CsGy1G010440 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ankyrin repeat-containing protein At5g02620-like
Location	Chr1 : 6589526 .. 6591248 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACAATAGTCTGATGCAGCGGACGACTCACTGGCCTTCACCAAATTGGCTGGAAACGACGGGTTTTAGTTCTGGTGATCACCACCATGGAATAGACGTCGGCGGTGATTATTACGGGGGTTCATCGTCGATGAACGTGAAGGAGGATCAGGATCAGCCGATGATGGGTGGCGACGACGATAAAACTTCACAGCATAAGATGGGTATCAAATGGGCTAGAAATAAACTTCACAGCTTCCATATTCACATATGTAACTTATTTTTATTTATTTACATATGTAATTTAATATTACTACCTTTTGAATTCTTTTCACTCTTTTTTTTCTTTTTTTAAATAGGGAAATTTTAAATATTACTTTTAATGTTGTGTCCTAATAATTTTTTACATAATATTGAATTTTTCTTTGGTAAGGAAAAGCTTGGTAATTAATGTGTCTAATTATGATTAATTGTTGACATCTTTATAAATAAAATCAAAGCCCATACGATATGAAGTTGTTTAGTTTTAGAAAAGTTGAGTCTAGGGAGTTATTTATATATGTAATCTATGGTTATTAATAAAATCTAAAATTTGGGTATATTTTGTAATTTGTAAATATTTCATGATATGATGTATGAAATTTGTTTCAGGGAACCGAAGAAGGAAGCATGATTCAATACATATTCAGCTATGCGAAGCTGCAACAAGAGGCGATTGGAAGGCTGCAGAAGAAATAGAGAAGAAAAGCAAAGGAATCTTATCCGAGGTAATTAGCAAAGATAGAAAAGAAACAGCCCTTCACATTGCTACAAGATTCAACAAAGCTGCTTTTGTGGAGAAATTGATCAAATATAAGCTAACACAAACAGATTTGGAAGCCAAAAATATATATGGAAACACAGCCCTCTGCATTGCTGCTACATCAGGGGCTGTGGATATTGCGGAGTTAATGTTCCGAAAGCATAATGATTTAGTCCTCACTCGTGGCTCGGCCAATGCGACTCCAGTTTTGATTGCTGCTAGATATAAGCATAGCCATATGGTTTCTTTTCTCCTCAAGTCTATGAACAAAATTGTCCAAAAAATGGAAATTAGTGAGCAAATGGAGCTTCTTCTTAGTGCCATTGCCTCTGATCATTACGGTTTGTTGTTCAAAATCTCTACCTACCGCTATTATCTTCTTTTTCTTACTTTTTATACATCAATAATTTGCTTTTCGTTGCAATGGTATTATCAAAAAATGATTCTGTTTAGAACTAATTAAGGTTCGATAGGTTTAAAATAAAGAAAGGTTTAAAATAAATAGTACTTCTATTCTTTAGGTTTGTTCATCTACTAGAGATGTTTGGGTGCACACCTCATCCATGGTACTTTTTATTTAGAATTCATAACAAAATAATCATTAGTTTCTTCGAGGTGAAGAACAAAATGAAGACCCACACAAATCCTTATATTATGTAGCAAGATATGTGGAGGGGTATTTGATCGATCCGAGCTCCTACCATGTATGTATAGTGTATAATAGGTAGGATCAAATAGTTTTCTTAATTCATAACTCATCATATATATTTGTTTCTTTATACAGATATAGCTTTTCTTATTATAGAATGGAACAAGTCATTAGCACTGATACGAGATTCCAACGATGATACACCCTTGCATATAATGGCTCGAAAATCTAATGGCACAATTGGCACAAAAAATAACCCAACCAAGTGGCAATCATCCATCAATAAATGTTAG

mRNA sequence

TAACAATAGTCTGATGCAGCGGACGACTCACTGGCCTTCACCAAATTGGCTGGAAACGACGGGTTTTAGTTCTGGTGATCACCACCATGGAATAGACGTCGGCGGTGATTATTACGGGGGTTCATCGTCGATGAACGTGAAGGAGGATCAGGATCAGCCGATGATGGGTGGCGACGACGATAAAACTTCACAGCATAAGATGGGTATCAAATGGGCTAGAAATAAACTTCACAGCTTCCATATTCACATATGTTCGATAGATATAGCTTTTCTTATTATAGAATGGAACAAGTCATTAGCACTGATACGAGATTCCAACGATGATACACCCTTGCATATAATGGCTCGAAAATCTAATGGCACAATTGGCACAAAAAATAACCCAACCAAGTGGCAATCATCCATCAATAAATGTTAG

Coding sequence (CDS)

ATGCAGCGGACGACTCACTGGCCTTCACCAAATTGGCTGGAAACGACGGGTTTTAGTTCTGGTGATCACCACCATGGAATAGACGTCGGCGGTGATTATTACGGGGGTTCATCGTCGATGAACGTGAAGGAGGATCAGGATCAGCCGATGATGGGTGGCGACGACGATAAAACTTCACAGCATAAGATGGGTATCAAATGGGCTAGAAATAAACTTCACAGCTTCCATATTCACATATGTTCGATAGATATAGCTTTTCTTATTATAGAATGGAACAAGTCATTAGCACTGATACGAGATTCCAACGATGATACACCCTTGCATATAATGGCTCGAAAATCTAATGGCACAATTGGCACAAAAAATAACCCAACCAAGTGGCAATCATCCATCAATAAATGTTAG

Protein sequence

MQRTTHWPSPNWLETTGFSSGDHHHGIDVGGDYYGGSSSMNVKEDQDQPMMGGDDDKTSQHKMGIKWARNKLHSFHIHICSIDIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINKC

Homology

[Close]

BLAST of CsGy1G010440 vs. NCBI nr
Match: XP_008440886.1 (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 94/294 (31.97%), Postives = 99/294 (33.67%), Query Frame = 0


Query: 1   MQRTTHWPSPNWLETTGFSSGDHHHGIDV-GXXXXXXXXXXXXXXXXXXXXXXXXXXKTS 60
           M RTTH PS NW E TGFSS D HHGI++ G                XXX       KTS
Sbjct: 2   MHRTTHRPSSNWPEMTGFSS-DDHHGIEIGGDYYRGSSSAQVNVKEEXXXPMMGGDDKTS 61

Query: 61  QHKMGIKWARNKLHSFHIH-------------ICS------------------------- 120
            HKMGIKWARNKLHSF+IH             +C                          
Sbjct: 62  HHKMGIKWARNKLHSFNIHSRNRREHDPIHIQLCEAATRGDWKAAEEMEKKNKGILSNVI 121

Query: 121 ------------------------------------------------------------ 134
                                                                       
Sbjct: 122 SKDRKETALHIATRFNKAAFVEKLIESKLTIKDLEAKNIYGNTALCIAATSGAVDIAKLM 181

[Close]

BLAST of CsGy1G010440 vs. NCBI nr
Match: KGN64502.1 (hypothetical protein Csa_1G062280 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 83  DIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINKC 135
           DIAFLIIEWNKSLALIRDSND TPLHIMARKSNGTIGTKNNPTKWQSSINKC
Sbjct: 228 DIAFLIIEWNKSLALIRDSNDYTPLHIMARKSNGTIGTKNNPTKWQSSINKC 279

HSP 2 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1  MQRTTHWPSPNWLETTGFSSGDH 24
          MQRTTHWPSPNWLETTGFSSGDH
Sbjct: 1  MQRTTHWPSPNWLETTGFSSGDH 23

[Close]

BLAST of CsGy1G010440 vs. NCBI nr
Match: XP_011648419.1 (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 83  DIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINK 134
           DIAFLIIEWNKSLALIRDSND TPLHIMARKSNGTIGTKNNPTKWQSSINK
Sbjct: 228 DIAFLIIEWNKSLALIRDSNDYTPLHIMARKSNGTIGTKNNPTKWQSSINK 278

HSP 2 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1  MQRTTHWPSPNWLETTGFSSGDH 24
          MQRTTHWPSPNWLETTGFSSGDH
Sbjct: 1  MQRTTHWPSPNWLETTGFSSGDH 23

[Close]

BLAST of CsGy1G010440 vs. NCBI nr
Match: XP_023520202.1 (uncharacterized protein LOC111783506 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 83  DIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINKC 135
           ++A LI+  NKSLAL RD+NDDTPLHIMARKSN T+GTKNNPTKWQSS+++C
Sbjct: 228 NVALLILNENKSLALERDTNDDTPLHIMARKSN-TLGTKNNPTKWQSSLHRC 278

[Close]

BLAST of CsGy1G010440 vs. NCBI nr
Match: XP_022923771.1 (uncharacterized protein LOC111431379 [Cucurbita moschata])

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 83  DIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINKC 135
           D+A LI+  NK LAL RD NDDTPLHIMARKSN T+GTKNNPTKWQSS+++C
Sbjct: 251 DVALLILNGNKLLALERDVNDDTPLHIMARKSN-TLGTKNNPTKWQSSLHRC 301

[Close]

BLAST of CsGy1G010440 vs. TrEMBL
Match: tr|A0A1S3B1Q1|A0A1S3B1Q1_CUCME (ankyrin repeat-containing protein At5g02620-like OS=Cucumis melo OX=3656 GN=LOC103485171 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-20
Identity = 94/294 (31.97%), Postives = 99/294 (33.67%), Query Frame = 0


Query: 1   MQRTTHWPSPNWLETTGFSSGDHHHGIDV-GXXXXXXXXXXXXXXXXXXXXXXXXXXKTS 60
           M RTTH PS NW E TGFSS D HHGI++ G                XXX       KTS
Sbjct: 2   MHRTTHRPSSNWPEMTGFSS-DDHHGIEIGGDYYRGSSSAQVNVKEEXXXPMMGGDDKTS 61

Query: 61  QHKMGIKWARNKLHSFHIH-------------ICS------------------------- 120
            HKMGIKWARNKLHSF+IH             +C                          
Sbjct: 62  HHKMGIKWARNKLHSFNIHSRNRREHDPIHIQLCEAATRGDWKAAEEMEKKNKGILSNVI 121

Query: 121 ------------------------------------------------------------ 134
                                                                       
Sbjct: 122 SKDRKETALHIATRFNKAAFVEKLIESKLTIKDLEAKNIYGNTALCIAATSGAVDIAKLM 181

[Close]

BLAST of CsGy1G010440 vs. TrEMBL
Match: tr|A0A0A0LUS0|A0A0A0LUS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062280 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-20
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 83  DIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINKC 135
           DIAFLIIEWNKSLALIRDSND TPLHIMARKSNGTIGTKNNPTKWQSSINKC
Sbjct: 228 DIAFLIIEWNKSLALIRDSNDYTPLHIMARKSNGTIGTKNNPTKWQSSINKC 279

HSP 2 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1  MQRTTHWPSPNWLETTGFSSGDH 24
          MQRTTHWPSPNWLETTGFSSGDH
Sbjct: 1  MQRTTHWPSPNWLETTGFSSGDH 23

[Close]

BLAST of CsGy1G010440 vs. TrEMBL
Match: tr|A0A0A0LX18|A0A0A0LX18_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060780 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 83  DIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINKC 135
           DIA LI++ N  LAL RD ND+TPLHIMA+KSNGTIGTKN  T WQSSINKC
Sbjct: 147 DIALLILKENDHLALERDDNDNTPLHIMAKKSNGTIGTKNKLTDWQSSINKC 198

[Close]

BLAST of CsGy1G010440 vs. TrEMBL
Match: tr|A0A1S3B1P1|A0A1S3B1P1_CUCME (ankyrin repeat-containing protein At5g02620-like OS=Cucumis melo OX=3656 GN=LOC103485164 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.4e-12
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 83  DIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINKC 135
           ++A  I+E N  LAL RD  ++TPLHIMA+KSNGTIG KNNPTKWQSSINKC
Sbjct: 239 EMALSILEKNGDLALERDEQENTPLHIMAKKSNGTIGAKNNPTKWQSSINKC 290

[Close]

BLAST of CsGy1G010440 vs. TrEMBL
Match: tr|A0A1S3B239|A0A1S3B239_CUCME (ankyrin repeat-containing protein At5g02620-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485148 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 83  DIAFLIIEWNKSLALIRDSNDDTPLHIMARKSNGTIGTKNNPTKWQSSINK 134
           DIA LI+EWN SL L RD N++TPLHIMARKS G IG KN PTKW+S INK
Sbjct: 148 DIALLILEWNMSLTLQRDFNNETPLHIMARKS-GAIGKKNKPTKWESCINK 197

The following BLAST results are available for this feature:

BLAST of CsGy1G010440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440886.1	4.8e-20	31.97	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo]	[more]
KGN64502.1	4.8e-20	98.08	hypothetical protein Csa_1G062280 [Cucumis sativus]	[more]
XP_011648419.1	5.3e-19	98.04	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]	[more]
XP_023520202.1	1.3e-12	75.00	uncharacterized protein LOC111783506 [Cucurbita pepo subsp. pepo]	[more]
XP_022923771.1	2.8e-12	75.00	uncharacterized protein LOC111431379 [Cucurbita moschata]	[more]

BLAST of CsGy1G010440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G010440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B1Q1\|A0A1S3B1Q1_CUCME	3.2e-20	31.97	ankyrin repeat-containing protein At5g02620-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0LUS0\|A0A0A0LUS0_CUCSA	3.2e-20	98.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G062280 PE=4 SV=1	[more]
tr\|A0A0A0LX18\|A0A0A0LX18_CUCSA	3.2e-12	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060780 PE=4 SV=1	[more]
tr\|A0A1S3B1P1\|A0A1S3B1P1_CUCME	5.4e-12	71.15	ankyrin repeat-containing protein At5g02620-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S3B239\|A0A1S3B239_CUCME	1.0e-10	72.55	ankyrin repeat-containing protein At5g02620-like isoform X2 OS=Cucumis melo OX=3...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010440.1	CsGy1G010440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..60

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010440	Csa1G060780	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010440	CSPI01G10510	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010440	Lsi02G005820	Bottle gourd (USVL1VR-Ls)	cgyblsiB018

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010440	Cucumber (Gy14) v2	cgybcgybB035
CsGy1G010440	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G010440	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010440	Cucurbita maxima (Rimu)	cgybcmaB126
CsGy1G010440	Cucurbita maxima (Rimu)	cgybcmaB142
CsGy1G010440	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G010440	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010440	Cucurbita moschata (Rifu)	cgybcmoB116
CsGy1G010440	Cucurbita moschata (Rifu)	cgybcmoB133
CsGy1G010440	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010440	Cucurbita pepo (Zucchini)	cgybcpeB023
CsGy1G010440	Cucurbita pepo (Zucchini)	cgybcpeB067
CsGy1G010440	Cucurbita pepo (Zucchini)	cgybcpeB070
CsGy1G010440	Cucumber (Chinese Long) v2	cgybcuB039
CsGy1G010440	Bottle gourd (USVL1VR-Ls)	cgyblsiB015
CsGy1G010440	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010440	Melon (DHL92) v3.5.1	cgybmeB034
CsGy1G010440	Melon (DHL92) v3.5.1	cgybmeB076
CsGy1G010440	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010440	Melon (DHL92) v3.6.1	cgybmedB072
CsGy1G010440	Watermelon (Charleston Gray)	cgybwcgB013
CsGy1G010440	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010440	Watermelon (97103) v1	cgybwmB010
CsGy1G010440	Watermelon (97103) v1	cgybwmB044
CsGy1G010440	Wild cucumber (PI 183967)	cgybcpiB037
CsGy1G010440	Silver-seed gourd	carcgybB0500
CsGy1G010440	Silver-seed gourd	carcgybB0637
CsGy1G010440	Silver-seed gourd	carcgybB0919
CsGy1G010440	Silver-seed gourd	carcgybB0992
CsGy1G010440	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G010440	Cucumber (Chinese Long) v3	cgybcucB045
CsGy1G010440	Watermelon (97103) v2	cgybwmbB002
CsGy1G010440	Watermelon (97103) v2	cgybwmbB032
CsGy1G010440	Wax gourd	cgybwgoB030