CsGy1G010580 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G010580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
LocationChr1 : 6670224 .. 6671748 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAGAATTAGAAGAAGCTTCTTTTTTATTATCTGACATGATTAATAGGCGTATTCTCCCTGATGAGTTTACCTACTCCATCCTTACAAAAGGTCTTTGCGTAAGTGGACATCTCAATAAAGCTTTAAGAGTTCACTACTACATTGTCGAAAGAAGCCTTGTAAGAGATGCATTTACTTATAATATTCTTATCAACTATATGTTTCAGAGCCGGAATATAGCAGGCGCCAAGCAACTACTGAGCAGTATGATCGTTGGTGGTATCAAACCTGACATGGTTACTTATGGCACTCCGGTTGATGGGCATTGTAAGGAAGGAAAAATTGAAGCTGCGGTTCAGATTTATGACAAAACAGTTAAGGCAGATGGGAAATCCAACTTGGTGGTGTATAATTCTATTTTAGATGGGCTGTGCAAGCAAGGTTCAATTTATGCTGCTAAACTCTTGGTAGACAAATTACAGCAAAATGGTTTTCTCGATCCAGTTACCTATAACACATTGCTACATGGATTCTGCGTCAATGGGGAGATCGAGAAGGCTTTTGCACTGTTTTTAGAGATGATTAATGTGGGGAGTTTGGTGAACATAGTTTCTTACAATATAATGATTCACTTTCTATGCAAGATGGGATTGATCCAACAAGCCATGGAACTGATGAGAGCAATGTCTAGCCAGGGTATCATTCCCGACCTTATAACATACACGACTCTCATCACCAATTTTGTTGAGATTTGTGGCTCCAAGGATGTAATTGAGTTACATGATTATATGGTGCTTAAAGGAGCAGTTCCTGATAGGAAAACATACCGGTCTTTTGTAAGCCCCTGCCTTCAAGAACACACTGAGAGGTAGCCCCGCATAGCACGATTGGAACATACCTACAGATTGCAGCAGTAGGATGAAATATTACATTTTTTGCTTCAGAACGAACTGTATTATATAATAAATGCTAGTGTTCCCCCCATAAATTGTTAAATCGATCAAATGTAAATTATTACTTGTAAATTTAACTTTGTCAGTTGTAAATTCATTTGCCTTTTCAAGTATAAAAAATATATTTATTGTTCTGAACTTCTAATTAGTCCAAAATTCATGCACCCAAGCGCTTGGTGATCAGGTAGTTTGTGTTGACAGGCTTGGTGCATTGATGTGCCTCAAAAGTATGTTGAGCGGCTGCAATTGATTGGTTCTTACGTTGGTATCCCCGGCGATGAAAGCGTTGCATCTTGTTAGTTCCTTTAGGTTGGCGGCACCCCTTGTTGGGTGTAGGACGAATCCCGAAGTGTGCGTCACATTTTGCTTAGTCAACGGCATGGTATGCTTGAAAAGTCACATTGATCCGTTGTCCCAGAAATGATCTAACCTCCTCCGTTAGTCTATGCGACATCCACTTAGCAATGTGTTCTAGTTTGTAAAGCTTCCCACTTCTCTAGTTTTACTGTTTCTCATACCTTCTCTCAAGTCTAATCCCAGGATTGAAAAGGATCGGCAGGATTTGGTTAGAGAATATTCGCAATAA

mRNA sequence

ATGGAAGGAGAATTAGAAGAAGCTTCTTTTTTATTATCTGACATGATTAATAGGCGTATTCTCCCTGATGAGTTTACCTACTCCATCCTTACAAAAGGTCTTTGCGTAAGTGGACATCTCAATAAAGCTTTAAGAGTTCACTACTACATTGTCGAAAGAAGCCTTGTAAGAGATGCATTTACTTATAATATTCTTATCAACTATATGTTTCAGAGCCGGAATATAGCAGGCGCCAAGCAACTACTGAGCAGTATGATCGTTGGTGGTATCAAACCTGACATGGTTACTTATGGCACTCCGGTTGATGGGCATTGTAAGGAAGGAAAAATTGAAGCTGCGGTTCAGATTTATGACAAAACAGTTAAGGCAGATGGGAAATCCAACTTGGTGGTGTATAATTCTATTTTAGATGGGCTGTGCAAGCAAGGTTCAATTTATGCTGCTAAACTCTTGGTAGACAAATTACAGCAAAATGGTTTTCTCGATCCAGTTACCTATAACACATTGCTACATGGATTCTGCGTCAATGGGGAGATCGAGAAGGCTTTTGCACTGTTTTTAGAGATGATTAATGTGGGGAGTTTGGTGAACATAGTTTCTTACAATATAATGATTCACTTTCTATGCAAGATGGGATTGATCCAACAAGCCATGGAACTGATGAGAGCAATGTCTAGCCAGGGTATCATTCCCGACCTTATAACATACACGACTCTCATCACCAATTTTGTTGAGATTTGTGGCTCCAAGGATGTAATTGAGTTACATGATTATATGGTGCTTAAAGGAGCAGTTCCTGATAGGAAAACATACCGGTCTTTTGTAAGCCCCTGCCTTCAAGAACACACTGAGAGGTTGGCGGCACCCCTTGTTGGGTGTAGGACGAATCCCGAAGTGTGCGTCACATTTTGCTTAGTCAACGGCATGTCTAATCCCAGGATTGAAAAGGATCGGCAGGATTTGGTTAGAGAATATTCGCAATAA

Coding sequence (CDS)

ATGGAAGGAGAATTAGAAGAAGCTTCTTTTTTATTATCTGACATGATTAATAGGCGTATTCTCCCTGATGAGTTTACCTACTCCATCCTTACAAAAGGTCTTTGCGTAAGTGGACATCTCAATAAAGCTTTAAGAGTTCACTACTACATTGTCGAAAGAAGCCTTGTAAGAGATGCATTTACTTATAATATTCTTATCAACTATATGTTTCAGAGCCGGAATATAGCAGGCGCCAAGCAACTACTGAGCAGTATGATCGTTGGTGGTATCAAACCTGACATGGTTACTTATGGCACTCCGGTTGATGGGCATTGTAAGGAAGGAAAAATTGAAGCTGCGGTTCAGATTTATGACAAAACAGTTAAGGCAGATGGGAAATCCAACTTGGTGGTGTATAATTCTATTTTAGATGGGCTGTGCAAGCAAGGTTCAATTTATGCTGCTAAACTCTTGGTAGACAAATTACAGCAAAATGGTTTTCTCGATCCAGTTACCTATAACACATTGCTACATGGATTCTGCGTCAATGGGGAGATCGAGAAGGCTTTTGCACTGTTTTTAGAGATGATTAATGTGGGGAGTTTGGTGAACATAGTTTCTTACAATATAATGATTCACTTTCTATGCAAGATGGGATTGATCCAACAAGCCATGGAACTGATGAGAGCAATGTCTAGCCAGGGTATCATTCCCGACCTTATAACATACACGACTCTCATCACCAATTTTGTTGAGATTTGTGGCTCCAAGGATGTAATTGAGTTACATGATTATATGGTGCTTAAAGGAGCAGTTCCTGATAGGAAAACATACCGGTCTTTTGTAAGCCCCTGCCTTCAAGAACACACTGAGAGGTTGGCGGCACCCCTTGTTGGGTGTAGGACGAATCCCGAAGTGTGCGTCACATTTTGCTTAGTCAACGGCATGTCTAATCCCAGGATTGAAAAGGATCGGCAGGATTTGGTTAGAGAATATTCGCAATAA

Protein sequence

MEGELEEASFLLSDMINRRILPDEFTYSILTKGLCVSGHLNKALRVHYYIVERSLVRDAFTYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDGHCKEGKIEAAVQIYDKTVKADGKSNLVVYNSILDGLCKQGSIYAAKLLVDKLQQNGFLDPVTYNTLLHGFCVNGEIEKAFALFLEMINVGSLVNIVSYNIMIHFLCKMGLIQQAMELMRAMSSQGIIPDLITYTTLITNFVEICGSKDVIELHDYMVLKGAVPDRKTYRSFVSPCLQEHTERLAAPLVGCRTNPEVCVTFCLVNGMSNPRIEKDRQDLVREYSQ
Homology
[Close]
BLAST of CsGy1G010580 vs. NCBI nr
Match: KGN64519.1 (hypothetical protein Csa_1G062940 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-04
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 2   EGELEEASFLLSDMIN-RRILPDEFTYSILTKGLCVSGH 40
           +G L+ A  L  +M+  RRILPDEFTYSILTKGLCVSGH
Sbjct: 74  KGSLDVAFRLCDEMVEMRRILPDEFTYSILTKGLCVSGH 112

[Close]
BLAST of CsGy1G010580 vs. TrEMBL
Match: tr|A0A0A0LU83|A0A0A0LU83_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062940 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-04
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 2   EGELEEASFLLSDMIN-RRILPDEFTYSILTKGLCVSGH 40
           +G L+ A  L  +M+  RRILPDEFTYSILTKGLCVSGH
Sbjct: 74  KGSLDVAFRLCDEMVEMRRILPDEFTYSILTKGLCVSGH 112

The following BLAST results are available for this feature:
BLAST of CsGy1G010580 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64519.19.0e-0469.23hypothetical protein Csa_1G062940 [Cucumis sativus][more]
BLAST of CsGy1G010580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G010580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G010580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LU83|A0A0A0LU83_CUCSA6.0e-0469.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062940 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G010580.1CsGy1G010580.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 2..35
e-value: 2.2E-7
score: 30.8
coord: 197..243
e-value: 2.5E-13
score: 49.9
coord: 58..106
e-value: 1.7E-10
score: 40.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 164..196
e-value: 9.5E-9
score: 32.9
coord: 95..120
e-value: 4.1E-4
score: 18.3
coord: 130..160
e-value: 7.1E-5
score: 20.7
coord: 60..93
e-value: 2.8E-6
score: 25.1
coord: 199..232
e-value: 1.4E-8
score: 32.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 130..160
e-value: 9.7E-4
score: 19.1
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 161..189
e-value: 2.1E-10
score: 40.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..158
score: 8.451
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 197..231
score: 12.353
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 232..266
score: 8.298
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 58..92
score: 10.26
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..22
score: 5.974
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 93..127
score: 8.901
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 162..196
score: 11.816
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 23..57
score: 9.109
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..123
e-value: 8.4E-26
score: 93.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 124..195
e-value: 3.3E-15
score: 57.8
coord: 196..288
e-value: 2.2E-19
score: 71.5
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 2..282
NoneNo IPR availablePANTHERPTHR24015:SF1586SUBFAMILY NOT NAMEDcoord: 2..282
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 58..193

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G010580Cla019381Watermelon (97103) v1cgybwmB010
CsGy1G010580Csa1G062940Cucumber (Chinese Long) v2cgybcuB001
CsGy1G010580ClCG03G004730Watermelon (Charleston Gray)cgybwcgB033
CsGy1G010580CSPI01G10690Wild cucumber (PI 183967)cgybcpiB001
CsGy1G010580CmaCh13G007390Cucurbita maxima (Rimu)cgybcmaB074
CsGy1G010580CmoCh13G007700Cucurbita moschata (Rifu)cgybcmoB068
CsGy1G010580Lsi02G006000Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G010580Cp4.1LG20g03630Cucurbita pepo (Zucchini)cgybcpeB070
CsGy1G010580MELO3C035731.2Melon (DHL92) v3.6.1cgybmedB020
CsGy1G010580CsaV3_1G010760Cucumber (Chinese Long) v3cgybcucB002
CsGy1G010580Cla97C03G055880Watermelon (97103) v2cgybwmbB032
CsGy1G010580Bhi08G001505Wax gourdcgybwgoB030
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G010580Cucumber (Gy14) v2cgybcgybB035
CsGy1G010580Cucurbita maxima (Rimu)cgybcmaB093
CsGy1G010580Cucurbita maxima (Rimu)cgybcmaB126
CsGy1G010580Cucurbita maxima (Rimu)cgybcmaB142
CsGy1G010580Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G010580Cucurbita moschata (Rifu)cgybcmoB116
CsGy1G010580Cucurbita moschata (Rifu)cgybcmoB133
CsGy1G010580Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G010580Cucurbita pepo (Zucchini)cgybcpeB023
CsGy1G010580Cucurbita pepo (Zucchini)cgybcpeB067
CsGy1G010580Cucumber (Chinese Long) v2cgybcuB039
CsGy1G010580Bottle gourd (USVL1VR-Ls)cgyblsiB015
CsGy1G010580Melon (DHL92) v3.5.1cgybmeB022
CsGy1G010580Melon (DHL92) v3.5.1cgybmeB076
CsGy1G010580Melon (DHL92) v3.6.1cgybmedB072
CsGy1G010580Watermelon (Charleston Gray)cgybwcgB013
CsGy1G010580Watermelon (97103) v1cgybwmB044
CsGy1G010580Wild cucumber (PI 183967)cgybcpiB037
CsGy1G010580Silver-seed gourdcarcgybB0500
CsGy1G010580Silver-seed gourdcarcgybB0637
CsGy1G010580Silver-seed gourdcarcgybB0919
CsGy1G010580Silver-seed gourdcarcgybB0992
CsGy1G010580Cucumber (Chinese Long) v3cgybcucB045
CsGy1G010580Watermelon (97103) v2cgybwmbB002
CsGy1G010580Wax gourdcgybwgoB020