CsGy1G013880 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G013880
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr1 : 9532437 .. 9533643 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGGGAAGCAGGCTGGAAGGAAGGTTGGCTTCAGATGGAGCTTCGACAAACGGTGAATGGAGGAATGTCGGCTTGACAGAGAGAACTCCAACGTTCAACTTGAAATAAGACTAGGCTCAAACTCCACGACAGGCTTTGTGTGGATAGCGACTGGGCTTCAAACGTGACAGGGAGAGACGTTATGGCAAACGAACAACGTGTGCCATGGAGACCAGTGTCGACGGTGATCTGGTACGTGACAATGACCAGAGATGGTAGACGACATATAGAGTTACAACAATGCATAATGGACTATATGGTCGAGTTTGTTATTATTTTGCTTATTATTTATTAATGCTGTTAGCTTTATAATAATATTTATTTTTTGTTGCAGGTTAGATACTAATGGACTGTAGTAATGACGATCACTTCTTAGTTGGAGGCGATCATGAAGGCCAGTTTGATAGTATTTTAGGGATAGTACCTAGTCAAAGATATGTGTGTGGACCTACCATGATAGTTCATTTGACATAAAGCTTTAATGTGAATCCATTGGCTGTTGAGTACAACGAACGTGGTGAATGGATTGGTGCAAATGATACTCAAATGGTGAGTTATATTGGAACATGCGTTCGACACAACATTTCGATTACATATGCTTCATGGTTAGACGTACCATCAGAATTAAAAGATAAAATTTATGTTTGCATTCAAGTAGACATAATTCTTTCATTCTTAAATATAATACAATGAGATATGACGAGAATGTTTATATATGCTATTTGGTCATTTTTAGAAATCATTTGTAACAAATCCAAAATCCAAGAAAGATATTATGAAAAAAGTTGGGAGTGCATTTCAAAATTACAAGAGTATTTTGAGAAATAATTATACTTTTTCATTTGTAGATGCACTAAAATGTTTAAAATTTCCACCACCAAACTATCCTATTATTATGCTTAATTCAATTTTTGATATGGTTAAGCTTGTGAATGTAATTTTTTAGGAGAGACCATGTAGTCTTGCTATTGGAAAGGTTGATAACATTGTTGTGGTAGGAACTATTTTCAATAGAATAGGAGCAGATGAAGTAGTCTATAGAGTACGACTTGGAGTGGGTGATCTGCAGATTCTCATTGAACTTTCAAGTGACATCCATTCTTCGCTGCCCATACCGAGTGTTGGAAGCATTTATTATGTATACGTTGCAATTGATTCATAG

mRNA sequence

ATGGCTAAGGGAAGCAGGCTGGAAGGAAGGTTGGCTTCAGATGGAGCTTCGACAAACGGTGAATGGAGGAATGTCGGCTTGACAGAGAGAACTCCAACGCTCAAACTCCACGACAGGCTTTGTGTGGATAGCGACTGGGCTTCAAACGTGACAGGGAGAGACGTTATGGCAAACGAACAACGTGTGCCATGGAGACCAGTGTCGACGGTGATCTGGTACGTGACAATGACCAGAGATGGTAGACGACATATAGAGTTACAACAATGCATAATGGACTATATGGTCGAGTTTATACTAATGGACTGTAGTAATGACGATCACTTCTTAGTTGGAGGCGATCATGAAGGCCAGTTTGATAGTATTTTAGGGATAGTACCTAGTCAAAGATATGAGAGACCATGTAGTCTTGCTATTGGAAAGGTTGATAACATTGTTGTGGTAGGAACTATTTTCAATAGAATAGGAGCAGATGAAGTAGTCTATAGAGTACGACTTGGAGTGGGTGATCTGCAGATTCTCATTGAACTTTCAAGTGACATCCATTCTTCGCTGCCCATACCGAGTGTTGGAAGCATTTATTATGTATACGTTGCAATTGATTCATAG

Coding sequence (CDS)

ATGGCTAAGGGAAGCAGGCTGGAAGGAAGGTTGGCTTCAGATGGAGCTTCGACAAACGGTGAATGGAGGAATGTCGGCTTGACAGAGAGAACTCCAACGCTCAAACTCCACGACAGGCTTTGTGTGGATAGCGACTGGGCTTCAAACGTGACAGGGAGAGACGTTATGGCAAACGAACAACGTGTGCCATGGAGACCAGTGTCGACGGTGATCTGGTACGTGACAATGACCAGAGATGGTAGACGACATATAGAGTTACAACAATGCATAATGGACTATATGGTCGAGTTTATACTAATGGACTGTAGTAATGACGATCACTTCTTAGTTGGAGGCGATCATGAAGGCCAGTTTGATAGTATTTTAGGGATAGTACCTAGTCAAAGATATGAGAGACCATGTAGTCTTGCTATTGGAAAGGTTGATAACATTGTTGTGGTAGGAACTATTTTCAATAGAATAGGAGCAGATGAAGTAGTCTATAGAGTACGACTTGGAGTGGGTGATCTGCAGATTCTCATTGAACTTTCAAGTGACATCCATTCTTCGCTGCCCATACCGAGTGTTGGAAGCATTTATTATGTATACGTTGCAATTGATTCATAG

Protein sequence

MAKGSRLEGRLASDGASTNGEWRNVGLTERTPTLKLHDRLCVDSDWASNVTGRDVMANEQRVPWRPVSTVIWYVTMTRDGRRHIELQQCIMDYMVEFILMDCSNDDHFLVGGDHEGQFDSILGIVPSQRYERPCSLAIGKVDNIVVVGTIFNRIGADEVVYRVRLGVGDLQILIELSSDIHSSLPIPSVGSIYYVYVAIDS
Homology
[Close]
BLAST of CsGy1G013880 vs. NCBI nr
Match: XP_022136079.1 (uncharacterized protein LOC111007859 isoform X3 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 124 IVPSQRYE-RPCSLAIGKVDNIVVVGTIFNRIGADEVVYRVRLGVGDLQILIELSSDIHS 183
           +   Q+ E +PC LA+  VDNIV VGTIF+       V+ V LGV ++++++++  D ++
Sbjct: 317 VTDEQKMEGKPCHLAVESVDNIVAVGTIFDNNVQCPTVHGVPLGVDNVRVMVDIVIDEYA 376

Query: 184 SLPIPSVGSI 193
           ++PIP  G I
Sbjct: 377 TIPIPVRGEI 386

[Close]
BLAST of CsGy1G013880 vs. NCBI nr
Match: XP_022136080.1 (uncharacterized protein LOC111007859 isoform X4 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 124 IVPSQRYE-RPCSLAIGKVDNIVVVGTIFNRIGADEVVYRVRLGVGDLQILIELSSDIHS 183
           +   Q+ E +PC LA+  VDNIV VGTIF+       V+ V LGV ++++++++  D ++
Sbjct: 317 VTDEQKMEGKPCHLAVESVDNIVAVGTIFDNNVQCPTVHGVPLGVDNVRVMVDIVIDEYA 376

Query: 184 SLPIPSVGSI 193
           ++PIP  G I
Sbjct: 377 TIPIPVRGEI 386

[Close]
BLAST of CsGy1G013880 vs. NCBI nr
Match: XP_022136077.1 (uncharacterized protein LOC111007859 isoform X2 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 124 IVPSQRYE-RPCSLAIGKVDNIVVVGTIFNRIGADEVVYRVRLGVGDLQILIELSSDIHS 183
           +   Q+ E +PC LA+  VDNIV VGTIF+       V+ V LGV ++++++++  D ++
Sbjct: 316 VTDEQKMEGKPCHLAVESVDNIVAVGTIFDNNVQCPTVHGVPLGVDNVRVMVDIVIDEYA 375

Query: 184 SLPIPSVGSI 193
           ++PIP  G I
Sbjct: 376 TIPIPVRGEI 385

[Close]
BLAST of CsGy1G013880 vs. NCBI nr
Match: XP_022136076.1 (uncharacterized protein LOC111007859 isoform X1 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 124 IVPSQRYE-RPCSLAIGKVDNIVVVGTIFNRIGADEVVYRVRLGVGDLQILIELSSDIHS 183
           +   Q+ E +PC LA+  VDNIV VGTIF+       V+ V LGV ++++++++  D ++
Sbjct: 317 VTDEQKMEGKPCHLAVESVDNIVAVGTIFDNNVQCPTVHGVPLGVDNVRVMVDIVIDEYA 376

Query: 184 SLPIPSVGSI 193
           ++PIP  G I
Sbjct: 377 TIPIPVRGEI 386

The following BLAST results are available for this feature:
BLAST of CsGy1G013880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136079.13.3e-0438.57uncharacterized protein LOC111007859 isoform X3 [Momordica charantia][more]
XP_022136080.13.3e-0438.57uncharacterized protein LOC111007859 isoform X4 [Momordica charantia][more]
XP_022136077.13.3e-0438.57uncharacterized protein LOC111007859 isoform X2 [Momordica charantia][more]
XP_022136076.13.3e-0438.57uncharacterized protein LOC111007859 isoform X1 [Momordica charantia][more]
BLAST of CsGy1G013880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G013880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G013880 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G013880.1CsGy1G013880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G013880Cucumber (Chinese Long) v3cgybcucB002
CsGy1G013880Watermelon (97103) v2cgybwmbB003
CsGy1G013880Wax gourdcgybwgoB046
CsGy1G013880Cucurbita maxima (Rimu)cgybcmaB058
CsGy1G013880Cucurbita maxima (Rimu)cgybcmaB061
CsGy1G013880Cucurbita moschata (Rifu)cgybcmoB054
CsGy1G013880Cucurbita moschata (Rifu)cgybcmoB057
CsGy1G013880Cucurbita pepo (Zucchini)cgybcpeB082
CsGy1G013880Cucurbita pepo (Zucchini)cgybcpeB142
CsGy1G013880Cucumber (Chinese Long) v2cgybcuB001
CsGy1G013880Bottle gourd (USVL1VR-Ls)cgyblsiB041
CsGy1G013880Melon (DHL92) v3.5.1cgybmeB010
CsGy1G013880Melon (DHL92) v3.6.1cgybmedB009
CsGy1G013880Watermelon (Charleston Gray)cgybwcgB014
CsGy1G013880Watermelon (97103) v1cgybwmB054
CsGy1G013880Wild cucumber (PI 183967)cgybcpiB001
CsGy1G013880Silver-seed gourdcarcgybB0180
CsGy1G013880Silver-seed gourdcarcgybB0342