CsGy1G010400 (gene) Cucumber (Gy14) v2

NameCsGy1G010400
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionAnkyrin repeat family protein
LocationChr1 : 6544676 .. 6546771 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGAAAGAAAGGGAAGCGAAGCCCACGTGAATTGTTCACTCAACAACACAAAGGTCTAGTTGAAGATGGAGAAAAATGGATGAAGAAAACAGCAAATTCATGTATGTTGGTTGCAACTCTCATCACCACCGTAGTTTTCGCTGCAATCTTCACCGTACCAGGTGGATACACCAACACCACCAGCACCACAGGGAGCGTCATCGAGAACAACAACAACACAGGCACTCCTCTATTTCTTTACCACAAATGGTTCACTGTTTTTGTGATATCAGATGCAACAGCTTTGATCTCATCTTCAACTGCCATACTATTGTTTTTGTCAATCCTCACATCACGTTGTGCAGAAGAAGATTTCCTTCTATGGCTCCCATTAAAGTTGGTATTTGGACTTGGAACTCTCTTCTTATCAGTAGTTACAATGGTATTGGCCTTTAGTGCCACATTTTTTTTGTTCTATGGCAAAGATACGGCTTGGGTCCCATTGCTTGTTGCTGGTATGGCTATTGTTCCTGTTTATTGTTTCGGTGTATTGCAGTTTAGGCTTTGGGCTGATGCAATAGCAGCTTTAAGGGCTACTTACTTCTTGTATTTTAGGGATGGGATAGTTGCAAATTTATCAACTATATTTAAAATAATTAACTATATAGCAACTTTTTAAAAAATTTGCAAATATAGCTGTCAAATTCTATCAATAATATAAGTCTATCACCGATAGACCATGTTGCAAATATCGGTCTATCACTGATAAACCATACGAAGTCTATCAGCGATACAAGTCTACCAGTGATAATCTTGCTATATTTGCACTTTTTTAAAAATATTGTTATATCCTTAATTACTATTCCTAAAATGTTCATCAATTACAATTTCCCTTTAGGGATTTTAAGCCCATATTATTGTTTTGATAGCTCTCAATCATTTGTTCTTTTCAAGAAAAAATAAATTATTATTACGTGGAACCAAATAACCATTGATTGGAATCTCCATTCTAGGAGACCCCTTCGTAGCTGTGAATTAACCAGGTGGATGAGCTTAATTCCACATTACTTACTCCTACATTTGTTGTAAATGGTCATGATTTGCCGACCTGGAAACTAAACACACAAGGGACTTTCAATATAGCCTTAGTAAAATCCGCCATCCACACAAGTGATAGTAGAGGGCGAAATTCTTTTGCTCCATAAACTTTTAGAAACTTGTGGAGATCCAGTATAACAAAAAAATGCAAGTTCTTCATATGGTCCCTTGTACATGAATGCATTAACATGGCTGACAATCTTCAAAAGAGGCTCCCTAACACGAATCTAAGACCAAACTGATGTGTTATGTGCAGAAAAAATGAAGAAAACAAACACCATCTCTTCCTACACTGCTCATATGCCGCTGCCATATGGGATAAATTAAGATTGATGCTTAATTGGAACTCCACACACTCCCGAACCTCCTCACTGTGCATTGATGTTAGTAAATTAAAACAAAAGAACAAAAAGATGATCATTTTATTCAACTTTGTGGTAATAGTTCTATGAAACATTTGGTTGGAAAGAAACAACAGAACGTTCAACGACAAAGAGAAGCGGCCAATTGATTTATGGGAAGATATTAAAGCTCTGGCGGGACTTTGGACTTGTAGATCCAAACACTTCTTAAATTATTCTCAGAGTTCTACTGCGCTTAATTTAAAAACAATAATAAATTATTGTTATTCGTGAAGTAGGTAGGAATGTACATTAAAATTCCATAATTATGAATTTAATTTGAATTATGATCCTAATCAAAATTCATTATTGATTGATACGTGTGTGGTCACATGATGATCACAAGATCCTATGCGTGTATATAATTTACTTTATTAAGAATAAAACATGCCTAATTGGTCTAAAATTTGAGTCTTTATTGTCTATAAATAAAATTGTAAATTTGGAACAACAAATTTTAAAATATGAAGAATTAGACGGATGTAACATAAATTTTTAAAATCAGAGAATATGCAAAAAAAAAAAAAAAAAAAAAAGATACCCGATTCAAATTTGATTTTTTTTTTCTTTTAACAAGATATTAGAAGAAAAGAGGAGTGAAGGGTGTGTTTGA

mRNA sequence

ATGAGGAGAAAGAAAGGGAAGCGAAGCCCACGTGAATTGTTCACTCAACAACACAAAGGTCTAGTTGAAGATGGAGAAAAATGGATGAAGAAAACAGCAAATTCATGTATGTTGGTTGCAACTCTCATCACCACCGTAGTTTTCGCTGCAATCTTCACCGTACCAGGTGGATACACCAACACCACCAGCACCACAGGGAGCATATTAGAAGAAAAGAGGAGTGAAGGGTGTGTTTGA

Coding sequence (CDS)

ATGAGGAGAAAGAAAGGGAAGCGAAGCCCACGTGAATTGTTCACTCAACAACACAAAGGTCTAGTTGAAGATGGAGAAAAATGGATGAAGAAAACAGCAAATTCATGTATGTTGGTTGCAACTCTCATCACCACCGTAGTTTTCGCTGCAATCTTCACCGTACCAGGTGGATACACCAACACCACCAGCACCACAGGGAGCATATTAGAAGAAAAGAGGAGTGAAGGGTGTGTTTGA

Protein sequence

MRRKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTTSTTGSILEEKRSEGCV
BLAST of CsGy1G010400 vs. NCBI nr
Match: XP_022954801.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-19
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   MRRKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTN 60
           MRRKKGKR+PRELFT++H+ LVE+GEKWMKKTANSCMLVATLI TVVFAAIFTVPGG  N
Sbjct: 479 MRRKKGKRNPRELFTKEHRNLVEEGEKWMKKTANSCMLVATLIATVVFAAIFTVPGGNNN 538

Query: 61  TTS-TTGSIL 70
                TGS L
Sbjct: 539 NHDINTGSPL 548

BLAST of CsGy1G010400 vs. NCBI nr
Match: XP_022994352.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita maxima])

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-19
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   MRRKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTN 60
           MRRKKGKR+PRELFT++H+ LVE+GEKWMKKTANSCMLVATLI TVVFAAIFTVPGG  N
Sbjct: 478 MRRKKGKRNPRELFTKEHRNLVEEGEKWMKKTANSCMLVATLIATVVFAAIFTVPGGNNN 537

Query: 61  TTS-TTGSIL 70
                TGS L
Sbjct: 538 NHDINTGSPL 547

BLAST of CsGy1G010400 vs. NCBI nr
Match: XP_023542599.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   MRRKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTN 60
           MRRKKGKR+PRELFT++H+ LVE+GEKWMKKTANSCMLVATLI TVVFAAIFTVPGG  N
Sbjct: 479 MRRKKGKRNPRELFTKEHQNLVEEGEKWMKKTANSCMLVATLIATVVFAAIFTVPGGNNN 538

Query: 61  TTS-TTGSIL 70
                TGS L
Sbjct: 539 NHDINTGSPL 548

BLAST of CsGy1G010400 vs. NCBI nr
Match: XP_022872473.1 (ankyrin repeat-containing protein ITN1-like [Olea europaea var. sylvestris])

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 8   RSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTTST 65
           R+P+ LFTQ+HKGLVE GEKWMK TA+SCMLVATLITTV+FAAIFTVPGG  N T T
Sbjct: 461 RTPQMLFTQEHKGLVESGEKWMKDTASSCMLVATLITTVMFAAIFTVPGGNNNDTGT 517

BLAST of CsGy1G010400 vs. NCBI nr
Match: XP_022872461.1 (ankyrin repeat-containing protein ITN1-like [Olea europaea var. sylvestris])

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 8   RSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTTST 65
           R+P+ LFTQ+HKGLVE GEKWMK TA+SCMLVATLITTV+FAAIFTVPGG  N T T
Sbjct: 451 RTPQMLFTQEHKGLVESGEKWMKDTASSCMLVATLITTVMFAAIFTVPGGNNNDTGT 507

BLAST of CsGy1G010400 vs. TAIR10
Match: AT3G18670.1 (Ankyrin repeat family protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-15
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 5   KGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGY 59
           K K++P+ LFT QHK LVE GEKWMK+TA SC +VA LITT++F++ FTVPGGY
Sbjct: 411 KQKKTPKALFTDQHKDLVEQGEKWMKETATSCTVVAALITTMMFSSAFTVPGGY 464

BLAST of CsGy1G010400 vs. TAIR10
Match: AT5G04700.1 (Ankyrin repeat family protein)

HSP 1 Score: 69.7 bits (169), Expect = 9.0e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 7   KRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTTSTTG 66
           +++P E+FT++H+GL ++ EKWMK TA SC LVA LI TV FAA+FTVPGG  + +    
Sbjct: 483 EQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKP 542

Query: 67  SILEEKR 74
             L ++R
Sbjct: 543 FHLRDRR 549

BLAST of CsGy1G010400 vs. TAIR10
Match: AT3G54070.1 (Ankyrin repeat family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 12  ELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGG 58
           ++FT+QH+ L ++GE+WMK+TA +CML ATLI TVVFAA  T+PGG
Sbjct: 384 DIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGG 429

BLAST of CsGy1G010400 vs. TAIR10
Match: AT5G35810.1 (Ankyrin repeat family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 3   RKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTT 62
           + K +    +LFT++H  L ++GEKWMK+TA +C+LV+TLI TVVFAA FT+PGG  N T
Sbjct: 151 KNKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGG--NDT 209

Query: 63  S 64
           S
Sbjct: 211 S 209

BLAST of CsGy1G010400 vs. TAIR10
Match: AT5G04730.1 (Ankyrin-repeat containing protein)

HSP 1 Score: 63.2 bits (152), Expect = 8.4e-11
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 1   MRRKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTN 60
           +++ K  ++PR++F   H+ L ++GE+WMK TA +C  VA LI TV F AIFTVPGG   
Sbjct: 412 VQKNKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDG 471

Query: 61  TTST 65
           T+ +
Sbjct: 472 TSGS 475

BLAST of CsGy1G010400 vs. TrEMBL
Match: tr|A0A2K1XM30|A0A2K1XM30_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G124900v3 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.9e-15
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 3  RKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTT 62
          R K  R+PR LFT++H+GLV++GEKWMK TA+SCML+ATLITTV+FAAIFTVPGG  N+ 
Sbjct: 2  RDKNGRTPRMLFTEEHRGLVKEGEKWMKNTASSCMLLATLITTVMFAAIFTVPGGNDNSK 61

Query: 63 ST 65
           T
Sbjct: 62 GT 63

BLAST of CsGy1G010400 vs. TrEMBL
Match: tr|A0A2N9FK05|A0A2N9FK05_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19019 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.8e-14
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 0

Query: 3   RKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTT 62
           +    ++P++LFT++HK L+++GEKWMK TA SCMLVATLI TVVFAA+FT+PGG  N T
Sbjct: 396 KNSDNQTPKDLFTEKHKDLLKEGEKWMKSTATSCMLVATLIATVVFAAVFTLPGGGNNVT 455

Query: 63  STTGSILEEKRS 75
               + LE+KRS
Sbjct: 456 GAP-TFLEKKRS 466

BLAST of CsGy1G010400 vs. TrEMBL
Match: tr|A0A0A0LRT6|A0A0A0LRT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058080 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.8e-14
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 7   KRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTTST 65
           K +PR+LFTQ+HK L +DGE+WMK TANSCMLVATLI+TVVFAA FTVPGG  N   T
Sbjct: 456 KLTPRQLFTQEHKDLRKDGEEWMKHTANSCMLVATLISTVVFAAAFTVPGGSNNNEGT 513

BLAST of CsGy1G010400 vs. TrEMBL
Match: tr|A0A059CAM7|A0A059CAM7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E04257 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 3   RKKGKRSPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTT 62
           R K  R+PR LFT++H+ LV++GE WMK TA+SCMLVATLITTV+FAAIFTVPGG TN  
Sbjct: 188 RDKSGRTPRMLFTEEHRALVKEGEDWMKSTASSCMLVATLITTVMFAAIFTVPGG-TNNN 247

Query: 63  STTGSILE 71
           S    +LE
Sbjct: 248 SGVPILLE 254

BLAST of CsGy1G010400 vs. TrEMBL
Match: tr|A0A1S3B2F0|A0A1S3B2F0_CUCME (ankyrin repeat-containing protein At5g02620-like OS=Cucumis melo OX=3656 GN=LOC103485059 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 9   SPRELFTQQHKGLVEDGEKWMKKTANSCMLVATLITTVVFAAIFTVPGGYTNTTST 65
           +PRELFT++HK L++DGE+WMK TANSCMLVATLI TVVFAA FTVPGG  + + T
Sbjct: 544 TPRELFTKEHKSLLKDGEEWMKNTANSCMLVATLIATVVFAAAFTVPGGNDDKSGT 599

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022954801.13.1e-1978.57ankyrin repeat-containing protein ITN1-like [Cucurbita moschata][more]
XP_022994352.13.1e-1978.57ankyrin repeat-containing protein ITN1-like [Cucurbita maxima][more]
XP_023542599.14.0e-1978.57ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo][more]
XP_022872473.11.6e-1578.95ankyrin repeat-containing protein ITN1-like [Olea europaea var. sylvestris][more]
XP_022872461.11.6e-1578.95ankyrin repeat-containing protein ITN1-like [Olea europaea var. sylvestris][more]
Match NameE-valueIdentityDescription
AT3G18670.12.5e-1566.67Ankyrin repeat family protein[more]
AT5G04700.19.0e-1350.75Ankyrin repeat family protein[more]
AT3G54070.11.3e-1163.04Ankyrin repeat family protein[more]
AT5G35810.11.3e-1155.74Ankyrin repeat family protein[more]
AT5G04730.18.4e-1146.88Ankyrin-repeat containing protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2K1XM30|A0A2K1XM30_POPTR8.9e-1569.35Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G124900v3 PE=... [more]
tr|A0A2N9FK05|A0A2N9FK05_FAGSY9.8e-1458.33Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19019 PE=4 SV=1[more]
tr|A0A0A0LRT6|A0A0A0LRT6_CUCSA9.8e-1472.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058080 PE=4 SV=1[more]
tr|A0A059CAM7|A0A059CAM7_EUCGR1.3e-1366.18Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E04257 PE=4 SV... [more]
tr|A0A1S3B2F0|A0A1S3B2F0_CUCME1.7e-1371.43ankyrin repeat-containing protein At5g02620-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026961PGG_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G010400.1CsGy1G010400.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 26..69
e-value: 7.6E-15
score: 54.6
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 3..64
NoneNo IPR availablePANTHERPTHR24177:SF33ANKYRIN REPEAT FAMILY PROTEIN-RELATEDcoord: 3..64

The following gene(s) are paralogous to this gene:

None