CsGy1G010220 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010220
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ankyrin repeat-containing protein At3g12360-like
Location	Chr1 : 6375036 .. 6378409 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAGTCGAAGAGTTCCCCTTCAATTCCAATTCAAAGTGGTAGTTTAAGCCTAACAACAACTACTACTACTACATCTTCACATCATGAGCAAGTAGAGATTGTTGTTGAAGGCCAACCCATTATTCCTCCGCCCTCTACGGCGGCTGACGACTCCCAATTGCCACCCACTGCTGCTGATCAGTTAACATTGTGCAATCCCACGGAGCCGGATAGCCAGACAATAGATGGGGCAGAAGCAGATGATTCGGATCTAAAAGCCAAGGTTCCAAGTTTTGGTATTTGTTTCATACTCTGCCTTCAATTTTTAAAATGCGTTGCTACTGTCCACATAAAAATGGTAGACATGCTCAATATCTTATCCTAAAATTTTTATTGCGAAAATGCCCTTTTGGCATCTTCTTCCCATCCAGTTTCCTTTTATTACTATTTTACCATTGAAGATTTTAATTTGGTTTCCTATTCATTCCAAGAATTATATTTTTACTTTTAGAGACATAAAGATATTAAAACATAAAGATATTATAATTAGCTATGATTTGTTTTCAAAATATAACAAAATGAATCCAAATAGTTACAAATATAACAAATATAGATTGATAAGATGACTACCAATGTTTAACATTGTCTATCACACATCATATATATACAATGAAACTTTGCTATATTTATAGATATTTTTAGGAGTTTTGCCACTTACACCAATTTCCCATATGTTTCACTATTTTTCTTCAAAATTTATATTAATTTTAAAATTCTATTACTTCATAATTAATTATTTTAATTCTTTTTTTTTTCCAAAGTATAACCCAAAGTAGTTTAAAATTATTGATAAGGAGAATTGGCAGGTACTTTTATATATCACGAATTCAGAAGAAGCTTACTACATCAAGCTGCATTGGGCGGAAATTGGGGAATGGTTGAATACCTGTTAACAAAACAAGAGTTGTGGGGAACATTTACTGTAATGGATTCAATAACAAGAGATGAAGAGAACCTTCTTCATATTTCTGCTGGATCAAAGCATAGTGGTATTGTAGAAAAGTTGATGGAGAAAATGAGTTCAGATGAGGTGGCATTGAAAAACAAACATAATAACACTGCCCTTTGCTTTGCTGCTATATCAGGACCTGTCAGAAATGCTGAGTTAATAGTGAAAAAAAATTCTGAACTTCCACTTATTCATGGCTTTGAAAATAAAACTCCATTGTTCATGGCCATTTCTTGCAAACGCAGAGAGATGGCTTCTTACCTTCTCCAAGTCACTGACATCGACAAATTCAACATCCAAGAGCAATTTGAGCTACTTATTGCCTCCATACATAGCAACTTCTATGGTAACTAATCATTCACTTCACCATTTTTATTTTTTTTATTTTTTTTTATTTTTTTGTATCTTTTCCTTATTTTTTTTACTATTCTTTCCTTTGTTTGTGTAATTCAGTGTATTTTGATTATGTTAATTATTCAATAATATACACAAAGTTAACATGGTGTCAAAGCTCGGTTTTATTAGATATTCAATTCTGATTGTCACCCCTACCTCTGTCTAATCTCTGTCTCCGCCGATGTTCTTTTTGGGTTTCTTTGTTTTCTTGTTTCAAATCTTTAAAGATCTCTGTTCCATTTTGAAAGCTGTGATGATCTATCATTCTGGGATATTTAATACCTTGGAACTTCGTCATGTTTATTTAATACCTTGCATTCTCCTAACTTTTTGATTTACCCTTAACTTGGATTGGATTTTCTTAACAGACATGAGTATGAAGATTTTTGAAAAAAATGAGAAGTTAGCAATTGTGGAAGACGAAAATAACAACAATGAGCTTGCATTGCTTGTGCTAGCCAGAAAATCATCAGCAATCGGTGGCAGGAAGAGATTCAACTTTTGGAAAAAGTCCATCAATAATCATTGTTAGTTTTTATTAATTTAATTCAAAAACTACTTAATTAGCTCTAATTGTTTAATTATTTTTTCAAAAAACTTTGCTCCATTATTATCTTTTGACACTGTCAGGCTTCAAAGGAATCTACAGAAAAGATATGATGAAGAAGTTCGCTCGTAAATTAGTTAAACAATTATGGCTGGCTTTTCAGAAAAACTTCCCACGAAATGACAACTTCATTAAACTATCTACAAGACTACTACACGATGCTGCAAAAGCAGGAAACGTTGAGTTTTTAATTATACTAATCGAATCAAATCCAGATATTGTATGGGAAGAAGATGATGATGGGAAGACCATTTTTCACATAGCTGTCGAAAATCGACTCGAGAATGTGTTCAATCTAATACATCACAATAGTGGAGTGAAGGACTTCTCAACAAAGTATAAAACTCTTAAGGGTAACTATAACATTTTACATTTGGCTGCAAAACTAGCTGCTTTAAACCATCTCAATAAGGTCTCAGGAGCTGCACTTCAAATGCAACGTGAATTACTTTGGTTTAAGGAAGTGGAGAAGATAGTTTTGCCTTCTCAATTGGAGGCCAAATGTGATACAGATGATGTTTCTATCAAGTTAACACCACGTGAATTATTCACCAAAGAACATGCGCATCTTCGCCGAAAAGGCGAGGAGTGGATGAAGAACACTGCAAACTCATGTATGCTTGTTGCCACTCTAATCGCCACAGTAGTTTTCGCTGCAGCCTTTACAATACCTGGTGGTGGAAACGAAAGTACTGGCACTCCTATTCATAGACAGGAAGTTTGGTTCACTGTTTTTGTAATGTCGGATGCAGCTGGTTTGATCACATCCTCAAGTTCTATTTTGTTGTTTTTATCGATGCTAACTTCTCGTTATGCAGAAGACGACTTTTTGCATTCACTGCCTTTAAGATTGCTGTTTGGACTCACAATGCTATTCTTCTCCATCGTATGCATGGTCATCGCCTTTACTGCAGCCTTCTTTTTGATCTACCATGAGGCTAACATTGGTGTTCCCATCACTATTGCTGCAATGGCAATTATTCCAATTGGTTGTTGTGCACTTCAATTCAAACTGTGGATCGACACTTTTCACAACACTTTTTTGTCTAGATTTCTTTTTAAGCCTCGTCAACGAAAATTTCTCTCATCGTATTCAGTTCTTGTAAATCTTGCACGTGATATAGCAAACTAGCTAGGGGTGTTGCATTGGTTATGTGAGAACATTCTTGTTAAAAAAACTGAATTGGAAGATATATTGGGTTTCATTCCATTTTTGCTTCTTCATGTGTTGAGTAAGACCTTGATTATAATGAAGACTTTTAAGTGCTCGCTTCACATATAACATTTTTTGTGGATATCTGTTCGTTAGTGTATCAACATATCACCTAGCACTCAACTTCTTTATTATATTCCACTTCTTGAAGTAAATATATGCTGA

mRNA sequence

ATGAGAAAGTCGAAGAGTTCCCCTTCAATTCCAATTCAAAGTGGTAGTTTAAGCCTAACAACAACTACTACTACTACATCTTCACATCATGAGCAAGTAGAGATTGTTGTTGAAGGCCAACCCATTATTCCTCCGCCCTCTACGGCGGCTGACGACTCCCAATTGCCACCCACTGCTGCTGATCAGTTAACATTGTGCAATCCCACGGAGCCGGATAGCCAGACAATAGATGGGGCAGAAGCAGATGATTCGGATCTAAAAGCCAAGGTTCCAAGTTTTGTAAATATATGCTGA

Coding sequence (CDS)

ATGAGAAAGTCGAAGAGTTCCCCTTCAATTCCAATTCAAAGTGGTAGTTTAAGCCTAACAACAACTACTACTACTACATCTTCACATCATGAGCAAGTAGAGATTGTTGTTGAAGGCCAACCCATTATTCCTCCGCCCTCTACGGCGGCTGACGACTCCCAATTGCCACCCACTGCTGCTGATCAGTTAACATTGTGCAATCCCACGGAGCCGGATAGCCAGACAATAGATGGGGCAGAAGCAGATGATTCGGATCTAAAAGCCAAGGTTCCAAGTTTTGTAAATATATGCTGA

Protein sequence

MRKSKSSPSIPIQSGSLSLTTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQLPPTAADQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSFVNIC

Homology

[Close]

BLAST of CsGy1G010220 vs. NCBI nr
Match: XP_004153067.1 (PREDICTED: ankyrin repeat-containing protein At3g12360 isoform X1 [Cucumis sativus] >KGN64476.1 hypothetical protein Csa_1G058110 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MRKSKSSPSIPIQSGSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MRKSKSSPSIPIQSGSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MRKSKSSPSIPIQSGSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 DQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSF 94
          DQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSF
Sbjct: 61 DQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSF 93

[Close]

BLAST of CsGy1G010220 vs. NCBI nr
Match: XP_008440652.1 (PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 5.8e-07
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MRKSKSSPSIPIQSGSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MRKSKS PSIPIQSG LSL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 1  MRKSKSFPSIPIQSG-LSL-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 60

Query: 61 DQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSFVNI 97
          DQLTLCN TEPDSQTI+GA AD+ DLKAK PSF +I
Sbjct: 61 DQLTLCNTTEPDSQTINGAVADNPDLKAKAPSFGSI 94

[Close]

BLAST of CsGy1G010220 vs. TrEMBL
Match: tr|A0A0A0LWX0|A0A0A0LWX0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058110 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MRKSKSSPSIPIQSGSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MRKSKSSPSIPIQSGSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MRKSKSSPSIPIQSGSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 DQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSF 94
          DQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSF
Sbjct: 61 DQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSF 93

[Close]

BLAST of CsGy1G010220 vs. TrEMBL
Match: tr|A0A1S3B281|A0A1S3B281_CUCME (ankyrin repeat-containing protein At3g12360-like OS=Cucumis melo OX=3656 GN=LOC103485002 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MRKSKSSPSIPIQSGSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MRKSKS PSIPIQSG LSL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 1  MRKSKSFPSIPIQSG-LSL-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 60

Query: 61 DQLTLCNPTEPDSQTIDGAEADDSDLKAKVPSFVNI 97
          DQLTLCN TEPDSQTI+GA AD+ DLKAK PSF +I
Sbjct: 61 DQLTLCNTTEPDSQTINGAVADNPDLKAKAPSFGSI 94

The following BLAST results are available for this feature:

BLAST of CsGy1G010220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153067.1	1.7e-14	100.00	PREDICTED: ankyrin repeat-containing protein At3g12360 isoform X1 [Cucumis sativ...	[more]
XP_008440652.1	5.8e-07	87.50	PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo]	[more]

BLAST of CsGy1G010220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G010220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWX0\|A0A0A0LWX0_CUCSA	1.1e-14	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058110 PE=4 SV=1	[more]
tr\|A0A1S3B281\|A0A1S3B281_CUCME	3.8e-07	87.50	ankyrin repeat-containing protein At3g12360-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010220.1	CsGy1G010220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010220	Csa1G058110	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010220	MELO3C002417	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010220	CSPI01G10210	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010220	CsaV3_1G010280	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010220	Watermelon (97103) v2	cgybwmbB032
CsGy1G010220	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010220	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010220	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010220	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010220	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010220	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010220	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010220	Melon (DHL92) v3.5.1	cgybmeB034
CsGy1G010220	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010220	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010220	Watermelon (97103) v1	cgybwmB010
CsGy1G010220	Silver-seed gourd	carcgybB0500
CsGy1G010220	Silver-seed gourd	carcgybB0989