CsGy1G012960 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012960
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	LOB domain-containing protein 1-like
Location	Chr1 : 8400940 .. 8402087 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAATAAGGAGGCAGAGTGTATAAGTCTACAAAAATGAACTTAAAAGTCCAATTTTAATTTTTATTTCAACTTACGACGTCATCTCTTCTTCTTCACTTCGTCTCGTCTCGTCTCTCTCTATATATTATATTCTTCGTTCTTCTTCACAGCCAAAACCAACTCCATCTCTCTCTCTCTCTACTGACTCTAAAATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGTACTTCCTTGATCCCTAATTTTCTGTTTCTCTCTTTCAAATTTCGCTGTCTTTTCTTCTTGTTTCTATGTTTGAAAATTATGAATTCCGTTATTGAAATTGAAAATTGACCTTAACAACTTAACGAAAAACCATCGTTCTGGCTGGAATGAAGTTTGACGAATTCACAATCCTATTATGTTTGATTGCTTTTGCTTGATGATAATTTGGAGCTATTACGTTCATACATCATGAAAATTGGTAGAATCAAATGAAAACACCCAACTGTTCGATTAATGCCCTCGAACAATCCATCATATTGAATGTTTTATTGAATTCTTCAGGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

mRNA sequence

ATGAAATTAATAAGGAGGCAGATGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Coding sequence (CDS)

ATGAAATTAATAAGGAGGCAGATGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Protein sequence

MKLIRRQMSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT

Homology

[Close]

BLAST of CsGy1G012960 vs. NCBI nr
Match: XP_004147299.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 9.1e-47
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK
Sbjct: 97  VSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 156

Query: 68  ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 120
           ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 157 ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 208

[Close]

BLAST of CsGy1G012960 vs. NCBI nr
Match: KGN64755.1 (hypothetical protein Csa_1G088450 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 9.1e-47
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK
Sbjct: 54  VSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 113

Query: 68  ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 120
           ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 114 ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of CsGy1G012960 vs. NCBI nr
Match: XP_008463550.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK
Sbjct: 94  VSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 153

Query: 68  ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 120
           ELAQTPPPMSS SLLP+HRSLDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 154 ELAQTPPPMSSLSLLPDHRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of CsGy1G012960 vs. NCBI nr
Match: XP_022157927.1 (LOB domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 153.3 bits (386), Expect = 5.2e-34
Identity = 89/112 (79.46%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SSLVYEASARIRDPVYGCAGAICQLQKQIN XXXXXXXXXXXX   HCHQ +LVALICK
Sbjct: 95  VSSLVYEASARIRDPVYGCAGAICQLQKQINEXXXXXXXXXXXXVNMHCHQASLVALICK 154

Query: 68  ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 120
           ELAQTPPP+      P+HRSLDN+FNI ATPQSYQ YT    DSNIW+PLWT
Sbjct: 155 ELAQTPPPVPP----PDHRSLDNNFNI-ATPQSYQNYTPFLEDSNIWEPLWT 201

[Close]

BLAST of CsGy1G012960 vs. NCBI nr
Match: XP_022949099.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 4.0e-26
Identity = 69/112 (61.61%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SSLVYEASARIRDPVYGCAGAIC LQKQIN                 CHQ NLVALICK
Sbjct: 93  VSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICK 152

Query: 68  ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 120
           EL QTP P       P+H SLDN+F+  ATPQSY     LF DSNIW+ LWT
Sbjct: 153 ELTQTPAPTPPP---PDHCSLDNNFS-TATPQSY----PLFDDSNIWEALWT 196

[Close]

BLAST of CsGy1G012960 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQIN 39
           +SS+VYEA+AR+RDPVYGC GAI  LQ+QI+
Sbjct: 70  VSSMVYEANARVRDPVYGCVGAISSLQQQID 100

[Close]

BLAST of CsGy1G012960 vs. TAIR10
Match: AT2G28500.1 (LOB domain-containing protein 11)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQI 38
           ++S+VYEA AR+RDPVYGCAGAI  LQ+Q+
Sbjct: 112 VNSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

[Close]

BLAST of CsGy1G012960 vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-06
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 8  MSSLVYEASARIRDPVYGCAGAICQLQKQIN 39
          ++SL YEA AR+RDPVYGC GAI  LQ+Q++
Sbjct: 68 VNSLAYEAEARVRDPVYGCVGAISYLQRQVH 98

[Close]

BLAST of CsGy1G012960 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 20/31 (64.52%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 8  MSSLVYEASARIRDPVYGCAGAICQLQKQIN 39
          ++SLV+EA+AR+RDPVYGC GAI  LQ Q++
Sbjct: 65 VNSLVFEANARVRDPVYGCVGAISYLQNQVS 95

[Close]

BLAST of CsGy1G012960 vs. TAIR10
Match: AT1G07900.1 (LOB domain-containing protein 1)

HSP 1 Score: 48.1 bits (113), Expect = 4.3e-06
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQK 36
           ++S+VYEA ARIRDPVYGCAGAI  LQ+
Sbjct: 90  VNSMVYEAEARIRDPVYGCAGAIYHLQR 117

[Close]

BLAST of CsGy1G012960 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.0e-06
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQIN 39
           +SS+VYEA+AR+RDPVYGC GAI  LQ+QI+
Sbjct: 70  VSSMVYEANARVRDPVYGCVGAISSLQQQID 100

[Close]

BLAST of CsGy1G012960 vs. Swiss-Prot
Match: sp|Q9SK08|LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-05
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQI 38
           ++S+VYEA AR+RDPVYGCAGAI  LQ+Q+
Sbjct: 112 VNSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

[Close]

BLAST of CsGy1G012960 vs. Swiss-Prot
Match: sp|Q9FML4|LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.5e-05
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 8  MSSLVYEASARIRDPVYGCAGAICQLQKQIN 39
          ++SL YEA AR+RDPVYGC GAI  LQ+Q++
Sbjct: 68 VNSLAYEAEARVRDPVYGCVGAISYLQRQVH 98

[Close]

BLAST of CsGy1G012960 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 5.9e-05
Identity = 20/31 (64.52%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 8  MSSLVYEASARIRDPVYGCAGAICQLQKQIN 39
          ++SLV+EA+AR+RDPVYGC GAI  LQ Q++
Sbjct: 65 VNSLVFEANARVRDPVYGCVGAISYLQNQVS 95

[Close]

BLAST of CsGy1G012960 vs. Swiss-Prot
Match: sp|Q9LQR0|LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.7e-05
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQK 36
           ++S+VYEA ARIRDPVYGCAGAI  LQ+
Sbjct: 90  VNSMVYEAEARIRDPVYGCAGAIYHLQR 117

[Close]

BLAST of CsGy1G012960 vs. TrEMBL
Match: tr|A0A0A0LS55|A0A0A0LS55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.0e-47
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK
Sbjct: 54  VSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 113

Query: 68  ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 120
           ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 114 ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of CsGy1G012960 vs. TrEMBL
Match: tr|A0A1S3CK12|A0A1S3CK12_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK
Sbjct: 94  VSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 153

Query: 68  ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 120
           ELAQTPPPMSS SLLP+HRSLDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 154 ELAQTPPPMSSLSLLPDHRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of CsGy1G012960 vs. TrEMBL
Match: tr|A0A0A0LUS4|A0A0A0LUS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           ++S+VYEASARIRDP+YGCAG+I  LQ+QIN                HC Q NL+ LI K
Sbjct: 78  VNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWK 137

Query: 68  ELAQTP-PPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 120
           EL Q P PPM       +H+SL++ +NI A+PQSY  Y+ LF + N+ +P+WT
Sbjct: 138 ELGQVPQPPMH------DHQSLNDPYNI-ASPQSYHSYSYLFEECNVLEPMWT 183

[Close]

BLAST of CsGy1G012960 vs. TrEMBL
Match: tr|A0A2I4EHE8|A0A2I4EHE8_9ROSI (LOB domain-containing protein 1-like OS=Juglans regia OX=51240 GN=LOC108989605 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-19
Identity = 60/121 (49.59%), Postives = 73/121 (60.33%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SS+VYEASARIRDPVYGCAGAICQLQK +N                HC QTNLVALIC 
Sbjct: 95  VSSMVYEASARIRDPVYGCAGAICQLQKHVNELQAQLAKAQAELVNMHCQQTNLVALICM 154

Query: 68  ELAQTPPPM--SSSSLLPEHRSLDNSFNIVATPQSYQGYTS-----LFGDS--NIWDP-L 119
           E++Q   P+     +  P  +SLDN  NI  TP SYQ  +S     L  +S  ++W+P L
Sbjct: 155 EMSQGSAPVLHDHQAASPHQQSLDNFININTTPHSYQMISSNQCFQLDDNSLGSMWEPAL 214

[Close]

BLAST of CsGy1G012960 vs. TrEMBL
Match: tr|A0A1Q3B2A5|A0A1Q3B2A5_CEPFO (DUF260 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05614 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.0e-19
Identity = 69/115 (60.00%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 8   MSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICK 67
           +SS+VYEASARIRDPVYGCAGAICQLQKQ+N XXXXXXXXXXXXXXX   QTNLVAL+C 
Sbjct: 103 VSSMVYEASARIRDPVYGCAGAICQLQKQVNEXXXXXXXXXXXXXXXXXQQTNLVALLCM 162

Query: 68  ELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSN---IWDPLWT 120
           E+AQ+P P+   S+           NI+  P SY        D+N   +W+PLWT
Sbjct: 163 EMAQSPQPIYQQSV----------DNIITNPPSYHSTPCFIDDNNMGSLWEPLWT 207

The following BLAST results are available for this feature:

BLAST of CsGy1G012960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147299.1	9.1e-47	99.11	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
KGN64755.1	9.1e-47	99.11	hypothetical protein Csa_1G088450 [Cucumis sativus]	[more]
XP_008463550.1	1.8e-42	94.64	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
XP_022157927.1	5.2e-34	79.46	LOB domain-containing protein 11-like [Momordica charantia]	[more]
XP_022949099.1	4.0e-26	61.61	LOB domain-containing protein 1-like [Cucurbita moschata]	[more]

BLAST of CsGy1G012960 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31320.1	3.9e-07	70.97	LOB domain-containing protein 4	[more]
AT2G28500.1	1.1e-06	70.00	LOB domain-containing protein 11	[more]
AT5G63090.2	2.5e-06	64.52	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G30130.1	3.3e-06	64.52	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G07900.1	4.3e-06	75.00	LOB domain-containing protein 1	[more]

BLAST of CsGy1G012960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SHE9\|LBD4_ARATH	7.0e-06	70.97	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|Q9SK08\|LBD11_ARATH	2.0e-05	70.00	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
sp\|Q9FML4\|LOB_ARATH	4.5e-05	64.52	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
sp\|Q8LBW3\|LBD12_ARATH	5.9e-05	64.52	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9LQR0\|LBD1_ARATH	7.7e-05	75.00	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]

BLAST of CsGy1G012960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS55\|A0A0A0LS55_CUCSA	6.0e-47	99.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=4 SV=1	[more]
tr\|A0A1S3CK12\|A0A1S3CK12_CUCME	1.2e-42	94.64	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=...	[more]
tr\|A0A0A0LUS4\|A0A0A0LUS4_CUCSA	3.7e-20	48.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=4 SV=1	[more]
tr\|A0A2I4EHE8\|A0A2I4EHE8_9ROSI	4.1e-19	49.59	LOB domain-containing protein 1-like OS=Juglans regia OX=51240 GN=LOC108989605 P...	[more]
tr\|A0A1Q3B2A5\|A0A1Q3B2A5_CEPFO	7.0e-19	60.00	DUF260 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012960.1	CsGy1G012960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..57
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 8..119
None	No IPR available	PANTHER	PTHR31301:SF6	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 8..119
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 6..48 e-value: 7.7E-13 score: 48.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..51 score: 9.514

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012960	MELO3C005009	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G012960	CmoCh01G005640	Cucurbita moschata (Rifu)	cgybcmoB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G012960	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012960	Cucumber (Chinese Long) v3	cgybcucB050
CsGy1G012960	Watermelon (97103) v2	cgybwmbB030
CsGy1G012960	Watermelon (97103) v2	cgybwmbB034
CsGy1G012960	Wax gourd	cgybwgoB017
CsGy1G012960	Wax gourd	cgybwgoB046
CsGy1G012960	Cucumber (Gy14) v2	cgybcgybB040
CsGy1G012960	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G012960	Cucurbita maxima (Rimu)	cgybcmaB110
CsGy1G012960	Cucurbita maxima (Rimu)	cgybcmaB124
CsGy1G012960	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G012960	Cucurbita moschata (Rifu)	cgybcmoB114
CsGy1G012960	Cucurbita pepo (Zucchini)	cgybcpeB036
CsGy1G012960	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G012960	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012960	Cucumber (Chinese Long) v2	cgybcuB046
CsGy1G012960	Bottle gourd (USVL1VR-Ls)	cgyblsiB003
CsGy1G012960	Bottle gourd (USVL1VR-Ls)	cgyblsiB020
CsGy1G012960	Melon (DHL92) v3.5.1	cgybmeB009
CsGy1G012960	Melon (DHL92) v3.6.1	cgybmedB008
CsGy1G012960	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G012960	Watermelon (Charleston Gray)	cgybwcgB032
CsGy1G012960	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G012960	Watermelon (97103) v1	cgybwmB012
CsGy1G012960	Watermelon (97103) v1	cgybwmB072
CsGy1G012960	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012960	Wild cucumber (PI 183967)	cgybcpiB043
CsGy1G012960	Silver-seed gourd	carcgybB0449