CsGy1G011210 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G011210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	polygalacturonase-like
Location	Chr1 : 6990395 .. 6991120 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAGGACATAACGTCATTAGATAGCAAGAATTATCATATTAATTTTTTGGGTTGCAAGAATCTTACCATTGACCACGTGACAATTATTGCATTGGAGAATAATCTCAACACATATGGAATTCATATAGTTCAGCATAGATTAACATTCTCAATACAATATCACTATCGAAGATGATTGTATATTTGTGAAAAATACCAACAAACAAGCAGTTACTAGCGATGTTACTTGCGAACCAGGTCATGGAATTAACATAGGAAGTTTGGAAAAATATAGCAAGGAAAAAGAAGTGGTATGAGTGACGACGGTGAAAAAAATGCAAGTTGACCAGTACTACAAACGATATTAGGATCAAAAGATGGTCAGATTCTGTCGACACATTTCCAGCTATTGACATGCATTTTGAAGATATAGAAATGGTTAATGTCAGCAATCTTGTCCTTATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTATGTACTAAAATTAGGCCTCCTTAGTTTTGATCTTATTAATTAACTCAAAAGACATTACTTCTTAAGAGTGGAGTTATGCATTTTTATTATGTTATCTTTGTTCTTTAGGTTCCATAAAAAATCAAGATCAACAGTCAAACTTGTTTGCAGTAAAAGTAATCCATGTGAGGGAGTGAAAGTTGTTGATATTGACCTCACTTATAGTGGAAGTGAAGGTCTTAACGTGCAAATGTGA

mRNA sequence

ATGGTAAAGGACATAACGTCATTAGATAGCAAGAATTATCATATTAATTTTTTGGGTTGCAAGAATCTTACCATTGACCACGTGACAATTATTGCATTGGAGAATAATCTCAACACATATGGAATTCATATAACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATAAAAAATCAAGATCAACAGTCAAACTTGTTTGCAGTAAAAGTAATCCATGTGAGGGAGTGAAAGTTGTTGATATTGACCTCACTTATAGTGGAAGTGAAGGTCTTAACGTGCAAATGTGA

Coding sequence (CDS)

ATGGTAAAGGACATAACGTCATTAGATAGCAAGAATTATCATATTAATTTTTTGGGTTGCAAGAATCTTACCATTGACCACGTGACAATTATTGCATTGGAGAATAATCTCAACACATATGGAATTCATATAACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTTCCATAAAAAATCAAGATCAACAGTCAAACTTGTTTGCAGTAAAAGTAATCCATGTGAGGGAGTGAAAGTTGTTGATATTGACCTCACTTATAGTGGAAGTGAAGGTCTTAACGTGCAAATGTGA

Protein sequence

MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKNIVHGTNATERFHKKSRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEGLNVQM

Homology

[Close]

BLAST of CsGy1G011210 vs. NCBI nr
Match: KGN64581.1 (hypothetical protein Csa_1G066500 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +VKDITSLDSKNYHIN LGCKNLT DHVTI A EN+ NT GIH++ +
Sbjct: 60  IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPENSPNTDGIHVSSS 106

[Close]

BLAST of CsGy1G011210 vs. NCBI nr
Match: XP_011652893.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +VKDITSLDSKNYHIN LGCKNLT DHVTI A EN+ NT GIH++ +
Sbjct: 158 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPENSPNTDGIHVSSS 204

HSP 2 Score: 53.1 bits (126), Expect = 6.0e-04
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 49  VHGTNATERFHKKSRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           + GT+AT          VK+VCS+SNPCE V+V DIDLTYSGSEG
Sbjct: 335 IRGTSAT-------AVAVKIVCSQSNPCEEVEVADIDLTYSGSEG 372

[Close]

BLAST of CsGy1G011210 vs. NCBI nr
Match: XP_022151199.1 (exopolygalacturonase-like, partial [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-10
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +VKDITSLDSKNYHIN LGCKN+TI HVTI A EN+ NT G+HI+ +
Sbjct: 159 IVKDITSLDSKNYHINLLGCKNVTIQHVTITAPENSPNTDGVHISSS 205

HSP 2 Score: 51.2 bits (121), Expect = 2.3e-03
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 49  VHGTNATERFHKKSRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           + GT+AT          VKLVCSKS PCE V+V DIDLTYSGS+G
Sbjct: 336 IRGTSATP-------IAVKLVCSKSVPCEDVEVADIDLTYSGSQG 373

[Close]

BLAST of CsGy1G011210 vs. NCBI nr
Match: XP_008466933.1 (PREDICTED: polygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
          +VKDITSLDSKNYHIN LGCKNLT DHVTI A  N+ NT GIH++ +
Sbjct: 51 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSS 97

[Close]

BLAST of CsGy1G011210 vs. NCBI nr
Match: XP_016903689.1 (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +VKDITSLDSKNYHIN LGCKNLT DHVTI A  N+ NT GIH++ +
Sbjct: 111 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSS 157

HSP 2 Score: 56.2 bits (134), Expect = 7.1e-05
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 49  VHGTNATERFHKKSRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           + GT+AT          VK+VCS+SNPCEGV+V DIDLTYSGSEG
Sbjct: 288 IRGTSATP-------VAVKIVCSQSNPCEGVEVADIDLTYSGSEG 325

[Close]

BLAST of CsGy1G011210 vs. TAIR10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-08
Identity = 22/46 (47.83%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 2   VKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           ++DI+S+D+KN+HIN LG KN+T++++ I+A E++ NT GIH+ ++
Sbjct: 151 IRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRS 196

HSP 2 Score: 41.6 bits (96), Expect = 3.3e-04
Identity = 15/32 (46.88%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 62  SRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           ++  VKL+CSK  PC+ V++ DID+ Y+G++G
Sbjct: 333 NKDAVKLLCSKGYPCQNVEIGDIDIKYNGADG 364

[Close]

BLAST of CsGy1G011210 vs. TAIR10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-08
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 2   VKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           ++DI+S+D+KN+HIN LG KN+T D+V +IA   + NT GIH+ ++
Sbjct: 152 IRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRS 197

[Close]

BLAST of CsGy1G011210 vs. TAIR10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-08
Identity = 22/47 (46.81%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 2   VKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKNI 49
           ++DI+S+D+KN+HIN +G KN+T D+V I+A   + NT GIH+ +++
Sbjct: 152 IRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSV 198

HSP 2 Score: 41.2 bits (95), Expect = 4.3e-04
Identity = 16/32 (50.00%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 62  SRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           ++  VKL+CSK  PCE V+V DI++ Y+G++G
Sbjct: 334 NKDAVKLLCSKGYPCENVQVGDINIQYTGADG 365

[Close]

BLAST of CsGy1G011210 vs. TAIR10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 2   VKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           ++ ITSLD+K++HIN +G KN+T + V IIA   + NT GIH+ ++
Sbjct: 151 IRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRS 196

HSP 2 Score: 39.7 bits (91), Expect = 1.3e-03
Identity = 14/32 (43.75%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 62  SRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           ++  VKL+CSK  PC+ V+V D+++ Y+G++G
Sbjct: 333 NKDAVKLLCSKGYPCQNVEVGDVNIQYTGADG 364

[Close]

BLAST of CsGy1G011210 vs. TAIR10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.7e-05
Identity = 21/46 (45.65%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 2   VKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +  ITS +SK +H+N L CKN+T+  + I A   +LNT GIHI ++
Sbjct: 202 INSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRS 247

[Close]

BLAST of CsGy1G011210 vs. Swiss-Prot
Match: sp|P24548|PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-08
Identity = 24/47 (51.06%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +++D+T+LDSKN+H+N +GCKNLT +   I A E ++NT GIHI ++
Sbjct: 119 ILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRS 165

HSP 2 Score: 48.1 bits (113), Expect = 6.3e-05
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 62  SRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           ++  VKLVCSKS PC GV++ DIDLTYSG  G
Sbjct: 301 TKEAVKLVCSKSFPCNGVELADIDLTYSGKGG 332

[Close]

BLAST of CsGy1G011210 vs. Swiss-Prot
Match: sp|Q6H9K0|PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.8e-07
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHI 45
           MV+DITSL+SK +HIN L C+++T  HVT+ A   ++NT GIH+
Sbjct: 140 MVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHV 183

[Close]

BLAST of CsGy1G011210 vs. Swiss-Prot
Match: sp|P35337|PGLR_BRANA (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.7e-06
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 2   VKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHI 45
           +KD+TSLD+KN+H N +  KN+T D++ IIA   + NT GIH+
Sbjct: 151 IKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHL 193

HSP 2 Score: 40.8 bits (94), Expect = 1.0e-02
Identity = 19/52 (36.54%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 42  IHITKNIVHGTNATERFHKKSRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           + IT   + GT+       +++  VKL+CSK +PCE V++ DI++ Y+G +G
Sbjct: 320 VDITFRNIRGTS-------ENKDAVKLLCSKGHPCENVEIGDINIEYTGPDG 364

[Close]

BLAST of CsGy1G011210 vs. Swiss-Prot
Match: sp|W8P8Q3|SALK6_KALTU (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 7.5e-06
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 2   VKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITK-NIVHGTNA 55
           +  I SL+SK YH+  +GCKN+T+  +TI A +++LNT G+HI + N VH TN+
Sbjct: 160 ISGIKSLNSKLYHMGVMGCKNITLTGLTIDAPKDSLNTDGMHIGRSNGVHATNS 213

HSP 2 Score: 42.0 bits (97), Expect = 4.5e-03
Identity = 17/35 (48.57%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 61  KSRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEGLN 96
           KS   VKL+CS + PC+GV++ DIDLT+ G   ++
Sbjct: 340 KSAEVVKLLCSSAVPCDGVELADIDLTFPGGAAVS 374

[Close]

BLAST of CsGy1G011210 vs. Swiss-Prot
Match: sp|Q40312|PGLR_MEDSA (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-05
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +V+ +TS DSKN+H+   GCKN+T D  TI A  ++ NT GIH+ K+
Sbjct: 159 IVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKS 205

[Close]

BLAST of CsGy1G011210 vs. TrEMBL
Match: tr|A0A0A0LX75|A0A0A0LX75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066500 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.8e-11
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +VKDITSLDSKNYHIN LGCKNLT DHVTI A EN+ NT GIH++ +
Sbjct: 60  IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPENSPNTDGIHVSSS 106

[Close]

BLAST of CsGy1G011210 vs. TrEMBL
Match: tr|A0A1S3CSC5|A0A1S3CSC5_CUCME (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504301 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.4e-10
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
          +VKDITSLDSKNYHIN LGCKNLT DHVTI A  N+ NT GIH++ +
Sbjct: 51 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSS 97

[Close]

BLAST of CsGy1G011210 vs. TrEMBL
Match: tr|A0A1S4E643|A0A1S4E643_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.4e-10
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +VKDITSLDSKNYHIN LGCKNLT DHVTI A  N+ NT GIH++ +
Sbjct: 111 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSS 157

HSP 2 Score: 56.2 bits (134), Expect = 4.7e-05
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 49  VHGTNATERFHKKSRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           + GT+AT          VK+VCS+SNPCEGV+V DIDLTYSGSEG
Sbjct: 288 IRGTSATP-------VAVKIVCSQSNPCEGVEVADIDLTYSGSEG 325

[Close]

BLAST of CsGy1G011210 vs. TrEMBL
Match: tr|A0A0A0KPH7|A0A0A0KPH7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266870 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
          +VKDITSLDSKN+HIN LGCKN+T +HVTI A EN+ NT GIHI+ +
Sbjct: 53 IVKDITSLDSKNFHINLLGCKNITFEHVTISAPENSPNTDGIHISSS 99

[Close]

BLAST of CsGy1G011210 vs. TrEMBL
Match: tr|A0A1S3B3X5|A0A1S3B3X5_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-09
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MVKDITSLDSKNYHINFLGCKNLTIDHVTIIALENNLNTYGIHITKN 48
           +VKDITSLDSKNYHIN LGCKNLT DHVTI A  ++ NT GIH++ +
Sbjct: 156 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGDSPNTDGIHVSSS 202

HSP 2 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 49  VHGTNATERFHKKSRSTVKLVCSKSNPCEGVKVVDIDLTYSGSEG 94
           + GT+AT          VK+VCSKSNPCE V+V DIDLTYSGSEG
Sbjct: 333 IRGTSATP-------VAVKIVCSKSNPCEEVEVADIDLTYSGSEG 370

The following BLAST results are available for this feature:

BLAST of CsGy1G011210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64581.1	1.5e-10	74.47	hypothetical protein Csa_1G066500 [Cucumis sativus]	[more]
XP_011652893.1	1.5e-10	74.47	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
XP_022151199.1	5.6e-10	72.34	exopolygalacturonase-like, partial [Momordica charantia]	[more]
XP_008466933.1	9.6e-10	72.34	PREDICTED: polygalacturonase-like, partial [Cucumis melo]	[more]
XP_016903689.1	9.6e-10	72.34	PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]	[more]

BLAST of CsGy1G011210 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07820.1	2.9e-08	47.83	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	4.9e-08	50.00	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	6.4e-08	46.81	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	1.6e-06	47.83	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	1.7e-05	45.65	Pectin lyase-like superfamily protein	[more]

BLAST of CsGy1G011210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P24548\|PGLR_OENOR	2.8e-08	51.06	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
sp\|Q6H9K0\|PGLR2_PLAAC	6.8e-07	54.55	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
sp\|P35337\|PGLR_BRANA	5.7e-06	51.16	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
sp\|W8P8Q3\|SALK6_KALTU	7.5e-06	48.15	Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P...	[more]
sp\|Q40312\|PGLR_MEDSA	1.3e-05	48.94	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]

BLAST of CsGy1G011210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LX75\|A0A0A0LX75_CUCSA	9.8e-11	74.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066500 PE=3 SV=1	[more]
tr\|A0A1S3CSC5\|A0A1S3CSC5_CUCME	6.4e-10	72.34	polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504301 PE=3 SV=1	[more]
tr\|A0A1S4E643\|A0A1S4E643_CUCME	6.4e-10	72.34	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1	[more]
tr\|A0A0A0KPH7\|A0A0A0KPH7_CUCSA	1.4e-09	70.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266870 PE=3 SV=1	[more]
tr\|A0A1S3B3X5\|A0A1S3B3X5_CUCME	2.4e-09	70.21	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR000743	Glyco_hydro_28

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0071555	cell wall organization
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G011210.1	CsGy1G011210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 2..46 e-value: 5.1E-7 score: 29.0
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 1..55 e-value: 1.8E-9 score: 39.0
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..47
None	No IPR available	PANTHER	PTHR31375:SF37	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..47
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	SSF51126	Pectin lyase-like	coord: 2..91

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G011210	Watermelon (97103) v2	cgybwmbB002
CsGy1G011210	Watermelon (97103) v2	cgybwmbB016
CsGy1G011210	Watermelon (97103) v2	cgybwmbB032
CsGy1G011210	Wax gourd	cgybwgoB020
CsGy1G011210	Wax gourd	cgybwgoB043
CsGy1G011210	Wax gourd	cgybwgoB048
CsGy1G011210	Cucumber (Gy14) v2	cgybcgybB035
CsGy1G011210	Cucurbita maxima (Rimu)	cgybcmaB002
CsGy1G011210	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G011210	Cucurbita maxima (Rimu)	cgybcmaB084
CsGy1G011210	Cucurbita maxima (Rimu)	cgybcmaB086
CsGy1G011210	Cucurbita maxima (Rimu)	cgybcmaB108
CsGy1G011210	Cucurbita maxima (Rimu)	cgybcmaB126
CsGy1G011210	Cucurbita maxima (Rimu)	cgybcmaB142
CsGy1G011210	Cucurbita moschata (Rifu)	cgybcmoB003
CsGy1G011210	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G011210	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G011210	Cucurbita moschata (Rifu)	cgybcmoB101
CsGy1G011210	Cucurbita moschata (Rifu)	cgybcmoB116
CsGy1G011210	Cucurbita moschata (Rifu)	cgybcmoB133
CsGy1G011210	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G011210	Cucurbita pepo (Zucchini)	cgybcpeB023
CsGy1G011210	Cucurbita pepo (Zucchini)	cgybcpeB066
CsGy1G011210	Cucurbita pepo (Zucchini)	cgybcpeB070
CsGy1G011210	Cucurbita pepo (Zucchini)	cgybcpeB102
CsGy1G011210	Cucurbita pepo (Zucchini)	cgybcpeB140
CsGy1G011210	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G011210	Cucumber (Chinese Long) v2	cgybcuB039
CsGy1G011210	Bottle gourd (USVL1VR-Ls)	cgyblsiB015
CsGy1G011210	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G011210	Bottle gourd (USVL1VR-Ls)	cgyblsiB026
CsGy1G011210	Bottle gourd (USVL1VR-Ls)	cgyblsiB046
CsGy1G011210	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G011210	Melon (DHL92) v3.5.1	cgybmeB076
CsGy1G011210	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G011210	Melon (DHL92) v3.6.1	cgybmedB072
CsGy1G011210	Watermelon (Charleston Gray)	cgybwcgB013
CsGy1G011210	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G011210	Watermelon (97103) v1	cgybwmB010
CsGy1G011210	Watermelon (97103) v1	cgybwmB044
CsGy1G011210	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G011210	Wild cucumber (PI 183967)	cgybcpiB037
CsGy1G011210	Silver-seed gourd	carcgybB0637
CsGy1G011210	Silver-seed gourd	carcgybB0788
CsGy1G011210	Silver-seed gourd	carcgybB0889
CsGy1G011210	Silver-seed gourd	carcgybB0919
CsGy1G011210	Silver-seed gourd	carcgybB0992
CsGy1G011210	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G011210	Cucumber (Chinese Long) v3	cgybcucB045