CsGy1G012940 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G012940
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 8376936 .. 8381970 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTTGTGCATGTTTCAGCAGAAGAGTCGTGATGATGAAGATCTTCTCCAGCATGTGACATGCTAGAATCAGATACATCAGTATCCATCAAAGTCCCAATCTTCGCCAATGGAGAGAGTGCTCTTTTGACTATTCTCTGAAGGTAGTCTTTCTTCACTGGGCCCTCACATGAGACTACCGACACTAGAGGAGTTCCAAAAGGTCTCCATCCTGACATTATGTCCGCATCACTAGTAACCCTGGCACAAAAGGTATATATTGCACATTTAAAATTGTTCCCTCCTTTAAGTAGTAGTAATTCATGAGCTACATTAACATTGTAATTTCTAATAACCAATACTACCCCCAACCAAATTTTGGACAAAAGATACTTTAATCATTTAGGAGCGGAAAAAAAACTCTAATCAGAATGAACGTCAAAACCTGATAGAAAAAGTATATATTATAAAAGATAAACAATGCTTAAATAGCTTCACATGCATGAATGCGTTATCAAATTGCACATACTGTTCTTGGCTTCGATGAACTAATTGAAGATATTTAGCATTCTTTGTCAACTTTGGAATTTTGTAGGCAGCAATATGGTCATCATCTTTTATCGTGGACAATGATATCAGTGGATCTTCCAGAAACCTGTGAACCAAATGGTCTCGCACCTACATAGGAGACATTTCCAAACAAAAATAAGTAAAAAAACTGCAAACCTGCCAATATTCACCTGTACTAATGCACTTCTATACATAATTTAACTCATAAATCTCCTGGGAACTAAAGATGATGGGAAACAATTTTTTGTCACTCTTTCCAAGTACACATCAGAGAAGTTCCATTGAGAAGAACTACAGAGCTGAAGCAGCTAAGACACAAATTCCGAACATGAACATGTAAGGGCTGTATAACAGCGAAAACAAAATTAAGAATCAGCAGTAATCAAAGTCTATGCAAATCATTATTGAAGCCTGCTTCACAAAAACATTGCCATCCTCATGCTTGCAAAGGAAATAGAATAAGTTCTATATTTATATGAGCACATAACAAATTTATGCATAAAGTTAAGTGCTACAAACCTCCGCCAAAAGGAGCTTCTCACTATGCCTCAATGAACAAGTGCCGTTAAGTGCCTGTATTAGATCCCTACACCGGCCCTGCTTTGGTACAGTGACAGTTAAAGTTGATGGACGCTTACTTCCATCACTAGTAAAAACAGTCACTGTCATAGTGCGGGTGGTGGTTGACTGGAGTGGCAACGAGAGATACATGAAGGGATCAAAAGTGACAGAAACTTTATTGCACACGGGACAGACTAAAGTTGATTTGTATTGGCCCTGTAAAGTGAGGGATAATCAAATTTAATAACCTCTAAAGCTGTCTTGAAATAAAGGTACGGCAAGCAGAAAATATGCAAGGGAATGAGATGAGCAGAATAACCCAAGAAAAATATTTCTGATATCAATTATCATAAAATAAAATTGCAGAGACTAAGAGGAAGCTAGACATACTGATGTAGAAGGGATGGCTCCAGCCTTGTCCTATTTACTAAAAGTCACAATTTTTTGAATTGAAAACTTCTCATTGATATAATAGAAATGAATAAATGTTCAAGAAAAACAACACCAAAATAAAGTGAACAGTTAAATTAACTACTGACACAAGCAGCCAAAGGGAGGCTTTGAATTTGAAACTCGACCAAAACTCTTCCACAAGACCTTAGGAATTGGTATTAACATTAGAAAAATTTTGGCTTTTCTTACTAGATAGATTTAGATTCAAAACTAAAACCGAACATGGCAAAGGGTGCTTGCCATAATGGCAATAATTGGAGAGTAAGTAGGTCAGTGAATAACAGAAATTCAAGTGCTAAAAGCCCGGGTTTTCACTCGGAAGTTGTAGTCCCATGCTTCGTCAAGAACTTATTCCCTAGTGGGCAACAGGCTGAATAGGAAGCTAAGAACCTGTGAGACCTCCAATTATCCACACATATGTTAGGAAGGGCAAAAAGGGGAATTCATCAGCTAATAACAAGAAAGAATGATTGAGGGAAGGATATCGTGCAGAGTGGGTCCCGCTGGGAAGAATTTTAGGAGGGCTATAAATAGTGATTGTTTGTGAGAGGGTAGGTAGGTTTTATTTTGTCATCTTTATGATGAGTAGGCTGCTGTAGCCGCAAAAGGGAAGTATCCTTCTTGTAAAAGGAGCTGGTATGTTTTCTGGTTATTTCCTTTCTTTGTTATATTTTATATCGTTGATTGTAATATTTTGGCTTATATATAAATAAAGAGTAACAGAGTATTGCCTCTGTTTAGCCATTGTTGGGTGTTTTATTTGATATTTTGGTCGAAAGCCTGACACAACCATAGCTATGCATACAAGACATGGATACAACACAACACAAACACGGCAAAGATTTTTTTTTTAAATCTAGGTTAGAGTGTAAAATAGCCTCCTTTCTCATGCCAAAGATGTCTAAGCTCAAGCTCCCAAGTGATATAGGACCGTTACTCATTGATAAGCTTCAAAGTAGACTACCATACAAATGATACTGTATCTGTTTGAAGTGTTTGTTTGCTAGATAGCTTTCAAGCAGGTTGGTGGATATTTTCAAGGGCCTAATTTTCTTGACTTCAAACATTATATGTATTTCTGTCGTTATGTTTTCACTTTTCAGCCTTGTTTTTGTCTACCGTAGGTAGCTTCTGTTGTTATTTTGGTTGTTACTTTGGTCTTTTCATGACCTTAGTATTGTTCTTGTACTTTGGTCTTTTCTTTGTATTTTGGATATGATGAGGGTGCTATAGGGGTGTCAACTTAGTTGAGATGTCCGGGTGCACCTACTGATCCTATCCCTCTCTCTCCCCCCATTTCTTGGCTTCCCTATTATTCTCATTGTATAGATCTCTCGTACATTGAGTTTATTAATAATAAAGAAGCTTGTCTCCTTTTAAAAAAAAAAACATTAATAGTGTGTTGCTAATCAGATCTTAAGGAAACGCTTCTGAAAGGGAGAAGTTCAATTTTGTGATTGTTACAACTTTGCTTTGGCAGGTGTTGTTAGAGAGGAACAGGAGATTAATTTTTGAAATTGAGAATTGGGGGGGTCAATTGGGATAGTATAGAGTTTTAGACCCTCCATAGACTATTCATTCTAAAGGTTTTTGCCACTAAGACCTTTTCATTCCACCAATTGAAAGATCCTTATTGTAACACTTGAGCTTCTAGGGTTACACTGGTATACTTGATTGTCGATTATTTTTTCATTTCCTATTTAAGGGCATTGCTATTATGAAACCTAACAGTAAATTTGAAGGAAGATTTTTTATTTGTCAAACCTACAAAGGTGCAAAATCCAACCCACGTAGCATCCAAAATTTTTTGTACAGAATTTTTTCTTTTTTAAAAAAAACGGAGACAAGTAGCTTATATTCAAAGTCAAGTCATCACGAGGGGAAGAAAAACACCATATGGAAATTCTTGTGGTGCTTTGGTTTAGTTTATTTGGTCGGAGAGGAGTAAGAGTTTTTTTATTGTTCAAATGAGGATTTTGTAGAAACCAAAACAACATATGATTTCCAGCATTAGAAAGAGCCGGAGAGGCATATAATAATTCTTCTTTAACTCATACAGACTAGGAATTCCTTTTTATTTCATACTAACTTGAGAAAATCTGTTAAATCCCAAGGGAATAGTTGTCCAGCTTCTCAAACAAATCCTCAGGGACATAATTGTACAACCCCAACAGATCCTACACAAGTAAGGTTGTCAACCAAAGAATGTTCCTATTTGAGAAAACTTCCAAATATTAACTCCTTTTGTTTCTCAACCAGTACTGATCTACAAACTAGAGAATATTCCTTAGATCTCAAAGAAATAGTTGACAAATGACAACCCATACAACTGTTCCTCAAGGACATAGTTGTACAACTACAACCTACACAATGGATCTTTTACTTGGTAGAGTCGTTAACTAGAGAATATTCCTATTTGAGAAAACTTCCATTTTTCTTTTATTTTTATTTTTTTTGCAATCAGTACTGATCTCCAATTGGAGGATACTAAATCTTCCTCTTGTACATCTTTTGTAATTAACACATTGTATCTTCCTGAGGATTCCACATTGGAAAAACTAAGAGCCTTCAGAGTGTTTATATGAACTACCCTTCTCGATATCAATTACTAAGAAGGAACCCATGTTATTTAACATTTCTTAAAAGAAAAGGTAAATTTAATGCGTGTGTGATTTATAAAAAAATATATTGCAGTTGAAATAAGTAATTTTACACACTTGGCACACATCGACAATAATGGAATCATTACGAGCAATGTGGTTCGCCCAGTATTCATCAGCAACTTCTTCATCAGGTCTTCCATCTGCATCTCTGGACTTAATATAGGGTTTGTGCTTTACGCGATTCAGATCTTCATGTAAACCATCAAGCAGAAATGCTAGAAGTTCCTGCAATCAAACTTTTTGATTTCTTGATCCAATAAAATGATTTGTGAAAATAGTAAAATTACGTGAGTAATAAACCTGGGAATCATGCTGATTATATCCACTAAATTGGGGTGCAAAACGAGCAAGCTTTGCTTTAAATGGACGGGGAGCAACAGACGTTCGTCCAGGAGCCCATAGCTTTCTAAGCAAGTCACCAAATGCCATGGCAAGCTCACCCTGTGTATACAACTTCAAGTTAGCAGAGTAAACTATAACAGACACCATACAAATATCAGTAAATGGCTGCTTCAAAATTTCGAACATATAACTTCAAAAGCAATCAACATAAGAATCAGAATGCAGATACTCTTGTACCAAAAAGAACACTGATCTTTAGAAAATAAATTGCCATGAAACCTGTGTTATATTACATCCATGTCCTGAACCAATTCATGCACAAGCCAAAATCAAAAAACGCATTTTCACTCTTTTTTTATTTTTCTAGACTATGTAGGAGGTTCTGCATCTCCTGATGTCCTTATCCAAAGTGCTTCTACAAGGAACCGTTGTTGCTTTTCCATTTCTCGTGAGGGAACTCTATAA

mRNA sequence

ATGAACTTGTGCATGTTTCAGCAGAAGAGTCGTGATGATGAAGATCTTCTCCAGCATTCTTTCTTCACTGGGCCCTCACATGAGACTACCGACACTAGAGGAGTTCCAAAAGGTCTCCATCCTGACATTATGTCCGCATCACTAGTAACCCTGGCACAAAAGGCAGCAATATGGTCATCATCTTTTATCGTGGACAATGATATCAGTGGATCTTCCAGAAACCTTACACATCAGAGAAGTTCCATTGAGAAGAACTACAGAGCTGAAGCAGCTAAGACACAAATTCCGAACATGAACATATCCCTACACCGGCCCTGCTTTGGTACAGTGACAGTTAAAGTTGATGGACGCTTACTTCCATCACTAGTAAAAACAGTCACTGTCATAGTGCGGGTGGTGGTTGACTGGAGTGGCAACGAGAGATACATGAAGGGATCAAAAGTGACAGAAACTTTATTGCACACGGGACAGACTAAAGTTGATTTGTATTGGCCCTGTAAAATAGATTTAGATTCAAAACTAAAACCGAACATGGCAAAGGGTGCTTGCCATAATGGCAATAATTGGAGAGTAAGTAGGTCAGTGAATAACAGAAATTCAAGTGCTAAAAGCCCGGAGTGTAAAATAGCCTCCTTTCTCATGCCAAAGATGTCTAAGCTCAAGCTCCCAAGTGATATAGGACCGTTACTCATTGATAAGCTTCAAAACTATGTAGGAGGTTCTGCATCTCCTGATGTCCTTATCCAAAGTGCTTCTACAAGGAACCGTTGTTGCTTTTCCATTTCTCGTGAGGGAACTCTATAA

Coding sequence (CDS)

ATGAACTTGTGCATGTTTCAGCAGAAGAGTCGTGATGATGAAGATCTTCTCCAGCATTCTTTCTTCACTGGGCCCTCACATGAGACTACCGACACTAGAGGAGTTCCAAAAGGTCTCCATCCTGACATTATGTCCGCATCACTAGTAACCCTGGCACAAAAGGCAGCAATATGGTCATCATCTTTTATCGTGGACAATGATATCAGTGGATCTTCCAGAAACCTTACACATCAGAGAAGTTCCATTGAGAAGAACTACAGAGCTGAAGCAGCTAAGACACAAATTCCGAACATGAACATATCCCTACACCGGCCCTGCTTTGGTACAGTGACAGTTAAAGTTGATGGACGCTTACTTCCATCACTAGTAAAAACAGTCACTGTCATAGTGCGGGTGGTGGTTGACTGGAGTGGCAACGAGAGATACATGAAGGGATCAAAAGTGACAGAAACTTTATTGCACACGGGACAGACTAAAGTTGATTTGTATTGGCCCTGTAAAATAGATTTAGATTCAAAACTAAAACCGAACATGGCAAAGGGTGCTTGCCATAATGGCAATAATTGGAGAGTAAGTAGGTCAGTGAATAACAGAAATTCAAGTGCTAAAAGCCCGGAGTGTAAAATAGCCTCCTTTCTCATGCCAAAGATGTCTAAGCTCAAGCTCCCAAGTGATATAGGACCGTTACTCATTGATAAGCTTCAAAACTATGTAGGAGGTTCTGCATCTCCTGATGTCCTTATCCAAAGTGCTTCTACAAGGAACCGTTGTTGCTTTTCCATTTCTCGTGAGGGAACTCTATAA

Protein sequence

MNLCMFQQKSRDDEDLLQHSFFTGPSHETTDTRGVPKGLHPDIMSASLVTLAQKAAIWSSSFIVDNDISGSSRNLTHQRSSIEKNYRAEAAKTQIPNMNISLHRPCFGTVTVKVDGRLLPSLVKTVTVIVRVVVDWSGNERYMKGSKVTETLLHTGQTKVDLYWPCKIDLDSKLKPNMAKGACHNGNNWRVSRSVNNRNSSAKSPECKIASFLMPKMSKLKLPSDIGPLLIDKLQNYVGGSASPDVLIQSASTRNRCCFSISREGTL
Homology
[Close]
BLAST of CsGy1G012940 vs. NCBI nr
Match: BAT18136.1 (Os12g0621025 [Oryza sativa Japonica Group])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 105 PCFGTVTVKVDGRLLPSLVKTVTVIVRVVVDWSGNERYMKGSKVTETLLHTGQTKVDLY 164
           P FGT+TV  DG ++PS++KTV VIV +VV+  G +RYM GS VT+T L +GQT VDLY
Sbjct: 81  PDFGTLTVYGDGPVVPSVLKTVIVIVLIVVEGRGKDRYMNGSNVTDTFLQSGQTNVDLY 139

[Close]
BLAST of CsGy1G012940 vs. TrEMBL
Match: tr|A0A0P0YD86|A0A0P0YD86_ORYSJ (Os12g0621025 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0621025 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 105 PCFGTVTVKVDGRLLPSLVKTVTVIVRVVVDWSGNERYMKGSKVTETLLHTGQTKVDLY 164
           P FGT+TV  DG ++PS++KTV VIV +VV+  G +RYM GS VT+T L +GQT VDLY
Sbjct: 81  PDFGTLTVYGDGPVVPSVLKTVIVIVLIVVEGRGKDRYMNGSNVTDTFLQSGQTNVDLY 139

[Close]
BLAST of CsGy1G012940 vs. TrEMBL
Match: tr|A0A0A9GV24|A0A0A9GV24_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 128 VIVRVVVDWSGNERYMKGSKVTETLLHTGQTKVDLYWPCKI 169
           VIV +VV+  G ++Y+ GS VTET L  GQT VDLYWP +I
Sbjct: 2   VIVLIVVEGRGKDKYINGSNVTETFLQMGQTNVDLYWPWQI 42

The following BLAST results are available for this feature:
BLAST of CsGy1G012940 vs. NCBI nr
Match NameE-valueIdentityDescription
BAT18136.12.0e-0959.32Os12g0621025 [Oryza sativa Japonica Group][more]
BLAST of CsGy1G012940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G012940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G012940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0P0YD86|A0A0P0YD86_ORYSJ1.3e-0959.32Os12g0621025 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0621025 PE... [more]
tr|A0A0A9GV24|A0A0A9GV24_ARUDO4.9e-0458.54Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G012940.1CsGy1G012940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G012940Cucumber (Chinese Long) v2cgybcuB001
CsGy1G012940Cucumber (Chinese Long) v2cgybcuB046
CsGy1G012940Bottle gourd (USVL1VR-Ls)cgyblsiB003
CsGy1G012940Bottle gourd (USVL1VR-Ls)cgyblsiB020
CsGy1G012940Melon (DHL92) v3.5.1cgybmeB009
CsGy1G012940Melon (DHL92) v3.5.1cgybmeB010
CsGy1G012940Melon (DHL92) v3.6.1cgybmedB008
CsGy1G012940Melon (DHL92) v3.6.1cgybmedB009
CsGy1G012940Watermelon (Charleston Gray)cgybwcgB032
CsGy1G012940Watermelon (Charleston Gray)cgybwcgB035
CsGy1G012940Watermelon (97103) v1cgybwmB012
CsGy1G012940Watermelon (97103) v1cgybwmB072
CsGy1G012940Wild cucumber (PI 183967)cgybcpiB001
CsGy1G012940Wild cucumber (PI 183967)cgybcpiB043
CsGy1G012940Silver-seed gourdcarcgybB0449
CsGy1G012940Silver-seed gourdcarcgybB0723
CsGy1G012940Cucumber (Chinese Long) v3cgybcucB002
CsGy1G012940Cucumber (Chinese Long) v3cgybcucB050
CsGy1G012940Watermelon (97103) v2cgybwmbB030
CsGy1G012940Watermelon (97103) v2cgybwmbB034
CsGy1G012940Wax gourdcgybwgoB017
CsGy1G012940Wax gourdcgybwgoB034
CsGy1G012940Cucumber (Gy14) v2cgybcgybB040
CsGy1G012940Cucurbita maxima (Rimu)cgybcmaB061
CsGy1G012940Cucurbita maxima (Rimu)cgybcmaB110
CsGy1G012940Cucurbita maxima (Rimu)cgybcmaB124
CsGy1G012940Cucurbita moschata (Rifu)cgybcmoB057
CsGy1G012940Cucurbita moschata (Rifu)cgybcmoB104
CsGy1G012940Cucurbita moschata (Rifu)cgybcmoB114
CsGy1G012940Cucurbita pepo (Zucchini)cgybcpeB036
CsGy1G012940Cucurbita pepo (Zucchini)cgybcpeB084
CsGy1G012940Cucurbita pepo (Zucchini)cgybcpeB090