CsGy1G010280 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010280
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	stigma-specific STIG1-like protein 1
Location	Chr1 : 6403882 .. 6404355 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCGTAAAGCTATTCCTTTTTCTAGTTTTGGCAATCATATTCTCTCATTATGCATCACATGCAGCTGAAGTTGAAACAAACAGCAAAGAGAATGCTACTAATTTGTCGGATGATGAAGTTTCCAACCATCTTGCTTCGATTGAAGACGAAGATTCTCCGTTGGGTTTGGCTCGCCGTCTTCTCTTCCCCTTCCAATCTTTGCAGAAGGGATTATTGACTTGCAACAAATACCCTAGAGTGTGCAGAAGGAAGGGCAGTGCAGGGCCTGATTGTTGCAAGAAAAAGTGTGTAAACGTTGAGAGAGATAGAAACAACTGTGGAAGGTGTGGAAAGAAATGCAAGTACTCGAAGATATGCTGCAAAGGGAAATGTGTGAATCCATTGTTCAATAGGAAGCATTGTGGAGGCTGCAACATTGAATGCAGTAAAGGAAGCTTCTGCGTCTATGGAATGTGTGGTTATGCTTAA

mRNA sequence

ATGAAGATCGTAAAGCTATTCCTTTTTCTAGTTTTGGCAATCATATTCTCTCATTATGCATCACATGCAGCTGAAGTTGAAACAAACAGCAAAGAGAATGCTACTAATTTGTCGGATGATGAAGTTTCCAACCATCTTGCTTCGATTGAAGACGAAGATTCTCCGTTGGGTTTGGCTCGCCGTCTTCTCTTCCCCTTCCAATCTTTGCAGAAGGGATTATTGACTTGCAACAAATACCCTAGAGTGTGCAGAAGGAAGGGCAGTGCAGGGCCTGATTGTTGCAAGAAAAAGTGTGTAAACGTTGAGAGAGATAGAAACAACTGTGGAAGGTGTGGAAAGAAATGCAAGTACTCGAAGATATGCTGCAAAGGGAAATGTGTGAATCCATTGTTCAATAGGAAGCATTGTGGAGGCTGCAACATTGAATGCAGTAAAGGAAGCTTCTGCGTCTATGGAATGTGTGGTTATGCTTAA

Coding sequence (CDS)

ATGAAGATCGTAAAGCTATTCCTTTTTCTAGTTTTGGCAATCATATTCTCTCATTATGCATCACATGCAGCTGAAGTTGAAACAAACAGCAAAGAGAATGCTACTAATTTGTCGGATGATGAAGTTTCCAACCATCTTGCTTCGATTGAAGACGAAGATTCTCCGTTGGGTTTGGCTCGCCGTCTTCTCTTCCCCTTCCAATCTTTGCAGAAGGGATTATTGACTTGCAACAAATACCCTAGAGTGTGCAGAAGGAAGGGCAGTGCAGGGCCTGATTGTTGCAAGAAAAAGTGTGTAAACGTTGAGAGAGATAGAAACAACTGTGGAAGGTGTGGAAAGAAATGCAAGTACTCGAAGATATGCTGCAAAGGGAAATGTGTGAATCCATTGTTCAATAGGAAGCATTGTGGAGGCTGCAACATTGAATGCAGTAAAGGAAGCTTCTGCGTCTATGGAATGTGTGGTTATGCTTAA

Protein sequence

MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLARRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGRCGKKCKYSKICCKGKCVNPLFNRKHCGGCNIECSKGSFCVYGMCGYA

Homology

[Close]

BLAST of CsGy1G010280 vs. NCBI nr
Match: XP_004145194.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64481.1 hypothetical protein Csa_1G058155 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 6.0e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR
Sbjct: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR
Sbjct: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 110

[Close]

BLAST of CsGy1G010280 vs. NCBI nr
Match: XP_008440721.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 6.2e-51
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MK+ KL LFLVLAI FSHYASHAAEVETNSKENATNLSDDEVSNHLA IEDEDSP+GLAR
Sbjct: 1   MKLSKLLLFLVLAITFSHYASHAAEVETNSKENATNLSDDEVSNHLAPIEDEDSPMGLAR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR
Sbjct: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 110

[Close]

BLAST of CsGy1G010280 vs. NCBI nr
Match: XP_008440707.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MK  KL   LV   I SHY +HAA+ E ++KEN T+ SDDE  + L+ +E E+SP G  R
Sbjct: 1   MKSSKLLFLLVALTIVSHYVAHAAKAEMSNKENVTS-SDDETFDQLSPMETENSPPGSLR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 110
            LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  GLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 107

[Close]

BLAST of CsGy1G010280 vs. NCBI nr
Match: XP_004145195.1 (PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIED-EDSPLGLA 60
           MK  K     V  II SHY +HA+ VE ++KEN T+L DDE  + L+ +E+ ++SP G  
Sbjct: 1   MKFSKPLFLWVALIIVSHYVAHASIVEMSNKENVTSL-DDETFDQLSPVEETKNSPSGSV 60

Query: 61  RRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 110
           R LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  RGLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 108

[Close]

BLAST of CsGy1G010280 vs. NCBI nr
Match: KGN64480.1 (hypothetical protein Csa_1G058150 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-19
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 29  NSKENATNLSDDEVSNHLASIED-EDSPLGLARRLLFPFQSLQKGLLTCNKYPRVCRRKG 88
           ++KEN T+L DDE  + L+ +E+ ++SP G  R LLF F+SLQKG +TCNKYPRVCR KG
Sbjct: 2   SNKENVTSL-DDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKG-VTCNKYPRVCRAKG 61

Query: 89  SAGPDCCKKKCVNVERDRNNCG 110
           S GPDCC +KCVNVE DRNNCG
Sbjct: 62  SKGPDCCNRKCVNVETDRNNCG 81

[Close]

BLAST of CsGy1G010280 vs. TAIR10
Match: AT1G11925.1 (Stigma-specific Stig1 family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 74  LTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           LTC+K  +VCR KGS G +CC+KKCV++  ++ NCGR
Sbjct: 57  LTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKLNCGR 93

[Close]

BLAST of CsGy1G010280 vs. TrEMBL
Match: tr|A0A0A0LWX5|A0A0A0LWX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058155 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.9e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR
Sbjct: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR
Sbjct: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 110

[Close]

BLAST of CsGy1G010280 vs. TrEMBL
Match: tr|A0A1S3B2E0|A0A1S3B2E0_CUCME (stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485051 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.1e-51
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MK+ KL LFLVLAI FSHYASHAAEVETNSKENATNLSDDEVSNHLA IEDEDSP+GLAR
Sbjct: 1   MKLSKLLLFLVLAITFSHYASHAAEVETNSKENATNLSDDEVSNHLAPIEDEDSPMGLAR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 111
           RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR
Sbjct: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCGR 110

[Close]

BLAST of CsGy1G010280 vs. TrEMBL
Match: tr|A0A1S3B1R3|A0A1S3B1R3_CUCME (stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485044 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   MKIVKLFLFLVLAIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPLGLAR 60
           MK  KL   LV   I SHY +HAA+ E ++KEN T+ SDDE  + L+ +E E+SP G  R
Sbjct: 1   MKSSKLLFLLVALTIVSHYVAHAAKAEMSNKENVTS-SDDETFDQLSPMETENSPPGSLR 60

Query: 61  RLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 110
            LLF F+SLQKG +TCNKYPRVCR KGS GPDCC +KCVNVE DRNNCG
Sbjct: 61  GLLFNFESLQKG-VTCNKYPRVCRAKGSKGPDCCNRKCVNVETDRNNCG 107

[Close]

BLAST of CsGy1G010280 vs. TrEMBL
Match: tr|A0A0A0LRD7|A0A0A0LRD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058150 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 29  NSKENATNLSDDEVSNHLASIED-EDSPLGLARRLLFPFQSLQKGLLTCNKYPRVCRRKG 88
           ++KEN T+L DDE  + L+ +E+ ++SP G  R LLF F+SLQKG +TCNKYPRVCR KG
Sbjct: 2   SNKENVTSL-DDETFDQLSPVEETKNSPSGSVRGLLFNFESLQKG-VTCNKYPRVCRAKG 61

Query: 89  SAGPDCCKKKCVNVERDRNNCG 110
           S GPDCC +KCVNVE DRNNCG
Sbjct: 62  SKGPDCCNRKCVNVETDRNNCG 81

[Close]

BLAST of CsGy1G010280 vs. TrEMBL
Match: tr|A0A061GGS8|A0A061GGS8_THECC (Stigma-specific Stig1 family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_030273 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MKIVKLFLFLVL----AIIFSHYASHAAEVETNSKENATNLSDDEVSNHLASIEDEDSPL 60
           MK+VK+FL L L    AI  S  A    E   ++ ++A+ ++DD     L S + ++ P 
Sbjct: 60  MKLVKVFLMLALLMASAISLSAAAPSEEEPFVDNDDDASEVADD----LLPSADGQEQPT 119

Query: 61  GLARRLLFPFQSLQKGLLTCNKYPRVCRRKGSAGPDCCKKKCVNVERDRNNCG 110
            L     F  Q   + ++TCNKYPRVCR  GS GPDCCKKKCVNV+ DR NCG
Sbjct: 120 SLRGASRFLAQK-PRAVMTCNKYPRVCRVAGSPGPDCCKKKCVNVKTDRLNCG 167

The following BLAST results are available for this feature:

BLAST of CsGy1G010280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145194.1	6.0e-54	100.00	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus] >KGN64481.1 hy...	[more]
XP_008440721.1	6.2e-51	94.55	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo]	[more]
XP_008440707.1	1.8e-26	62.39	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis melo]	[more]
XP_004145195.1	1.3e-24	60.00	PREDICTED: stigma-specific STIG1-like protein 1 [Cucumis sativus]	[more]
KGN64480.1	2.8e-19	64.63	hypothetical protein Csa_1G058150 [Cucumis sativus]	[more]

BLAST of CsGy1G010280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11925.1	3.0e-07	56.76	Stigma-specific Stig1 family protein	[more]

BLAST of CsGy1G010280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWX5\|A0A0A0LWX5_CUCSA	3.9e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058155 PE=4 SV=1	[more]
tr\|A0A1S3B2E0\|A0A1S3B2E0_CUCME	4.1e-51	94.55	stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485051 PE=...	[more]
tr\|A0A1S3B1R3\|A0A1S3B1R3_CUCME	1.2e-26	62.39	stigma-specific STIG1-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485044 PE=...	[more]
tr\|A0A0A0LRD7\|A0A0A0LRD7_CUCSA	1.9e-19	64.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058150 PE=4 SV=1	[more]
tr\|A0A061GGS8\|A0A061GGS8_THECC	1.7e-12	45.13	Stigma-specific Stig1 family protein, putative OS=Theobroma cacao OX=3641 GN=TCM...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006969	Stig1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010280.1	CsGy1G010280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006969	Stigma-specific protein Stig1	PFAM	PF04885	Stig1	coord: 22..157 e-value: 5.8E-41 score: 140.1
IPR006969	Stigma-specific protein Stig1	PANTHER	PTHR33227	FAMILY NOT NAMED	coord: 1..157
None	No IPR available	PANTHER	PTHR33227:SF13	SUBFAMILY NOT NAMED	coord: 1..157

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010280	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010280	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G010280	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010280	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010280	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G010280	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010280	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010280	Cucurbita pepo (Zucchini)	cgybcpeB070
CsGy1G010280	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010280	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010280	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010280	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010280	Melon (DHL92) v3.5.1	cgybmeB034
CsGy1G010280	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010280	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010280	Watermelon (97103) v1	cgybwmB010
CsGy1G010280	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010280	Silver-seed gourd	carcgybB0500
CsGy1G010280	Silver-seed gourd	carcgybB0992
CsGy1G010280	Silver-seed gourd	carcgybB0989
CsGy1G010280	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G010280	Watermelon (97103) v2	cgybwmbB032
CsGy1G010280	Wax gourd	cgybwgoB030