTDVHIFNEGICIKQSFILVKDL 477

[Close]

BLAST of CsGy1G014890 vs. TrEMBL
Match: tr|A0A1Q3D9E3|A0A1Q3D9E3_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32481 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 58/158 (36.71%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 12  VKISDLQHEIKVLKKEV----HDNKKQISYLENII-------EAIQEQIILKDNVEHVES 71
           + + DLQ EIK  K+E+       KK+I +LE ++        +  ++I   + ++  E+
Sbjct: 241 ITLQDLQKEIKDTKQELQKFKQKTKKRIIHLEQVLLQKHSFSSSSDKEI---EQIDQGET 300

Query: 72  SNNDINIISKVFNKKWLTKVTLKFKD-YKFEGTSLIDSGADQNAIQEGIIPSKYFEITRE 131
           S   IN+I ++  +KW   +T+  +D +K +  +LIDSGA  N IQEG+IP+KYFE T++
Sbjct: 301 STKFINLIERITYQKWHVNITITIQDSFKLQTIALIDSGAQMNCIQEGLIPTKYFEKTKQ 360

Query: 132 TLKGANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGL 158
            L  AN   L++ +K+  VHI  + +C+K SF+LVK L
Sbjct: 361 KLSTANGENLRVNFKVTDVHICNEGICIKQSFILVKDL 395

[Close]

BLAST of CsGy1G014890 vs. TrEMBL
Match: tr|A0A1Q3CF40|A0A1Q3CF40_CEPFO (RVP domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22207 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-18
Identity = 62/158 (39.24%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 12  VKISDLQHEIKVLKKEV----HDNKKQISYLENII-------EAIQEQIILKDNVEHVES 71
           + + DLQ EIK  K+E+       KKQI +LE I+        +  ++I   D     E+
Sbjct: 1   ITLQDLQKEIKDTKQELQKFKQKTKKQIIHLEQILLQKHSCSSSSDKEIEPIDLESQGET 60

Query: 72  SNNDINIISKVFNKKWLTKVTLKFKD-YKFEGTSLIDSGADQNAIQEGIIPSKYFEITRE 131
           S   IN+I ++  +KW   +T+  +D +K + T LIDSGA  N IQEG+IP+KYFE T +
Sbjct: 61  STKFINLIERIIYQKWHINITITIQDSFKPQTTVLIDSGAQMNCIQEGLIPTKYFEKTEQ 120

Query: 132 TLKGANNNALQIKYKILKVHIYKDEVCLKNSFLLVKGL 158
            L  AN   L++ +KI  VHI  + +C+  SF+LVK L
Sbjct: 121 KLSTANGENLRVNFKITNVHICNEGICINQSFILVKDL 158

[Close]

BLAST of CsGy1G014890 vs. TrEMBL
Match: tr|A0A0A0LU92|A0A0A0LU92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385040 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.2e-18
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 77  LTKVTLKFKDYKFEGTSLIDSGADQNAIQEGIIPSKYFEITRETLKGANNNALQIKYKIL 136
           ++K+  K KD++ E  +L DSGADQN IQEG++PSKYFE T+E+L GA  N L I++K+ 
Sbjct: 1   MSKIVFKVKDFQLETLTLFDSGADQNVIQEGLVPSKYFEKTKESLTGAGGNPLNIEFKLS 60

Query: 137 KVHIYKDEVCLKNSFLLVKGLIE 160
           KVHI KD VCL N+F+ VK L E
Sbjct: 61  KVHICKDNVCLVNTFIPVKNLNE 83

The following BLAST results are available for this feature:

BLAST of CsGy1G014890 vs. NCBI nr


Match Name	E-value	Identity	Description
GAV78783.1	5.2e-20	40.00	hypothetical protein CFOL_v3_22248, partial [Cephalotus follicularis]	[more]
RDY06063.1	7.5e-19	31.80	hypothetical protein CR513_10017, partial [Mucuna pruriens]	[more]
GAV87606.1	1.7e-18	38.71	zf-CCHC domain-containing protein, partial [Cephalotus follicularis]	[more]
GAV89061.1	2.8e-18	36.71	hypothetical protein CFOL_v3_32481 [Cephalotus follicularis]	[more]
GAV78742.1	3.7e-18	39.24	RVP domain-containing protein, partial [Cephalotus follicularis]	[more]

BLAST of CsGy1G014890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G014890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G014890 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1Q3CFC2\|A0A1Q3CFC2_CEPFO	3.4e-20	40.00	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]
tr\|A0A1Q3D520\|A0A1Q3D520_CEPFO	1.1e-18	38.71	Zf-CCHC domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 ...	[more]
tr\|A0A1Q3D9E3\|A0A1Q3D9E3_CEPFO	1.9e-18	36.71	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32481 PE=4...	[more]
tr\|A0A1Q3CF40\|A0A1Q3CF40_CEPFO	2.5e-18	39.24	RVP domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=C...	[more]
tr\|A0A0A0LU92\|A0A0A0LU92_CUCSA	3.2e-18	56.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G385040 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G014890.1	CsGy1G014890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G014890	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G014890	Watermelon (97103) v2	cgybwmbB009
CsGy1G014890	Cucurbita maxima (Rimu)	cgybcmaB078
CsGy1G014890	Cucurbita maxima (Rimu)	cgybcmaB095
CsGy1G014890	Cucurbita moschata (Rifu)	cgybcmoB072
CsGy1G014890	Cucurbita pepo (Zucchini)	cgybcpeB007
CsGy1G014890	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G014890	Bottle gourd (USVL1VR-Ls)	cgyblsiB014
CsGy1G014890	Bottle gourd (USVL1VR-Ls)	cgyblsiB029
CsGy1G014890	Melon (DHL92) v3.5.1	cgybmeB016
CsGy1G014890	Melon (DHL92) v3.5.1	cgybmeB028
CsGy1G014890	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G014890	Watermelon (Charleston Gray)	cgybwcgB021
CsGy1G014890	Watermelon (97103) v1	cgybwmB043
CsGy1G014890	Watermelon (97103) v1	cgybwmB060
CsGy1G014890	Watermelon (97103) v1	cgybwmB061
CsGy1G014890	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G014890	Silver-seed gourd	carcgybB0000