CsGy1G010330 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G010330
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 6456210 .. 6456733 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCTCAGTGCAAACTTCCCATAGCAAAGACAATGATATTTCTTCAGAGTCAAATGGGGAAGAAGAACTAACCACTCCTCCTACAGCTCAAAGGTCGAATGCTCCGCCGGCTGATGATCAGTTTGTCGTCAATATAAGGGCTGGAGTAGGAGATGCAGAAGGAGATGTAGAAGGAGATGCAGAAGGAGATGGAGAAGGAGAAGATGGGGAAGAGCAAGAGAATGAGAACGAAGAACAAGAGAGAAATAACAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCTATACCGGAGCACCAACACAAGATCACACAGATAATACAACAGATCCAAGAAGTAACCATGGAGTAGAGCCTGAGCCCAATCCCAATCCTGATCCAGCGGCGGAAAATCAGTCTTCAATTCTGTTCAACTGTACGTTCATCCGTTCTATACATTTATTCCTTCATAAATTATCTCTCGTATTTTTCCCCTTTACATTCTTAAATTTACAATTCCCTGTCCCTAAGATTAA

mRNA sequence

ATGGAAAGCTCAGTGCAAACTTCCCATAGCAAAGACAATGATATTTCTTCAGAGTCAAATGGGGAAGAAGAACTAACCACTCCTCCTACAGCTCAAAGGTCGAATGCTCCGCCGGCTGATGATCAGTTTGTCGTCAATATAAGGGCTGGAGTAGGAGATGCAGAAGGAGATGTAGAAGGAGATGCAGAAGGAGATGGAGAAGGAGAAGATGGGGAAGAGCAAGAGAATGAGAACGAAGAACAAGAGAGAAATAACAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCTATACCGGAGCACCAACACAAGATCACACAGATAATACAACAGATCCAAGAAGTAACCATGGAGTAGAGCCTGAGCCCAATCCCAATCCTGATCCAGCGGCGGAAAATCAGTCTTCAATTCTGTTCAACTATTAA

Coding sequence (CDS)

ATGGAAAGCTCAGTGCAAACTTCCCATAGCAAAGACAATGATATTTCTTCAGAGTCAAATGGGGAAGAAGAACTAACCACTCCTCCTACAGCTCAAAGGTCGAATGCTCCGCCGGCTGATGATCAGTTTGTCGTCAATATAAGGGCTGGAGTAGGAGATGCAGAAGGAGATGTAGAAGGAGATGCAGAAGGAGATGGAGAAGGAGAAGATGGGGAAGAGCAAGAGAATGAGAACGAAGAACAAGAGAGAAATAACAATGCCATGCCCCGGTCTTCCATGGAAGGCAATCGGTCCTATACCGGAGCACCAACACAAGATCACACAGATAATACAACAGATCCAAGAAGTAACCATGGAGTAGAGCCTGAGCCCAATCCCAATCCTGATCCAGCGGCGGAAAATCAGTCTTCAATTCTGTTCAACTATTAA

Protein sequence

MESSVQTSHSKDNDISSESNGEEELTTPPTAQRSNAPPADDQFVVNIRAGVGDAEGDVEGDAEGDGEGEDGEEQENENEEQERNNNAMPRSSMEGNRSYTGAPTQDHTDNTTDPRSNHGVEPEPNPNPDPAAENQSSILFNY
Homology
[Close]
BLAST of CsGy1G010330 vs. NCBI nr
Match: KGN64486.1 (hypothetical protein Csa_1G059180 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 9.3e-38
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 1   MESSVQTSHSKDNDISSESNGEEELTTPPTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX 60
           MESSVQTSHSKDNDISSESNGEEELTT PTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX
Sbjct: 1   MESSVQTSHSKDNDISSESNGEEELTTLPTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQDHTDNTTDPRSNHGV 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQD TDNTTDPRSNHGV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQDRTDNTTDPRSNHGV 120

Query: 121 EXXXXXXXXXXAENQSSILFN 142
           EXXXXXXXXXX ENQSSILFN
Sbjct: 121 EXXXXXXXXXXXENQSSILFN 141

[Close]
BLAST of CsGy1G010330 vs. NCBI nr
Match: XP_011652537.1 (PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 9.3e-38
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 1   MESSVQTSHSKDNDISSESNGEEELTTPPTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX 60
           MESSVQTSHSKDNDISSESNGEEELTT PTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX
Sbjct: 1   MESSVQTSHSKDNDISSESNGEEELTTLPTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQDHTDNTTDPRSNHGV 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQD TDNTTDPRSNHGV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQDRTDNTTDPRSNHGV 120

Query: 121 EXXXXXXXXXXAENQSSILFN 142
           EXXXXXXXXXX ENQSSILFN
Sbjct: 121 EXXXXXXXXXXXENQSSILFN 141

[Close]
BLAST of CsGy1G010330 vs. TrEMBL
Match: tr|A0A0A0LWY1|A0A0A0LWY1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059180 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.1e-38
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 0 

Query: 1   MESSVQTSHSKDNDISSESNGEEELTTPPTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX 60
           MESSVQTSHSKDNDISSESNGEEELTT PTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX
Sbjct: 1   MESSVQTSHSKDNDISSESNGEEELTTLPTAQRSNAPPADDQFVVNIRAGVGDXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQDHTDNTTDPRSNHGV 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQD TDNTTDPRSNHGV
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXAMPRSSMEGNRSYTGAPTQDRTDNTTDPRSNHGV 120

Query: 121 EXXXXXXXXXXAENQSSILFN 142
           EXXXXXXXXXX ENQSSILFN
Sbjct: 121 EXXXXXXXXXXXENQSSILFN 141

The following BLAST results are available for this feature:
BLAST of CsGy1G010330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64486.19.3e-3897.87hypothetical protein Csa_1G059180 [Cucumis sativus][more]
XP_011652537.19.3e-3897.87PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like... [more]
BLAST of CsGy1G010330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G010330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G010330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWY1|A0A0A0LWY1_CUCSA6.1e-3897.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059180 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G010330.1CsGy1G010330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..110